View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1056_low_26 (Length: 444)

Name: NF1056_low_26
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1056_low_26
NF1056_low_26
[»] chr4 (28 HSPs)
chr4 (124-242)||(25104539-25104658)
chr4 (295-438)||(25104292-25104435)
chr4 (305-406)||(45847923-45848024)
chr4 (304-407)||(40406956-40407060)
chr4 (307-407)||(51974743-51974843)
chr4 (304-407)||(16556447-16556550)
chr4 (304-407)||(46283118-46283221)
chr4 (304-407)||(36993037-36993140)
chr4 (304-407)||(50815703-50815806)
chr4 (305-407)||(43362165-43362267)
chr4 (304-399)||(11491215-11491310)
chr4 (304-394)||(22096387-22096477)
chr4 (305-406)||(48404134-48404235)
chr4 (319-407)||(27862842-27862930)
chr4 (360-407)||(8716442-8716489)
chr4 (304-385)||(45355714-45355794)
chr4 (304-385)||(45369455-45369535)
chr4 (304-391)||(42154578-42154665)
chr4 (304-377)||(53096519-53096593)
chr4 (358-407)||(23448969-23449018)
chr4 (304-385)||(29889774-29889855)
chr4 (304-352)||(23771291-23771339)
chr4 (308-407)||(2832071-2832170)
chr4 (304-404)||(13210155-13210260)
chr4 (304-407)||(38690662-38690765)
chr4 (304-350)||(32470392-32470438)
chr4 (358-407)||(31261754-31261803)
chr4 (358-407)||(39387474-39387523)
[»] chr1 (33 HSPs)
chr1 (304-399)||(50065014-50065109)
chr1 (304-406)||(43109234-43109336)
chr1 (304-407)||(24134620-24134723)
chr1 (305-407)||(34702310-34702412)
chr1 (295-405)||(8893858-8893968)
chr1 (304-407)||(50011503-50011606)
chr1 (304-393)||(14262717-14262806)
chr1 (304-407)||(15417813-15417916)
chr1 (304-391)||(42937225-42937312)
chr1 (304-407)||(48497209-48497312)
chr1 (304-407)||(49619968-49620071)
chr1 (304-402)||(19424047-19424145)
chr1 (305-404)||(25800330-25800429)
chr1 (305-407)||(7438617-7438719)
chr1 (304-394)||(25031493-25031583)
chr1 (308-393)||(4684177-4684262)
chr1 (304-407)||(27054686-27054795)
chr1 (307-407)||(23368731-23368831)
chr1 (305-407)||(12973275-12973377)
chr1 (358-407)||(47651868-47651917)
chr1 (304-393)||(52164367-52164456)
chr1 (295-407)||(25585293-25585405)
chr1 (363-407)||(35527390-35527434)
chr1 (355-407)||(39304250-39304302)
chr1 (304-407)||(24253639-24253742)
chr1 (304-399)||(35195607-35195702)
chr1 (304-407)||(40061439-40061542)
chr1 (304-350)||(16985931-16985977)
chr1 (304-350)||(21947245-21947290)
chr1 (295-393)||(30735838-30735936)
chr1 (304-405)||(2017681-2017781)
chr1 (295-384)||(52720703-52720792)
chr1 (304-392)||(3347699-3347787)
[»] chr7 (24 HSPs)
chr7 (304-407)||(40273817-40273920)
chr7 (304-407)||(24029981-24030084)
chr7 (304-407)||(48433706-48433809)
chr7 (304-406)||(12166079-12166181)
chr7 (304-405)||(31793466-31793567)
chr7 (304-407)||(38378215-38378318)
chr7 (305-399)||(23602278-23602372)
chr7 (306-406)||(42554631-42554731)
chr7 (304-407)||(23824588-23824690)
chr7 (304-405)||(3889796-3889898)
chr7 (304-390)||(4956088-4956174)
chr7 (304-393)||(34322020-34322109)
chr7 (304-407)||(27454007-27454111)
chr7 (304-403)||(43440689-43440788)
chr7 (305-407)||(33248799-33248901)
chr7 (284-404)||(37918679-37918799)
chr7 (358-407)||(42338297-42338346)
chr7 (304-393)||(28712378-28712466)
chr7 (303-350)||(13295370-13295417)
chr7 (356-407)||(26456053-26456104)
chr7 (304-370)||(42841777-42841843)
chr7 (304-393)||(3961404-3961493)
chr7 (308-405)||(44986592-44986689)
chr7 (307-407)||(46266664-46266764)
[»] chr6 (18 HSPs)
chr6 (304-407)||(6228256-6228359)
chr6 (304-407)||(20415558-20415661)
chr6 (304-407)||(18903363-18903466)
chr6 (295-399)||(19748103-19748206)
chr6 (304-405)||(29321972-29322073)
chr6 (295-407)||(4854293-4854405)
chr6 (304-404)||(24794891-24794991)
chr6 (304-407)||(17216954-17217057)
chr6 (304-407)||(15717004-15717112)
chr6 (304-398)||(25091095-25091189)
chr6 (304-408)||(1128412-1128519)
chr6 (304-393)||(9357166-9357255)
chr6 (295-407)||(30422095-30422207)
chr6 (304-378)||(3974466-3974540)
chr6 (304-393)||(31637354-31637443)
chr6 (304-336)||(5948938-5948970)
chr6 (358-406)||(25045737-25045785)
chr6 (307-407)||(28536167-28536267)
[»] chr5 (18 HSPs)
chr5 (304-407)||(31250143-31250246)
chr5 (304-407)||(38503253-38503356)
chr5 (304-404)||(43227865-43227965)
chr5 (304-404)||(15470617-15470717)
chr5 (304-407)||(42208913-42209015)
chr5 (307-404)||(17077360-17077457)
chr5 (304-407)||(5039677-5039779)
chr5 (304-392)||(41836051-41836139)
chr5 (304-379)||(4395847-4395922)
chr5 (304-399)||(15680897-15680992)
chr5 (304-398)||(15696212-15696310)
chr5 (304-407)||(12375403-12375511)
chr5 (304-398)||(33545383-33545476)
chr5 (304-407)||(930934-931037)
chr5 (322-404)||(462005-462087)
chr5 (304-398)||(1572115-1572209)
chr5 (293-391)||(15106872-15106970)
chr5 (305-385)||(3294101-3294181)
[»] chr3 (26 HSPs)
chr3 (304-407)||(39739270-39739373)
chr3 (304-407)||(11483609-11483712)
chr3 (304-407)||(29226322-29226425)
chr3 (304-407)||(33528201-33528304)
chr3 (304-399)||(47864640-47864735)
chr3 (304-407)||(25165436-25165543)
chr3 (295-407)||(46798578-46798690)
chr3 (304-407)||(50381710-50381813)
chr3 (304-393)||(27817064-27817152)
chr3 (302-406)||(34225192-34225298)
chr3 (305-391)||(1325328-1325415)
chr3 (304-370)||(29645823-29645889)
chr3 (304-385)||(31435497-31435578)
chr3 (307-407)||(2259153-2259252)
chr3 (304-407)||(30162653-30162760)
chr3 (304-407)||(46247256-46247362)
chr3 (304-364)||(49429499-49429559)
chr3 (304-398)||(22602199-22602293)
chr3 (304-393)||(27471514-27471603)
chr3 (307-407)||(16141352-16141452)
chr3 (304-352)||(24651175-24651223)
chr3 (307-407)||(32421344-32421444)
chr3 (304-416)||(7239793-7239901)
chr3 (304-379)||(44062038-44062112)
chr3 (358-393)||(45510793-45510828)
chr3 (306-407)||(45431623-45431724)
[»] scaffold0001 (1 HSPs)
scaffold0001 (304-407)||(419708-419811)
[»] chr8 (28 HSPs)
chr8 (304-407)||(41454823-41454926)
chr8 (305-406)||(41845426-41845527)
chr8 (304-407)||(1032566-1032669)
chr8 (304-379)||(31153508-31153584)
chr8 (304-399)||(38289231-38289326)
chr8 (304-393)||(4259869-4259958)
chr8 (304-407)||(38063973-38064076)
chr8 (304-406)||(22652680-22652782)
chr8 (304-398)||(39104612-39104705)
chr8 (316-407)||(30466675-30466766)
chr8 (305-407)||(44828429-44828532)
chr8 (304-407)||(13906617-13906725)
chr8 (304-393)||(279993-280081)
chr8 (304-393)||(635771-635859)
chr8 (304-393)||(821574-821662)
chr8 (294-399)||(19733055-19733160)
chr8 (358-407)||(29114098-29114147)
chr8 (284-393)||(38544901-38545009)
chr8 (304-379)||(5904370-5904445)
chr8 (304-407)||(45536714-45536817)
chr8 (307-407)||(3311436-3311536)
chr8 (304-403)||(19957317-19957416)
chr8 (313-393)||(36103927-36104007)
chr8 (304-379)||(10201286-10201361)
chr8 (295-405)||(1360122-1360231)
chr8 (304-407)||(23139070-23139175)
chr8 (358-407)||(10161960-10162009)
chr8 (295-399)||(43456640-43456743)
[»] chr2 (19 HSPs)
chr2 (304-407)||(33482638-33482741)
chr2 (285-406)||(27463504-27463624)
chr2 (304-404)||(34107494-34107593)
chr2 (284-407)||(25553122-25553244)
chr2 (305-393)||(6866518-6866606)
chr2 (284-385)||(3330177-3330278)
chr2 (304-407)||(18424148-18424248)
chr2 (284-385)||(42678300-42678401)
chr2 (304-407)||(43027151-43027254)
chr2 (304-385)||(19843359-19843440)
chr2 (295-391)||(17543077-17543173)
chr2 (358-405)||(11069395-11069442)
chr2 (303-350)||(29090468-29090515)
chr2 (304-407)||(31149098-31149200)
chr2 (358-406)||(16403522-16403570)
chr2 (304-407)||(41749943-41750045)
chr2 (304-350)||(20435834-20435880)
chr2 (305-385)||(5901828-5901908)
chr2 (304-364)||(20375632-20375692)
[»] scaffold0018 (1 HSPs)
scaffold0018 (343-407)||(121834-121898)
[»] scaffold0072 (1 HSPs)
scaffold0072 (304-380)||(17729-17805)


Alignment Details
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 124 - 242
Target Start/End: Complemental strand, 25104658 - 25104539
Alignment:
Q  124 gggttgtgtatatgcaagacttgcccaaaggacagtggttcaaaatttaaagggaaattaagtgtatttttgataaattcgtggtgtaatcatttgtttt 223  Q
    |||||||||||||| |||||| || ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||    
T  25104658 gggttgtgtatatgtaagactagctcaaaggatagtggttcaaaatttaaagggaaattaagtgtatttttgttaaattcgtagtgtaatcttttgtttt 25104559  T
Q  224 tacgg-aaaaatttgaggtg 242  Q
    || || ||||||||||||||    
T  25104558 tagggaaaaaatttgaggtg 25104539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 295 - 438
Target Start/End: Complemental strand, 25104435 - 25104292
Alignment:
Q  295 tagtggtcggagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaa 394  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |   ||||||||||||||||||||||||||||||||||| | | | | |||||     
T  25104435 tagtggccggagaaattcaccttaaagatgaataaatgaggtatctggaattcgaatcctggtccctgcacatattgtgcattatccttcaccgaatgag 25104336  T
Q  395 ctaagttcatgggctcaattaacttagttatttgttcatctcac 438  Q
    ||||| ||| |||  |||||||||||||||||| ||||| ||||    
T  25104335 ctaagctcaaggggacaattaacttagttatttattcatttcac 25104292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 305 - 406
