View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1056_low_23 (Length: 459)
Name: NF1056_low_23
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_low_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 6 - 215
Target Start/End: Complemental strand, 53675387 - 53675181
Alignment:
| Q |
6 |
agtgagatgaagacaatcacaacttaggcaagcaaaagcatatgttatatctgtgcttggagaatttgcacagacttgttgttggtccaaacaggtaatt |
105 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
53675387 |
agtgagaagaagacaatcacaacttaggcaagcaaaagcatatgttatatctgtgcttggagaatttgcacagacttgttg---gtccaaacaggtaatt |
53675291 |
T |
|
| Q |
106 |
aatttcaaacacacgtgaatcaaatcatacaagtatatatgtgtctccatcatcaataaaattgaggaaaaaataatgttttgttattggatagggggaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
53675290 |
aatttcaaacacacgtgaatcaaatcatacaagtatatatgtgtctccatcatcaataaaattggggaaaaaataatgttttgttattggatagggggaa |
53675191 |
T |
|
| Q |
206 |
tgcaacacat |
215 |
Q |
| |
|
|||||||||| |
|
|
| T |
53675190 |
tgcaacacat |
53675181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 216 - 414
Target Start/End: Complemental strand, 53675128 - 53674930
Alignment:
| Q |
216 |
gtttacgtgatttgcattccttctgattagtccgcaaaaaacgacattgaatagggatggattctagagacatggaggggaccaaattttagtaagtact |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
53675128 |
gtttacgtgatttgcattccttctgattagtctgcaaaaaacgacattcgatagggatggattctagagacatggagtggaccaaattttagtaagtact |
53675029 |
T |
|
| Q |
316 |
aagatgaagagtattttagagggaatcaaaaatatagttgaccctgtctgtcatataatggttagactttaatatggtttgctattagagtcgaagaat |
414 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53675028 |
aagatgaagagtattttagagggaataaaaaatatagttgaccctgtctgtcatataatggttagactttaatatggtttgctattagagtcgaagaat |
53674930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University