View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1056_low_21 (Length: 472)
Name: NF1056_low_21
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_low_21 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Original strand, 43817516 - 43817987
Alignment:
| Q |
1 |
agatcgcgttgacattggcctaatgcatacattggatgccaattaccaactaatgtttgtgctccccacccctgctgtttcacctgaaatgagaccgcgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43817516 |
agatcgcgttgacattggcctaatgcatacattggatgccaattaccaactaatgtttgtgctccccacccctgctgtttcacctgaaatgagaccgcgt |
43817615 |
T |
|
| Q |
101 |
ccattacaaccatcaagttttgcttcaacttgtgattgttagtattgttaccatcatgagggtattgataagtcccgcatgttagaccagcttcgtgtat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43817616 |
ccattacaaccatcaagttttgcttcaacttgtgattgttagtattgttaccatcatgagggtattgataagtcccgcatgttagaccagcttcgtgtat |
43817715 |
T |
|
| Q |
201 |
tgcaccgtcaaagcatgtcacatatgataacaacgaggatattacgattccacataaaatgtggaaatttttcatttcttctatgtatctatttcaattt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43817716 |
tgcaccgtcaaagcatgtcacatatgataacaacgaggatattacgattccacataaaatgtggaaatttttcatttcttctatgtatctatttcaattt |
43817815 |
T |
|
| Q |
301 |
caattccctaatcgtcacgtttttaatgaaaacaaatcagattaggaaatgtatgattggtgtttcttttttctatgttggagaaatgagaaataatgaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43817816 |
caattccctaatcgtcacgtttttaatgaaaacaaatcagattaggaaatgaatgattggtgtttcttttttctatgttggagaaatgagaaataatgaa |
43817915 |
T |
|
| Q |
401 |
aactaagatatgattatttggattcaataaagggattgttacttcgttttggtttcatcaacatgatatttt |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43817916 |
aactaagatatgattatttggattcaataaagggattgttacttcgttttggtttcatcaacatgatatttt |
43817987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University