Target Start/End: Original strand, 45847923 - 45848024
Alignment:
Q  305 agaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttcat 404  Q
    ||||||||||||||||||||||||| || ||| |||| |||||||| || | |||||||||||||| |||||||| |||||||||||||  |||||||||    
T  45847923 agaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccgatccctgcacatattatgcattatcccttatcaaatgagataagttcat 45848022  T
Q  405 gg 406  Q
    ||    
T  45848023 gg 45848024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 304 - 407
Target Start/End: Original strand, 40406956 - 40407060
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcct-ggtccctgcacatattgtgcattattccttatcaaatgaactaagttc 402  Q
    |||||||||||||||||||||||||| || ||| |||| |||||||| ||  || |||||||||||||||||||||| ||||| ||||||| ||||| ||    
T  40406956 gagaaattcaccttaaagatgaataagtggggtgtccggggttcgaacccccggcccctgcacatattgtgcattatcccttaccaaatgagctaagctc 40407055  T
Q  403 atggg 407  Q
    |||||    
T  40407056 atggg 40407060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 307 - 407
Target Start/End: Complemental strand, 51974843 - 51974743
Alignment:
Q  307 aaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttcatgg 406  Q
    ||||||||||||||||| ||||| || | | |||||||||||||||| |  |||||||||||||||||||||| ||||| ||||||| ||||| ||||||    
T  51974843 aaattcaccttaaagataaataagtgggatgtccgaggttcgaatcccgacccctgcacatattgtgcattatcccttaccaaatgagctaagctcatgg 51974744  T
Q  407 g 407  Q
    |    
T  51974743 g 51974743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 16556550 - 16556447
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||||||||||||||| || ||| | || |||||||| || |  |||||||||||||||||||||| ||||| ||||||| ||||| |||    
T  16556550 gagaaattcaccttaaagatgaataagtggggtgttcggggttcgaaccccgacccctgcacatattgtgcattatcccttaccaaatgagctaagctca 16556451  T
Q  404 tggg 407  Q
    ||||    
T  16556450 tggg 16556447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 46283221 - 46283118
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||||||||||||||| || ||| |||| |||||||| || || | |||||||||||||||||||| ||||| |||||||  |||| |||    
T  46283221 gagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggccgctgcacatattgtgcattatcccttaccaaatgaggtaagctca 46283122  T
Q  404 tggg 407  Q
    ||||    
T  46283121 tggg 46283118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 36993140 - 36993037
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||||||||||||||| || ||| |||| ||||| || ||    |||| ||||||||||||||||| ||||||||||||| ||||| |||    
T  36993140 gagaaattcaccttaaagatgaataattggggtgtccggggttcaaaccccaaccccttcacatattgtgcattatcccttatcaaatgagctaagctca 36993041  T
Q  404 tggg 407  Q
    ||||    
T  36993040 tggg 36993037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 50815806 - 50815703
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||| ||||||||||  || ||| |||| |||||||| || || ||||||||| |||||||||||| | ||||||||||| ||||| |||    
T  50815806 gagaaattcacctttaagatgaatatgtggggtgtccggggttcgaaccccggcccctgcacaaattgtgcattatcctttatcaaatgagctaagctca 50815707  T
Q  404 tggg 407  Q
    ||||    
T  50815706 tggg 50815703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 305 - 407
Target Start/End: Original strand, 43362165 - 43362267
Alignment:
Q  305 agaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttcat 404  Q
    ||||||||||||||||||||||||| || ||| |||| |||||||| || |  ||||| | |||||||||||||| ||||| ||||||| ||||| ||||    
T  43362165 agaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccgacccctgaatatattgtgcattatcccttagcaaatgagctaagctcat 43362264  T
Q  405 ggg 407  Q
    |||    
T  43362265 ggg 43362267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 304 - 399
Target Start/End: Original strand, 11491215 - 11491310
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaag 399  Q
    |||||||||||||||||||||||||| || ||| |||| ||||||||  | || ||||||||| ||| |||||||| |||| |||||||| |||||    
T  11491215 gagaaattcaccttaaagatgaataagtggggtgtccggggttcgaactccggcccctgcacaaattatgcattatcccttgtcaaatgagctaag 11491310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 304 - 394
Target Start/End: Original strand, 22096387 - 22096477
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaa 394  Q
    ||||||||||||||||| |||||||| || ||| ||||  ||||||| |  || |||||||||||||||||||||| ||||| ||||||||    
T  22096387 gagaaattcaccttaaaaatgaataagtggggtgtccggagttcgaacctcggcccctgcacatattgtgcattatcccttaccaaatgaa 22096477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 406
Target Start/End: Original strand, 48404134 - 48404235
Alignment:
Q  305 agaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttcat 404  Q
    ||||||||||||||||||||||||| |||||| |||| |||||||| || |   ||| |||||||| | ||||||  |||||||||||| ||||| ||||    
T  48404134 agaaattcaccttaaagatgaataagtgaggtgtccggggttcgaaccccgacacctacacatattatacattatctcttatcaaatgagctaagctcat 48404233  T
Q  405 gg 406  Q
    ||    
T  48404234 gg 48404235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 319 - 407
Target Start/End: Original strand, 27862842 - 27862930
Alignment:
Q  319 aagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttcatggg 407  Q
    ||||||||||| || ||| |||| |||||||| ||  | ||||||||| |||||||||||| ||||||||||||| ||||| |||||||    
T  27862842 aagatgaataagtggggtgtccggggttcgaaccccagcccctgcacaaattgtgcattatcccttatcaaatgagctaagctcatggg 27862930  T

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Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 407
Target Start/End: Original strand, 8716442 - 8716489
Alignment:
Q  360 ctgcacatattgtgcattattccttatcaaatgaactaagttcatggg 407  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||    
T  8716442 ctgcacatattgtgcattatcccttatcaaatgagctaagttcatggg 8716489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 385
Target Start/End: Original strand, 45355714 - 45355794
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattcctta 385  Q
    |||||||||||||||||||||||||| || ||| |||| |||||||| || |  |||| ||||||||||||||||| |||||    
T  45355714 gagaaattcaccttaaagatgaataagtg-ggtgtccggggttcgaaccccgacccctacacatattgtgcattatccctta 45355794  T

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Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 385
Target Start/End: Original strand, 45369455 - 45369535
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattcctta 385  Q
    |||||||||||||||||||||||||| || ||| |||| |||||||| || |  |||| ||||||||||||||||| |||||    
T  45369455 gagaaattcaccttaaagatgaataagtg-ggtgtccggggttcgaaccccgacccctacacatattgtgcattatccctta 45369535  T

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Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 391
Target Start/End: Complemental strand, 42154665 - 42154578
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaat 391  Q
    |||||||||||||||||||||| ||| ||| || |||| |||||||| || |  | |||||||||||||| ||||| ||||| |||||    
T  42154665 gagaaattcaccttaaagatgattaagtgaagtgtccggggttcgaaccccgacctctgcacatattgtgaattatcccttaccaaat 42154578  T

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Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 377
Target Start/End: Original strand, 53096519 - 53096593
Alignment:
Q  304 gagaaattcaccttaaag-atgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcatt 377  Q
    |||||||||||||| ||| |||||||| || ||| || ||||||||||  || ||||||||||||||||||||||    
T  53096519 gagaaattcacctttaaggatgaataagtggggtgtctgaggttcgaacactagtccctgcacatattgtgcatt 53096593  T

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Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 407
Target Start/End: Complemental strand, 23449018 - 23448969
Alignment:
Q  358 ccctgcacatattgtgcattattccttatcaaatgaactaagttcatggg 407  Q
    |||||||||||||||||||||| ||||| ||||| | |||||||||||||    
T  23449018 ccctgcacatattgtgcattatcccttaccaaataagctaagttcatggg 23448969  T

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Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 385
Target Start/End: Original strand, 29889774 - 29889855
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattcctta 385  Q
    |||||||||||||||||  |||||||||| || |||||| ||||||| || || ||||||| ||| | |||||||| |||||    
T  29889774 gagaaattcaccttaaatgtgaataaatggggcatccgaagttcgaaccccggcccctgcatataatatgcattatccctta 29889855  T

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Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 23771291 - 23771339
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatc 352  Q
    |||| |||||| |||||||||||||| |||||| |||||||||||||||    
T  23771291 gagagattcactttaaagatgaataagtgaggtgtccgaggttcgaatc 23771339  T

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Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 407
Target Start/End: Original strand, 2832071 - 2832170
Alignment:
