View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_low_20 (Length: 479)
Name: NF1056_low_20
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 10 - 450
Target Start/End: Original strand, 2524847 - 2525284
Alignment:
| Q |
10 |
tcatagggcaaggaagttatgttatagttttgttgattggtgttctaaacatgcatgtaatgtgcat-gaaagacatctttgattcaaatatttgtattg |
108 |
Q |
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| T |
2524847 |
tcatagggcaaggaagttatgttatagttttgttgatcggtgttctaaacatg----taatgtgcattgaaagacatctttgattcaaatatttttattg |
2524942 |
T |
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| Q |
109 |
ggttcaagtatccatcataatctctataacatatctttgtttataaaagaaggtagtacaaatatcaaatcaaaaatgcattttatagccatgatcaaca |
208 |
Q |
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| T |
2524943 |
ggttcaagtatccatcataatctctataacatatctttgtttataaaagaaggcagtacaaatatcaaatcaaaaatgcattttatagccatgatcaaca |
2525042 |
T |
|
| Q |
209 |
tacatgtccaattttaaaatgaattttatttcttataaataggtgatgattgtattgccctcaatggtggttcttcttacatcaatgttacccgtgtttt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2525043 |
tacatgtccaattttaaaatgaattttatttcttataaataggtgatgattgtattgccctcaatggtggttcttcttacatcaatgttacccgtgtttt |
2525142 |
T |
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| Q |
309 |
ttgtggacccggccatggaataaggttatgcaatataataattgaattatagtttattctattccattttatagctcatatgcaaataagaaaagcaaag |
408 |
Q |
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| T |
2525143 |
ttgtggacccggccatggaataaggttatgcaatataataattgaattatagtttattctattccattttatagctcatatgcaaataagaaaagcaagg |
2525242 |
T |
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| Q |
409 |
atatgaaatttatttatcttatgttatactgatatgatattt |
450 |
Q |
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| T |
2525243 |
atatgaaatttatttatcttatgttatactgatatgatattt |
2525284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 212 - 287
Target Start/End: Original strand, 32924749 - 32924824
Alignment:
| Q |
212 |
atgtccaattttaaaatgaattttatttcttataaataggtgatgattgtattgccctcaatggtggttcttctta |
287 |
Q |
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| T |
32924749 |
atgtgcaattttaaaatgagttggttttcttataaataggtgatgattgtattgccatcaatggtggctcctctta |
32924824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 243 - 336
Target Start/End: Original strand, 2555617 - 2555710
Alignment:
| Q |
243 |
ataaataggtgatgattgtattgccctcaatggtggttcttcttacatcaatgttacccgtgttttttgtggacccggccatggaataaggtta |
336 |
Q |
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| T |
2555617 |
ataaataggtgatgattgtattgcgcttaatagtggctccttttttattaatgttactcgggttacttgcggaccaggccatggaataaggtta |
2555710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 335
Target Start/End: Original strand, 2550054 - 2550152
Alignment:
| Q |
237 |
tttcttataaataggtgatgattgtattgccctcaatggtggttcttcttacatcaatgttacccgtgttttttgtggacccggccatggaataaggtt |
335 |
Q |
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| T |
2550054 |
tttcttttaaataggtgacgattgtattgcagtaaatggtggctccacttttatcaatgctactcgggttacttgtggaccaggccatgggataaggtt |
2550152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 337
Target Start/End: Complemental strand, 11658541 - 11658441
Alignment:
| Q |
237 |
tttcttataaataggtgatgattgtattgccctcaatggtggttcttcttacatcaatgttacccgtgttttttgtggacccggccatggaataaggtta |
336 |
Q |
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|||| |||||| ||||||||||||||||||| |||| | ||||| |||||||||| | ||| ||| || |||||||| || ||||| ||||||||| |
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| T |
11658541 |
tttcgtataaacaggtgatgattgtattgccgtcaaagaaggttcctcttacatcagcgctactcgtattgcttgtggactaggtcatgggataaggtta |
11658442 |
T |
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| Q |
337 |
t |
337 |
Q |
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| T |
11658441 |
t |
11658441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 337
Target Start/End: Original strand, 13558610 - 13558698
Alignment:
| Q |
249 |
aggtgatgattgtattgccctcaatggtggttcttcttacatcaatgttacccgtgttttttgtggacccggccatggaataaggttat |
337 |
Q |
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||||||||||||||||||| | ||||| || || ||||||||| ||| ||| |||||| ||||| || || |||||||||||||||| |
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| T |
13558610 |
aggtgatgattgtattgccgttaatgggggatcctcttacatctatgctactcgtgttgcatgtggtccagggcatggaataaggttat |
13558698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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