Q  308 aattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttcatggg 407  Q
    |||||||||||||||||||||| || ||| |  | |||||||| || |  ||||||||||||||||||| |  ||||| || |||| ||||| |||||||    
T  2832071 aattcaccttaaagatgaataagtggggtgtttggggttcgaaccccgacccctgcacatattgtgcatcaccccttaccagatgagctaagctcatggg 2832170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 404
Target Start/End: Original strand, 13210155 - 13210260
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccga------ggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaacta 397  Q
    ||||||||||||||||| |||||||| |||||| ||||       |||||||| || || |||||||||||||||||||||| ||| | ||||||| |||    
T  13210155 gagaaattcaccttaaa-atgaataagtgaggtgtccgtacccggggttcgaaccccggcccctgcacatattgtgcattatccctgaccaaatgagcta 13210253  T
Q  398 agttcat 404  Q
    || ||||    
T  13210254 agctcat 13210260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 38690765 - 38690662
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    ||||||||||||||||||  |||||| || ||| |||| |||||||| || |  ||||||| ||| | |||||||| ||||| ||| ||| ||||| |||    
T  38690765 gagaaattcaccttaaaggagaataagtggggtgtccggggttcgaaccccgacccctgcatataatatgcattatcccttaccaagtgagctaagctca 38690666  T
Q  404 tggg 407  Q
    ||||    
T  38690665 tggg 38690662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 350
Target Start/End: Original strand, 32470392 - 32470438
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaa 350  Q
    |||||||||| | ||||| |||||||||||||| |||||||||||||    
T  32470392 gagaaattcatcataaaggtgaataaatgaggtgtccgaggttcgaa 32470438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 407
Target Start/End: Original strand, 31261754 - 31261803
Alignment:
Q  358 ccctgcacatattgtgcattattccttatcaaatgaactaagttcatggg 407  Q
    |||| |||| |||||||||||| |||||||||||||| |||| |||||||    
T  31261754 cccttcacacattgtgcattatcccttatcaaatgaattaagctcatggg 31261803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 407
Target Start/End: Complemental strand, 39387523 - 39387474
Alignment:
Q  358 ccctgcacatattgtgcattattccttatcaaatgaactaagttcatggg 407  Q
    ||||||||| ||| |||||||| ||||| ||||||| |||||||||||||    
T  39387523 ccctgcacaaattatgcattatcccttaccaaatgagctaagttcatggg 39387474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 8e-28; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 304 - 399
Target Start/End: Complemental strand, 50065109 - 50065014
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaag 399  Q
    |||||||||||||||||||||||||| || ||| |||||| |||||| || ||||||||||||||||||||||||| ||||||||||||| |||||    
T  50065109 gagaaattcaccttaaagatgaataagtggggtgtccgagattcgaaccccggtccctgcacatattgtgcattatcccttatcaaatgagctaag 50065014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 304 - 406
Target Start/End: Original strand, 43109234 - 43109336
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||| || || ||||||||||||| |||||||| ||||| ||||||| ||||| |||    
T  43109234 gagaaattcaccttaaagatgaataaatgaggtgtccggggttcgaaccccggcccctgcacatattttgcattatcccttaccaaatgagctaagctca 43109333  T
Q  404 tgg 406  Q
    |||    
T  43109334 tgg 43109336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 304 - 407
Target Start/End: Original strand, 24134620 - 24134723
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||||||||||||||| || ||| |||| |||||||| || || |||||||||||||||||||||| ||||| ||||||| ||||| |||    
T  24134620 gagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatattgtgcattatcccttaccaaatgagctaagctca 24134719  T
Q  404 tggg 407  Q
    ||||    
T  24134720 tggg 24134723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 305 - 407
Target Start/End: Original strand, 34702310 - 34702412
Alignment:
Q  305 agaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttcat 404  Q
    ||||||||| ||||||||||||||| |||||| |||| |||||||| || || |||||||||||||||||||||| ||||| ||||||| ||||| ||||    
T  34702310 agaaattcatcttaaagatgaataagtgaggtgtccggggttcgaaccccggcccctgcacatattgtgcattatcccttaccaaatgagctaagctcat 34702409  T
Q  405 ggg 407  Q
    |||    
T  34702410 ggg 34702412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 295 - 405
Target Start/End: Complemental strand, 8893968 - 8893858
Alignment:
Q  295 tagtggtcggagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaa 394  Q
    ||||||| ||||||||||||||||||||||||||| || ||| |  | |||||||| || |  ||||| |||||||||||||||| ||||| ||||||||    
T  8893968 tagtggttggagaaattcaccttaaagatgaataagtggggtgtttggggttcgaaccccgacccctgtacatattgtgcattatcccttaccaaatgaa 8893869  T
Q  395 ctaagttcatg 405  Q
    ||||| |||||    
T  8893868 ctaagctcatg 8893858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 50011606 - 50011503
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||||||||||||||| || | | || | |||||||| ||  | |||||||||||||||||||||| ||||| ||||||| ||||| |||    
T  50011606 gagaaattcaccttaaagatgaataagtgggatgtctggggttcgaaccccagcccctgcacatattgtgcattatcccttaccaaatgagctaagctca 50011507  T
Q  404 tggg 407  Q
    ||||    
T  50011506 tggg 50011503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 304 - 393
Target Start/End: Original strand, 14262717 - 14262806
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatga 393  Q
    |||||||||||||||||||||||||| |  ||| |||| |||||||| || |  ||||||| |||||||||||||| |||||||||||||    
T  14262717 gagaaattcaccttaaagatgaataagtagggtgtccggggttcgaaccccgacccctgcatatattgtgcattatcccttatcaaatga 14262806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 304 - 407
Target Start/End: Original strand, 15417813 - 15417916
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||| ||||||||||||||| || ||| |||||| |||||| ||  | |||| ||||||||||||||||| | ||| ||||||| ||||| |||    
T  15417813 gagaaattcatcttaaagatgaataagtggggtgtccgagcttcgaaccccagcccctacacatattgtgcattatcctttaccaaatgagctaagctca 15417912  T
Q  404 tggg 407  Q
    ||||    
T  15417913 tggg 15417916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 304 - 391
Target Start/End: Original strand, 42937225 - 42937312
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaat 391  Q
    |||||||||||||||||||||||||||| |||| || || |||||||  |    |||||||||||||||||||||||||||| |||||    
T  42937225 gagaaattcaccttaaagatgaataaataaggtgtctgaagttcgaactccaacccctgcacatattgtgcattattccttaccaaat 42937312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 304 - 407
Target Start/End: Original strand, 48497209 - 48497312
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||| ||||||||||||||||||||  || |||| | ||||||  | || |||||||||||||||||||||| ||||| ||||||| ||||  |||    
T  48497209 gagaaatttaccttaaagatgaataaatggagtgtccgggattcgaactccggcccctgcacatattgtgcattatcccttaccaaatgagctaaactca 48497308  T
Q  404 tggg 407  Q
    ||||    
T  48497309 tggg 48497312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 49620071 - 49619968
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    ||||||||||| |||||||||||||| || ||| |||| |||  ||| || |  |||||||||||||||||||||| ||||| ||||||| ||||| |||    
T  49620071 gagaaattcactttaaagatgaataagtggggtgtccggggtctgaaccccgacccctgcacatattgtgcattatcccttaccaaatgagctaagctca 49619972  T
Q  404 tggg 407  Q
    ||||    
T  49619971 tggg 49619968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 304 - 402
Target Start/End: Complemental strand, 19424145 - 19424047
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttc 402  Q
    |||||||||||||||||| ||||||| || ||| |||| |||||||| || |  ||||||| ||| | |||||||| ||||||||||||| ||||||||    
T  19424145 gagaaattcaccttaaaggtgaataagtggggtgtccggggttcgaaccccgacccctgcatataatatgcattatcccttatcaaatgagctaagttc 19424047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 404
Target Start/End: Original strand, 25800330 - 25800429
Alignment:
Q  305 agaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttcat 404  Q
    ||||||||||||| ||||||||||| || ||| |||| |||| ||| || || |||| || | |||||||||||| ||||| | ||||||||||||||||    
T  25800330 agaaattcacctttaagatgaataagtggggtgtccggggttggaaccccggaccctacataaattgtgcattatcccttaccgaatgaactaagttcat 25800429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 305 - 407
Target Start/End: Complemental strand, 7438719 - 7438617
Alignment:
Q  305 agaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttcat 404  Q
    ||||||||||||| ||||||||||| || ||| ||||  ||||||| || |  |||| |||| |||||||||||| ||||| ||||||| ||||| ||||    
T  7438719 agaaattcacctttaagatgaataagtggggtgtccggagttcgaaccccgacccctacacaaattgtgcattatcccttaccaaatgagctaagctcat 7438620  T
Q  405 ggg 407  Q
    |||    
T  7438619 ggg 7438617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 304 - 394
Target Start/End: Original strand, 25031493 - 25031583
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaa 394  Q
    |||||||||||||||||||||||||| || ||| ||||   |||||| || || ||||||||||||| ||||||||  |||| ||||||||    
T  25031493 gagaaattcaccttaaagatgaataagtggggtgtccggaattcgaaccccggcccctgcacatattatgcattatctcttaccaaatgaa 25031583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 393
Target Start/End: Original strand, 4684177 - 4684262
Alignment:
Q  308 aattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatga 393  Q
    ||||||||||||||||||||||||| |||||||||  |||||| || |  |||| || ||||||| |||||| ||||| |||||||    
T  4684177 aattcaccttaaagatgaataaatggggtatccgaacttcgaaccccgacccctacatatattgtacattatcccttaccaaatga 4684262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 27054795 - 27054686
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggt----atcc--gaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaacta 397  Q
    |||||||||||||||||||||||||| ||||||    || |  | |||||||| || || ||||||| |||||||||||||| ||||| ||||||| |||    
T  27054795 gagaaattcaccttaaagatgaataagtgaggtgcctatgccgggggttcgaaccccggcccctgcagatattgtgcattatcccttaccaaatgagcta 27054696  T
Q  398 agttcatggg 407  Q
    || |||||||    
T  27054695 agctcatggg 27054686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 407
Target Start/End: Original strand, 23368731 - 23368831
Alignment:
Q  307 aaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttcatgg 406  Q
    ||||||||||| ||  ||||||| || ||| |||| ||||||||    |||||||||||| | |||||||||| ||||||||||||| ||||| ||||||    
T  23368731 aaattcacctttaatgtgaataagtggggtgtccggggttcgaacatcggtccctgcacaaaatgtgcattatcccttatcaaatgagctaagctcatgg 23368830  T
Q  407 g 407  Q
    |    
T  23368831 g 23368831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 407
Target Start/End: Original strand, 12973275 - 12973377
Alignment:
Q  305 agaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttcat 404  Q
    ||||||| ||||||||||||||||| || ||| || |  ||| |||||  || ||||||| |||||||||||||| ||||| ||||||| ||||  ||||    
T  12973275 agaaatttaccttaaagatgaataagtggggtgtcaggagtttgaatctcggcccctgcatatattgtgcattatcccttaccaaatgagctaaactcat 12973374  T
Q  405 ggg 407  Q
    |||    
T  12973375 ggg 12973377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 407
Target Start/End: Complemental strand, 47651917 - 47651868
Alignment:
Q  358 ccctgcacatattgtgcattattccttatcaaatgaactaagttcatggg 407  Q
    |||||||||||||||||||||| ||||| ||||||| ||||| |||||||    
T  47651917 ccctgcacatattgtgcattatcccttaccaaatgagctaagctcatggg 47651868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 393
Target Start/End: Original strand, 52164367 - 52164456
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatga 393  Q
    ||||||||||||||||| || ||||| || ||| ||||   |||||| || | |||||||||||||||||||||||  |||| |||||||    
T  52164367 gagaaattcaccttaaaaattaataagtggggtgtccggaattcgaaccccgatccctgcacatattgtgcattatctcttaccaaatga 52164456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 407
Target Start/End: Original strand, 25585293 - 25585405
Alignment:
Q  295 tagtggtcggagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaa 394  Q
    |||||||  |||||||||||||  ||||| ||||| |  |||||| ||| || |||  || | ||||||||||||||||||| || | ||| ||||||||    
T  25585293 tagtggttagagaaattcacctgtaagataaataagtagggtatctgagatttgaactctagcccctgcacatattgtgcatcatcctttaccaaatgaa 25585392  T
Q  395 ctaagttcatggg 407  Q
    ||||| |||||||    
T  25585393 ctaagctcatggg 25585405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 407
Target Start/End: Original strand, 35527390 - 35527434
Alignment:
Q  363 cacatattgtgcattattccttatcaaatgaactaagttcatggg 407  Q
    ||||||||||||||||| ||||| ||||||| |||||||||||||    
T  35527390 cacatattgtgcattatcccttaccaaatgagctaagttcatggg 35527434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 39304250 - 39304302
Alignment:
Q  355 ggtccctgcacatattgtgcattattccttatcaaatgaactaagttcatggg 407  Q
    |||||||||||||||| |||||||| ||||| ||||||| ||||| |||||||    
T  39304250 ggtccctgcacatattatgcattatcccttaccaaatgagctaagctcatggg 39304302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 407
Target Start/End: Original strand, 24253639 - 24253742
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||| |||||||  |||||| | || | || ||||||||||||| |  ||||||| | ||| |||||||| ||||||||| ||| ||||| |||    
T  24253639 gagaaattcatcttaaaggcgaataagtaagatgtctgaggttcgaatcccgacccctgcataaattatgcattatcccttatcaagtgagctaagctca 24253738  T
Q  404 tggg 407  Q
    ||||    
T  24253739 tggg 24253742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 399
Target Start/End: Original strand, 35195607 - 35195702
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaag 399  Q
    |||||||| ||||||||| ||||||| ||  || | || |||||||| ||||||||||||| ||| | |||||||| |||||| || ||| |||||    
T  35195607 gagaaatttaccttaaaggtgaataagtggagtgtacggggttcgaaccctggtccctgcatataatatgcattatcccttattaagtgagctaag 35195702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 40061542 - 40061439
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    ||||||| |||||||||||||||||| || ||| ||||  ||||||| ||  | ||||  |||||||||||| ||| ||||| |||||||  |||| |||    
T  40061542 gagaaatccaccttaaagatgaataagtggggtgtccggagttcgaaccccagcccctatacatattgtgcactatcccttaccaaatgagttaagctca 40061443  T
Q  404 tggg 407  Q
    ||||    
T  40061442 tggg 40061439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 350
Target Start/End: Original strand, 16985931 - 16985977
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaa 350  Q
    |||||||||||||||||||||||||| | |||| |||| ||||||||    
T  16985931 gagaaattcaccttaaagatgaataagttaggtgtccggggttcgaa 16985977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 350
Target Start/End: Complemental strand, 21947290 - 21947245
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaa 350  Q
    ||||||||||| ||||| |||||||||||||||||||||| ||||||    
T  21947290 gagaaattcactttaaa-atgaataaatgaggtatccgagattcgaa 21947245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 393
Target Start/End: Complemental strand, 30735936 - 30735838
Alignment:
Q  295 tagtggtcggagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatga 393  Q
    |||||||  ||||||||||||||  |||||||||| || ||| |||  ||||| ||  | || ||||||||| |||||||||||| ||||| |||||||    
T  30735936 tagtggttagagaaattcacctttgagatgaataagtgtggtgtccagggttcaaactccggcccctgcacaaattgtgcattatcccttaccaaatga 30735838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 405
Target Start/End: Original strand, 2017681 - 2017781
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    ||||||||||||||||| ||||| || || ||| |||| | |||||| ||  | |  ||||||||||||||||||| ||||| ||||||| ||||| |||    
T  2017681 gagaaattcaccttaaa-atgaacaagtggggtgtccgggattcgaaccccagcctatgcacatattgtgcattatcccttaccaaatgagctaagctca 2017779  T
Q  404 tg 405  Q
    ||    
T  2017780 tg 2017781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 384
Target Start/End: Complemental strand, 52720792 - 52720703
Alignment:
Q  295 tagtggtcggagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattcctt 384  Q
    |||||||  ||||||||||| |||||||||||||| || ||| || | |||||||| ||  |||||| |||| ||| |||||||| ||||    
T  52720792 tagtggttagagaaattcactttaaagatgaataagtgtggtgtctggggttcgaaccccagtccctacacacattatgcattatccctt 52720703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 392
Target Start/End: Original strand, 3347699 - 3347787
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatg 392  Q
    |||||||||||||||||||||||||| || ||| | || |||||||| || |   |||| ||||||||| |||||| | ||| ||||||    
T  3347699 gagaaattcaccttaaagatgaataagtggggtgtacggggttcgaaccccgactcctgaacatattgtacattatccattaccaaatg 3347787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 40273920 - 40273817
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||||||||||||||| || ||| |||| |||||||| || || |||||||||||||||||||||| ||||| ||||||| ||||| |||    
T  40273920 gagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatattgtgcattatcccttaccaaatgagctaagctca 40273821  T
Q  404 tggg 407  Q
    ||||    
T  40273820 tggg 40273817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 24030084 - 24029981
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    ||||||||||||||||||||||||||||| ||| || | |||||||| || || |||| ||||||||||||||||| ||||||||||||| ||||  |||    
T  24030084 gagaaattcaccttaaagatgaataaatggggtgtctggggttcgaaccccggcccctacacatattgtgcattatcccttatcaaatgagctaaactca 24029985  T
Q  404 tggg 407  Q
    ||||    
T  24029984 tggg 24029981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 304 - 407
Target Start/End: Original strand, 48433706 - 48433809
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||||||||||||||| || ||| |||| |||| ||| || || |||||||||||||||||||||| ||||| ||||||| ||||| |||    
T  48433706 gagaaattcaccttaaagatgaataagtggggtgtccggggtttgaaccccggcccctgcacatattgtgcattatcccttaccaaatgagctaagctca 48433805  T
Q  404 tggg 407  Q
    ||||    
T  48433806 tggg 48433809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 304 - 406
Target Start/End: Complemental strand, 12166181 - 12166079
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||||||||||||||| || ||| || | |||||||| ||  | ||||||||| |||||||||||| ||||| ||||||| |||||||||    
T  12166181 gagaaattcaccttaaagatgaataagtggggtgtctggggttcgaaccccagcccctgcacaaattgtgcattatcccttaccaaatgagctaagttca 12166082  T
Q  404 tgg 406  Q
    |||    
T  12166081 tgg 12166079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 304 - 405
Target Start/End: Complemental strand, 31793567 - 31793466
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    ||||||| |||||||||||||||||| || ||| |||| |||||||| || |  |||||||||||||||||||||| ||||| ||||||| ||||| |||    
T  31793567 gagaaatccaccttaaagatgaataagtggggtgtccggggttcgaaccccgacccctgcacatattgtgcattatcccttaacaaatgagctaagctca 31793468  T
Q  404 tg 405  Q
    ||    
T  31793467 tg 31793466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 38378318 - 38378215
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    ||||||||||||||||| |||||||| || ||| |||| ||||| || || || |||||||||||||||||||||| ||||| ||||| ||||||  |||    
T  38378318 gagaaattcaccttaaaaatgaataagtggggtgtccggggttcaaaccccggcccctgcacatattgtgcattatcccttaccaaataaactaaactca 38378219  T
Q  404 tggg 407  Q
    ||||    
T  38378218 tggg 38378215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 305 - 399
Target Start/End: Complemental strand, 23602372 - 23602278
Alignment:
Q  305 agaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaag 399  Q
    ||||||||||||||||| ||||||| |||||| |||| ||||||||  | |||| ||||| ||| | |||||||||||||||||||||| |||||    
T  23602372 agaaattcaccttaaaggtgaataagtgaggtgtccggggttcgaactccggtcactgcatataatatgcattattccttatcaaatgagctaag 23602278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 306 - 406
Target Start/End: Complemental strand, 42554731 - 42554631
Alignment:
Q  306 gaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttcatg 405  Q
    |||||||||| ||||||||||||| |  |||||||| |||||||| ||    |||||||||||||||||||||| ||||| ||||||| ||||| |||||    
T  42554731 gaaattcaccataaagatgaataagtcgggtatccggggttcgaaccccaacccctgcacatattgtgcattatcccttaccaaatgagctaagctcatg 42554632  T
Q  406 g 406  Q
    |    
T  42554631 g 42554631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 304 - 407
Target Start/End: Original strand, 23824588 - 23824690
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||||||||||||||| |  ||| |||| |||||||| |  || || ||||||||||||||||||| ||||| ||||||| ||||| |||    
T  23824588 gagaaattcaccttaaagatgaataagtagggtgtccg-ggttcgaacctcggcccatgcacatattgtgcattatcccttaccaaatgagctaagctca 23824686  T
Q  404 tggg 407  Q
    ||||    
T  23824687 tggg 23824690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 304 - 405
Target Start/End: Original strand, 3889796 - 3889898
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctgg-tccctgcacatattgtgcattattccttatcaaatgaactaagttc 402  Q
    |||||||||||||| ||||||||||| || ||| |||| |||||||| |||||  ||||||| ||||||| |||||| |||| |||||||| ||||| ||    
T  3889796 gagaaattcacctttaagatgaataagtggggtgtccggggttcgaaccctggccccctgcatatattgtacattatcccttgtcaaatgagctaagctc 3889895  T
Q  403 atg 405  Q
    |||    
T  3889896 atg 3889898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 304 - 390
Target Start/End: Original strand, 4956088 - 4956174
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaa 390  Q
    |||||||||||||||||||||||||| || ||| |||  |||||||| || |  |||||||||||||||||||||| ||||| ||||    
T  4956088 gagaaattcaccttaaagatgaataagtggggtgtccagggttcgaaccccgacccctgcacatattgtgcattatcccttaccaaa 4956174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 393
Target Start/End: Original strand, 34322020 - 34322109
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatga 393  Q
    ||||||||||| || |||||||||||||| ||| || | | ||| || ||  |||||||||||||||||||||||| |||||||||||||    
T  34322020 gagaaattcacgtttaagatgaataaatggggtgtctgggattcaaaccccagtccctgcacatattgtgcattatcccttatcaaatga 34322109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 27454111 - 27454007
Alignment:
Q  304 gagaaattcacctta-aagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttc 402  Q
    ||||||||||||||  ||||||||||| || ||| ||||||||||||| |  |  ||||||||| |||||||||||| ||||| ||||||| ||||| ||    
T  27454111 gagaaattcaccttttaagatgaataagtggggtgtccgaggttcgaacctcgacccctgcacaaattgtgcattatcccttaccaaatgagctaagctc 27454012  T
Q  403 atggg 407  Q
    |||||    
T  27454011 atggg 27454007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 403
Target Start/End: Complemental strand, 43440788 - 43440689
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||||||||||||||| || ||| || |   |||||| || |  | |||||||||||||||||||| ||||| ||||| |||||||||||    
T  43440788 gagaaattcaccttaaagatgaataagtggggtgtctggaattcgaaccccgacctctgcacatattgtgcattatcccttaccaaataaactaagttca 43440689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 305 - 407
Target Start/End: Original strand, 33248799 - 33248901
Alignment:
Q  305 agaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttcat 404  Q
    ||||||||||||||||||||||||| |  ||| |||| |||||||| || |  | ||||| ||||||||||| || ||||| ||||||| ||||| ||||    
T  33248799 agaaattcaccttaaagatgaataagtagggtgtccggggttcgaaccccgacctctgcatatattgtgcatcatcccttaccaaatgagctaagctcat 33248898  T
Q  405 ggg 407  Q
    |||    
T  33248899 ggg 33248901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 284 - 404
Target Start/End: Complemental strand, 37918799 - 37918679
Alignment:
Q  284 gtcaaataatttagtggtcggagaaattcaccttaaagatgaataaatgaggtatccgagg-ttcgaatcctggtccctgcacatattgtgcattattcc 382  Q
    ||||| || |||||||||  ||||||||||||| |||||||||||| |||||| |||| || |||||| || |   ||| ||||| ||||||||||| ||    
T  37918799 gtcaagtagtttagtggttagagaaattcacctaaaagatgaataagtgaggtgtccggggattcgaaccccgacgcctacacat-ttgtgcattatccc 37918701  T
Q  383 ttatcaaatgaactaagttcat 404  Q
    |||||||||||  |||||||||    
T  37918700 ttatcaaatgagttaagttcat 37918679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 407
Target Start/End: Original strand, 42338297 - 42338346
Alignment:
Q  358 ccctgcacatattgtgcattattccttatcaaatgaactaagttcatggg 407  Q
    |||||||||||||||||||||||||||| ||||||| ||||| |||||||    
T  42338297 ccctgcacatattgtgcattattccttaccaaatgagctaagctcatggg 42338346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 393
Target Start/End: Complemental strand, 28712466 - 28712378
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatga 393  Q
    ||||||||||| |||||||||||||||||||| |||| |  |||||| |  | |||||||||||||| | |||||| ||||| |||||||    
T  28712466 gagaaattcactttaaagatgaataaatgaggcatccaaaattcgaa-ctcgatccctgcacatattatacattatcccttaccaaatga 28712378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 350
Target Start/End: Original strand, 13295370 - 13295417
Alignment:
Q  303 ggagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaa 350  Q
    ||||||||||||||||||| ||||  |||||| |||||||||||||||    
T  13295370 ggagaaattcaccttaaaggtgaaataatgagatatccgaggttcgaa 13295417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 407
Target Start/End: Original strand, 26456053 - 26456104
Alignment:
Q  356 gtccctgcacatattgtgcattattccttatcaaatgaactaagttcatggg 407  Q
    |||||||||||||||||||||| | ||||| ||||||| ||||| |||||||    
T  26456053 gtccctgcacatattgtgcattgtcccttaccaaatgagctaagctcatggg 26456104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 370
Target Start/End: Original strand, 42841777 - 42841843
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatatt 370  Q
    |||||||||||||| ||||||||||| || ||| || | |||||||| || ||||| ||||||||||    
T  42841777 gagaaattcacctttaagatgaataagtggggtgtctggggttcgaaccccggtccttgcacatatt 42841843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 393
Target Start/End: Original strand, 3961404 - 3961493
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatga 393  Q
    |||||||||||||| || |||||||| || | | |||| |||||||| || || | ||||||| |||||||||||| | ||| |||||||    
T  3961404 gagaaattcacctttaaaatgaataagtgggatgtccggggttcgaaccccggcctctgcacaaattgtgcattatcctttaccaaatga 3961493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 405
Target Start/End: Complemental strand, 44986689 - 44986592
Alignment:
Q  308 aattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttcatg 405  Q
    |||||||||| |||||| |||| || ||| |  | ||||||||||| || | ||||||  |||||||||||| ||||| ||||||| ||||| |||||    
T  44986689 aattcacctttaagatggataagtggggtgtttggggttcgaatcccggccactgcactaattgtgcattatcccttaccaaatgagctaagctcatg 44986592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 407
Target Start/End: Complemental strand, 46266764 - 46266664
Alignment:
Q  307 aaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttcatgg 406  Q
    ||||||||||| ||||||||||| || | | | | ||||||||| || |  ||| ||||| |||||||||||| ||||| |||||||  |||| ||||||    
T  46266764 aaattcacctttaagatgaataagtgggatgttcaaggttcgaaccccgtcccccgcacaaattgtgcattatcccttaccaaatgagttaagctcatgg 46266665  T
Q  407 g 407  Q
    |    
T  46266664 g 46266664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 304 - 407
Target Start/End: Original strand, 6228256 - 6228359
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||||||||||||||| || ||| |||| |||||||| || || |||||||||||||||||||||| ||||| ||||||| ||||| |||    
T  6228256 gagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatattgtgcattatcccttaccaaatgagctaagctca 6228355  T
Q  404 tggg 407  Q
    ||||    
T  6228356 tggg 6228359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 304 - 407
Target Start/End: Original strand, 20415558 - 20415661
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||||||||||||||| || ||| |||| |||||||| ||||| |||||||||||||||||||||| |||||  |||||| ||||  |||    
T  20415558 gagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccctggcccctgcacatattgtgcattatcccttacaaaatgagctaaactca 20415657  T
Q  404 tggg 407  Q
    ||||    
T  20415658 tggg 20415661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 304 - 407
Target Start/End: Original strand, 18903363 - 18903466
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||||||||||||||| || ||| |||| |||||||| || || |||||||||||||||| ||||| ||||  ||||||| ||||| |||    
T  18903363 gagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatattgtgtattatcccttgccaaatgagctaagctca 18903462  T
Q  404 tggg 407  Q
    ||||    
T  18903463 tggg 18903466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 295 - 399
Target Start/End: Complemental strand, 19748206 - 19748103
Alignment:
Q  295 tagtggtcggagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaa 394  Q
    |||||||| ||||||||||||||||| |||||||| || ||| |||| |||||||| ||   ||||||||||||||||||||||| ||||| |||||||     
T  19748206 tagtggtcagagaaattcaccttaaa-atgaataagtggggtgtccgtggttcgaaccccaatccctgcacatattgtgcattatcccttaccaaatgag 19748108  T
Q  395 ctaag 399  Q
    |||||    
T  19748107 ctaag 19748103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 304 - 405
Target Start/End: Original strand, 29321972 - 29322073
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||||||||| ||||| || | | || | |||||||| ||  | |||||||||||||||||||||| ||||| ||||||| |||||||||    
T  29321972 gagaaattcaccttaaagataaataagtgggatgtctggggttcgaaccccagcccctgcacatattgtgcattatcccttaccaaatgatctaagttca 29322071  T
Q  404 tg 405  Q
    ||    
T  29322072 tg 29322073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 407
Target Start/End: Original strand, 4854293 - 4854405
Alignment:
Q  295 tagtggtcggagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaa 394  Q
    |||||||  |||||||| ||||||||||||||||| || ||| |||| |||||||| || || ||||||||| ||||| |||||| ||||  |||||||     
T  4854293 tagtggttagagaaatttaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacacattgtacattatcccttgccaaatgag 4854392  T
Q  395 ctaagttcatggg 407  Q
    ||||| |||||||    
T  4854393 ctaagctcatggg 4854405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 404
Target Start/End: Original strand, 24794891 - 24794991
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||| |||||| |||||||| || | | |||| |||||||||||    |||||||||||||||||||||| ||||| ||||||| ||||| |||    
T  24794891 gagaaattcatcttaaatatgaataagtgggatgtccggggttcgaatcccaacccctgcacatattgtgcattatcccttaccaaatgagctaagctca 24794990  T
Q  404 t 404  Q
    |    
T  24794991 t 24794991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 17217057 - 17216954
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||||||||||||||| || ||| ||||  |||||||  | |  |||| |||||||| |||||||| ||||| ||||||| ||||| |||    
T  17217057 gagaaattcaccttaaagatgaataagtggggtgtccggagttcgaactccgacccctacacatattatgcattatcccttaccaaatgagctaagctca 17216958  T
Q  404 tggg 407  Q
    ||||    
T  17216957 tggg 17216954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 304 - 407
Target Start/End: Original strand, 15717004 - 15717112
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgag------gttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaacta 397  Q
    ||||||||||||||||| |||||||| |||||| |||| |      ||||||| || || |||||||||||||||||||||| ||||| ||||||| |||    
T  15717004 gagaaattcaccttaaa-atgaataagtgaggtgtccgtgcccggggttcgaaccccggcccctgcacatattgtgcattatcccttaccaaatgagcta 15717102  T
Q  398 agttcatggg 407  Q
    || |||||||    
T  15717103 agctcatggg 15717112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 304 - 398
Target Start/End: Original strand, 25091095 - 25091189
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaa 398  Q
    |||||| ||||||| ||||||||||| || ||| |||||||| |||| || |||||||| ||| |||||||||||| | ||  ||||||||||||    
T  25091095 gagaaaatcacctttaagatgaataagtggggtgtccgaggtacgaaccccggtccctgaacaaattgtgcattatcctttgccaaatgaactaa 25091189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 408
Target Start/End: Original strand, 1128412 - 1128519
Alignment:
Q  304 gagaaattcaccttaaagatga---ataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagt 400  Q
    ||||||||||||||||||||||   ||||||| ||| || | |||||||| ||    ||||||||||||| |||||||| |||||||||||||  ||||     
T  1128412 gagaaattcaccttaaagatgatgaataaatggggtgtctggggttcgaaccccaacccctgcacatattatgcattatcccttatcaaatgagttaagg 1128511  T
Q  401 tcatgggc 408  Q
    ||||||||    
T  1128512 tcatgggc 1128519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 393
Target Start/End: Complemental strand, 9357255 - 9357166
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatga 393  Q
    |||||||||||||||||| ||||||||| |||| || |  ||||||| ||  | ||||||||| ||||| |||||| |||||||||||||    
T  9357255 gagaaattcaccttaaaggtgaataaattaggtgtctggagttcgaaccccagcccctgcacaaattgtacattatcccttatcaaatga 9357166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 407
Target Start/End: Original strand, 30422095 - 30422207
Alignment:
Q  295 tagtggtcggagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaa 394  Q
    |||||| | ||||||||||||||||| || |||||||| ||| ||||  ||||||| || |  |||| |||||||||| |||||| ||||| |||||||     
T  30422095 tagtggccagagaaattcaccttaaaaataaataaatgtggtgtccggagttcgaacccggacccctacacatattgtacattatcccttaccaaatgag 30422194  T
Q  395 ctaagttcatggg 407  Q
     |||| |||||||    
T  30422195 ttaagctcatggg 30422207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 378
Target Start/End: Complemental strand, 3974540 - 3974466
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcatta 378  Q
    |||||||||||||||||||||||||| || ||  ||||| ||||||| || |  ||||||||||||| |||||||    
T  3974540 gagaaattcaccttaaagatgaataagtggggagtccgaagttcgaaccccgacccctgcacatattctgcatta 3974466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 393
Target Start/End: Complemental strand, 31637443 - 31637354
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatga 393  Q
    ||||||||||||||||| || ||||| |  ||| ||||||| ||||| || |  ||||||| |||||||||||||| || || |||||||    
T  31637443 gagaaattcaccttaaaaataaataagtagggtgtccgaggctcgaaccccgacccctgcaaatattgtgcattatcccataccaaatga 31637354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 336
Target Start/End: Complemental strand, 5948970 - 5948938
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggt 336  Q
    |||||||||||||||||||||||||| ||||||    
T  5948970 gagaaattcaccttaaagatgaataagtgaggt 5948938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 406
Target Start/End: Complemental strand, 25045785 - 25045737
Alignment:
Q  358 ccctgcacatattgtgcattattccttatcaaatgaactaagttcatgg 406  Q
    |||||||||||||||| ||||| ||||| ||||||| ||||| ||||||    
T  25045785 ccctgcacatattgtgaattatcccttaccaaatgagctaagctcatgg 25045737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 407
Target Start/End: Original strand, 28536167 - 28536267
Alignment:
Q  307 aaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttcatgg 406  Q
    ||||||||| ||||||||||||| ||| || |||||| ||| ||  | || |||||||||||||||  ||| | ||||  ||||||| ||||| ||||||    
T  28536167 aaattcaccgtaaagatgaataagtgaagtgtccgagattcaaacaccggcccctgcacatattgtatattttcccttgccaaatgagctaagctcatgg 28536266  T
Q  407 g 407  Q
    |    
T  28536267 g 28536267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 31250246 - 31250143
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||||||||||||||| || ||| |||| |||||||| || || |||||||||||||||||||||| ||||| ||||||| ||||| |||    
T  31250246 gagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatattgtgcattatcccttaccaaatgagctaagctca 31250147  T
Q  404 tggg 407  Q
    ||||    
T  31250146 tggg 31250143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 304 - 407
Target Start/End: Original strand, 38503253 - 38503356
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||||||||||||||| || ||| |||| |||||||| || || |||||||||||||||||||||| ||||| ||||||| ||||| |||    
T  38503253 gagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatattgtgcattatcccttaccaaatgagctaagctca 38503352  T
Q  404 tggg 407  Q
    ||||    
T  38503353 tggg 38503356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 304 - 404
Target Start/End: Complemental strand, 43227965 - 43227865
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||||||||||||||| || ||| |||| |||||||| || || |||||||||||||||||||||| ||||| ||||||| ||||| |||    
T  43227965 gagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatattgtgcattatcccttaccaaatgagctaagctca 43227866  T
Q  404 t 404  Q
    |    
T  43227865 t 43227865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 304 - 404
Target Start/End: Original strand, 15470617 - 15470717
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    ||||||||||||||||||||||||||||| ||| || | ||||||||||   | || ||||||||||||||||||| ||||| |||||||| |||| |||    
T  15470617 gagaaattcaccttaaagatgaataaatggggtgtctggggttcgaatctcagcccttgcacatattgtgcattatcccttaccaaatgaattaagctca 15470716  T
Q  404 t 404  Q
    |    
T  15470717 t 15470717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 42209015 - 42208913
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||||||||||||||| |||||| ||||  ||||||| ||| | |||||||||||||||| ||||| |||||  |||||| ||||| |||    
T  42209015 gagaaattcaccttaaagatgaataagtgaggtgtccggagttcgaa-cctcggccctgcacatattgtgtattatcccttactaaatgagctaagctca 42208917  T
Q  404 tggg 407  Q
    ||||    
T  42208916 tggg 42208913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 307 - 404
Target Start/End: Complemental strand, 17077457 - 17077360
Alignment:
Q  307 aaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttcat 404  Q
    ||||||||||| ||||||||||| || ||| |||| ||||||||||| |  ||||||||| |||||||||||| ||||| ||||||| ||||| ||||    
T  17077457 aaattcacctttaagatgaataagtggggtgtccggggttcgaatcccgacccctgcacaaattgtgcattatcccttaccaaatgagctaagctcat 17077360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 5039779 - 5039677
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||| ||||||||||||||||| || ||| ||||| ||||||| || || || |||||||||||| ||||| |||||| |||||||  |||| |||    
T  5039779 gagaaatttaccttaaagatgaataagtggggtgtccgaagttcgaaccccggcccttgcacatattgtacatta-tccttaccaaatgagttaagctca 5039681  T
Q  404 tggg 407  Q
    ||||    
T  5039680 tggg 5039677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 392
Target Start/End: Complemental strand, 41836139 - 41836051
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatg 392  Q
    |||||||||||||||||||||||||||||   | ||||| ||||||| || |  ||||||||||||| ||| | |||||||| ||||||    
T  41836139 gagaaattcaccttaaagatgaataaatggaatgtccgaagttcgaaccccgacccctgcacatattatgcttcattccttaccaaatg 41836051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 379
Target Start/End: Original strand, 4395847 - 4395922
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattat 379  Q
    ||||||||||||||||||||||||||||| ||| || | ||||||||  | || ||||||||| ||| ||||||||    
T  4395847 gagaaattcaccttaaagatgaataaatggggtgtcaggggttcgaactccggcccctgcacacattatgcattat 4395922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 399
Target Start/End: Original strand, 15680897 - 15680992
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaag 399  Q
    |||||||||||||||||| ||||||| || ||| ||||||||||||||  ||  | | ||| ||||| |||||||||||||| ||| ||| |||||    
T  15680897 gagaaattcaccttaaaggtgaataagtggggtgtccgaggttcgaattttgaccaccgcatatattatgcattattccttaccaagtgagctaag 15680992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 398
Target Start/End: Complemental strand, 15696310 - 15696212
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgag-----gttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaa 398  Q
    ||||||||||||||||| |||||||| |||||| |||| |     | |||||||| || |||| ||||||||||||||||| ||||||||||||| ||||    
T  15696310 gagaaattcaccttaaa-atgaataagtgaggtgtccgtgcccggggtcgaatcccggcccctacacatattgtgcattatcccttatcaaatgagctaa 15696212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 407
Target Start/End: Original strand, 12375403 - 12375511
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgag------gttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaacta 397  Q
    ||||||||||||||||| |||||||| |||||| |||| |      ||||||| || || |||||||||||||||||||||| | ||| ||||||| |||    
T  12375403 gagaaattcaccttaaa-atgaataagtgaggtgtccgtgcccggggttcgaaccccggcccctgcacatattgtgcattatccattaccaaatgagcta 12375501  T
Q  398 agttcatggg 407  Q
    || |||||||    
T  12375502 agctcatggg 12375511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 398
Target Start/End: Original strand, 33545383 - 33545476
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaa 398  Q
    ||||||||||||||||||||||||||  | ||| |||||||||| ||  | |  |||||||||||||||||||||| || || ||||||| ||||    
T  33545383 gagaaattcaccttaaagatgaataaggg-ggtgtccgaggttcaaactccgacccctgcacatattgtgcattatcccatagcaaatgagctaa 33545476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 407
Target Start/End: Original strand, 930934 - 931037
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||| ||||||||||| || | | || |||||||||| ||    |||||||||||||||||||| | ||||| | ||||| ||| | |||    
T  930934 gagaaattcacctttaagatgaataagtgggatgtctgaggttcgaaccccaacccctgcacatattgtgcattgtcccttaccgaatgagctatgctca 931033  T
Q  404 tggg 407  Q
    ||||    
T  931034 tggg 931037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 404
Target Start/End: Complemental strand, 462087 - 462005
Alignment:
Q  322 atgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttcat 404  Q
    |||||||||||| |||||   |||||||| ||| |  ||| ||||||||||||||||  ||||| ||||||| ||||||||||    
T  462087 atgaataaatgaagtatctagggttcgaaccctagctcctacacatattgtgcattaccccttaccaaatgagctaagttcat 462005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 398
Target Start/End: Complemental strand, 1572209 - 1572115
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaa 398  Q
    |||||||||||||| ||||||||||| || ||  |||| |||||||| ||  | ||||||||| | ||||||| || ||||| ||||||| ||||    
T  1572209 gagaaattcacctttaagatgaataagtggggagtccggggttcgaaccccagcccctgcacaaaatgtgcataatcccttaacaaatgagctaa 1572115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 391
Target Start/End: Original strand, 15106872 - 15106970
Alignment:
Q  293 tttagtggtcggagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaat 391  Q
    |||||||||  |||||||| |  |||||||||||||| || ||| |||| |||||||| || |  | ||||||| |||||||||||| ||||| |||||    
T  15106872 tttagtggttagagaaatttattttaaagatgaataagtggggtgtccggggttcgaaccccgacctctgcacaaattgtgcattatcccttaccaaat 15106970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 385
Target Start/End: Complemental strand, 3294181 - 3294101
Alignment:
Q  305 agaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattcctta 385  Q
    |||||||||||||||||||||||||||| | | ||||   |||||| || || ||||||| | ||| |||||||| |||||    
T  3294181 agaaattcaccttaaagatgaataaatgggttgtccggaattcgaaccccggcccctgcataaattatgcattatccctta 3294101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 39739373 - 39739270
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||||||||||||||| |||||| |||| |||||||| ||   ||||||||||||||||||||||| ||||| ||||||| ||||| |||    
T  39739373 gagaaattcaccttaaagatgaataagtgaggtgtccggggttcgaaccccaatccctgcacatattgtgcattatcccttaccaaatgagctaagctca 39739274  T
Q  404 tggg 407  Q
    ||||    
T  39739273 tggg 39739270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 11483712 - 11483609
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||||||||||||||| || ||| ||||  ||||||| ||||| ||||||||||||| |||||||| ||||| ||||||| ||||| |||    
T  11483712 gagaaattcaccttaaagatgaataagtggggtgtccggagttcgaaccctggcccctgcacatattttgcattatcccttaccaaatgagctaagctca 11483613  T
Q  404 tggg 407  Q
    ||||    
T  11483612 tggg 11483609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 29226425 - 29226322
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||||||||||||||| || ||| | || |||||||| || || ||||||||||||||||  |||| ||||| ||||||| ||||| |||    
T  29226425 gagaaattcaccttaaagatgaataagtggggtgtacggggttcgaaccccggcccctgcacatattgtgtgttatcccttaccaaatgagctaagctca 29226326  T
Q  404 tggg 407  Q
    ||||    
T  29226325 tggg 29226322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 304 - 407
Target Start/End: Original strand, 33528201 - 33528304
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||||||||||||||| || ||| || | |||||||| ||  | ||||||||| |||||||||||| ||||| ||||||| ||||| |||    
T  33528201 gagaaattcaccttaaagatgaataagtggggtgtctggggttcgaaccccagcccctgcacaaattgtgcattatcccttaccaaatgagctaagctca 33528300  T
Q  404 tggg 407  Q
    ||||    
T  33528301 tggg 33528304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 304 - 399
Target Start/End: Complemental strand, 47864735 - 47864640
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaag 399  Q
    |||||||||||||||||||||||||| || ||| |||| |||||||| ||    |||||||||||||||||||||| ||||| ||||||| |||||    
T  47864735 gagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccaacccctgcacatattgtgcattatcccttaccaaatgagctaag 47864640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 25165543 - 25165436
Alignment:
Q  304 gagaaattcaccttaaa---gatgaataaatgagg-tatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaag 399  Q
    |||||||||||||||||   ||||||||| || || | |||| |||||||| || ||||||||||||||||||||||||| ||||| ||||||| |||||    
T  25165543 gagaaattcaccttaaaaaagatgaataagtgggggtgtccggggttcgaaccccggtccctgcacatattgtgcattatcccttaccaaatgagctaag 25165444  T
Q  400 ttcatggg 407  Q
     |||||||    
T  25165443 ctcatggg 25165436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 407
Target Start/End: Complemental strand, 46798690 - 46798578
Alignment:
Q  295 tagtggtcggagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaa 394  Q
    |||||||  |||||||  ||||||||||||||||| || ||| |||  ||||||||||| || |||||||||||||||||||||| ||| | |||||||     
T  46798690 tagtggttagagaaatctaccttaaagatgaataagtggggtgtccagggttcgaatcccggcccctgcacatattgtgcattatccctcaccaaatgag 46798591  T
Q  395 ctaagttcatggg 407  Q
     |||| |||||||    
T  46798590 ttaagctcatggg 46798578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 50381813 - 50381710
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||||||||||||||| || ||| |||| | |||||| || |  ||||||| |||||||||||||| ||||| |||||||  |||| |||    
T  50381813 gagaaattcaccttaaagatgaataagtggggtgtccgggattcgaaccccgacccctgcatatattgtgcattatcccttaccaaatgagttaagctca 50381714  T
Q  404 tggg 407  Q
    ||||    
T  50381713 tggg 50381710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 393
Target Start/End: Original strand, 27817064 - 27817152
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatga 393  Q
    |||||||||| |||||||||||||||||| ||| |||| ||||||||  | || ||||||||| |||||||||||| ||||| |||||||    
T  27817064 gagaaattcaacttaaagatgaataaatggggtgtccg-ggttcgaactccggcccctgcacaaattgtgcattatcccttaccaaatga 27817152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 302 - 406
Target Start/End: Complemental strand, 34225298 - 34225192
Alignment:
Q  302 cggagaaattcaccttaaagatgaataaatgaggtatc---cgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaa 398  Q
    |||||||||||||||||||| ||||||| |||||| ||   || |||| ||||| | | |||||||||||||||||||||| ||||| ||||||| ||||    
T  34225298 cggagaaattcaccttaaaggtgaataagtgaggtgtcgtccggggtttgaatc-tagcccctgcacatattgtgcattatcccttaccaaatgagctaa 34225200  T
Q  399 gttcatgg 406  Q
    | ||||||    
T  34225199 gctcatgg 34225192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 391
Target Start/End: Original strand, 1325328 - 1325415
Alignment:
Q  305 agaaattcaccttaaagatgaataaatgagg-tatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaat 391  Q
    ||||||||| |||||||||||||||||| || | |||| ||||||||||| | |||||| | |||||||||||||| ||||| |||||    
T  1325328 agaaattcatcttaaagatgaataaatgggggtgtccggggttcgaatcccgatccctgtatatattgtgcattatcccttaccaaat 1325415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 304 - 370
Target Start/End: Original strand, 29645823 - 29645889
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatatt 370  Q
    |||||||||||||||||||||||||| || ||| |||| |||||||| || || |||||||||||||    
T  29645823 gagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatatt 29645889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 385
Target Start/End: Original strand, 31435497 - 31435578
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattcctta 385  Q
    |||||||||||||||||||||||||| || | | ||||||||||||| ||    |||| ||||||||||||||||| |||||    
T  31435497 gagaaattcaccttaaagatgaataagtgggatgtccgaggttcgaaccccaacccctacacatattgtgcattatccctta 31435578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 407
Target Start/End: Complemental strand, 2259252 - 2259153
Alignment:
Q  307 aaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttcatgg 406  Q
    ||||| ||||||||||||||||| | |||| || | |||| |||  | || |||||||||||||||||||||| ||||| ||||||| ||||| ||||||    
T  2259252 aaatttaccttaaagatgaataagt-aggtgtctggggtttgaactccggcccctgcacatattgtgcattatcccttaccaaatgagctaagctcatgg 2259154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 30162760 - 30162653
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgag-----gttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaa 398  Q
    ||||||||||||||||| |||||||| |||||| |||| |     ||||||| || || || ||||||||||||||||||| ||||| ||||||| ||||    
T  30162760 gagaaattcaccttaaa-atgaataagtgaggtgtccgtgcccgggttcgaaccccggcccttgcacatattgtgcattatcccttaccaaatgagctaa 30162662  T
Q  399 gttcatggg 407  Q
    | |||||||    
T  30162661 gctcatggg 30162653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 46247362 - 46247256
Alignment:
Q  304 gagaaattcaccttaaagatgaataaa---tgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagt 400  Q
    ||||||||||||||||||||||||||    || ||| || | |||||||| ||  | ||||||||| |||||||||||| ||||| ||||||| |||||     
T  46247362 gagaaattcaccttaaagatgaataagaagtggggtgtctggggttcgaaccccagcccctgcacaaattgtgcattatcccttaccaaatgagctaagc 46247263  T
Q  401 tcatggg 407  Q
    |||||||    
T  46247262 tcatggg 46247256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 364
Target Start/End: Complemental strand, 49429559 - 49429499
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgca 364  Q
    |||||||||||||||||| ||||||| || ||| |||| |||||||| |||||||||||||    
T  49429559 gagaaattcaccttaaaggtgaataagtggggtgtccggggttcgaaccctggtccctgca 49429499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 398
Target Start/End: Original strand, 22602199 - 22602293
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccc-tgcacatattgtgcattattccttatcaaatgaactaa 398  Q
    |||||||||||||||||||||||||| || | | || | | |||||| ||| ||||| | ||||||||||||||||||||||| ||||||| ||||    
T  22602199 gagaaattcaccttaaagatgaataagtgcgatgtctgggattcgaa-cctcgtcccctacacatattgtgcattattccttaccaaatgagctaa 22602293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 393
Target Start/End: Complemental strand, 27471603 - 27471514
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatga 393  Q
    |||||||| ||||||||||||||||| || ||| |||| |||||||| ||    ||||| ||||||| |||||||| ||||| |||||||    
T  27471603 gagaaatttaccttaaagatgaataagtggggtgtccggggttcgaaccccaacccctgtacatattatgcattatcccttaccaaatga 27471514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 407
Target Start/End: Original strand, 16141352 - 16141452
Alignment:
Q  307 aaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttcatgg 406  Q
    ||||| ||||| ||||||||||| || ||| || |  ||||||| ||  | || || |||||||||||||||| ||||||||||||||||| | ||||||    
T  16141352 aaatttacctttaagatgaataagtggggtgtctggagttcgaaccccagcccttgtacatattgtgcattatcccttatcaaatgaactatgctcatgg 16141451  T
Q  407 g 407  Q
    |    
T  16141452 g 16141452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 24651223 - 24651175
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatc 352  Q
    |||||||||||||||||| ||||||| ||||||||| | ||||||||||    
T  24651223 gagaaattcaccttaaaggtgaataagtgaggtatctggggttcgaatc 24651175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 407
Target Start/End: Complemental strand, 32421444 - 32421344
Alignment:
Q  307 aaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttcatgg 406  Q
    ||||||| ||||||||||||||| || ||  | ||||||||||| || |  ||||||| ||||| |||||||| ||||| || |||| ||||| ||||||    
T  32421444 aaattcatcttaaagatgaataagtggggagttcgaggttcgaaccccgacccctgcatatattatgcattatcccttaccagatgagctaagctcatgg 32421345  T
Q  407 g 407  Q
    |    
T  32421344 g 32421344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 416
Target Start/End: Complemental strand, 7239901 - 7239793
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    ||||||| ||||||||||| |||||| || ||| | ||||||||||| ||    |||| ||||||||||| | ||| ||||| ||||||||||||| |||    
T  7239901 gagaaatccaccttaaagacgaataagtggggtgttcgaggttcgaaccc----ccctacacatattgtgtaatatcccttaccaaatgaactaagctca 7239806  T
Q  404 tgggctcaattaa 416  Q
     |||  |||||||    
T  7239805 cggggacaattaa 7239793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 379
Target Start/End: Original strand, 44062038 - 44062112
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattat 379  Q
    |||| ||||||||||||||||||||| || ||| | || ||||||||  | || ||||||||||||||||||||||    
T  44062038 gagacattcaccttaaagatgaataagtggggtgt-cggggttcgaactccggcccctgcacatattgtgcattat 44062112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 393
Target Start/End: Complemental strand, 45510828 - 45510793
Alignment:
Q  358 ccctgcacatattgtgcattattccttatcaaatga 393  Q
    ||||||||||||||| ||||||||||||||||||||    
T  45510828 ccctgcacatattgtacattattccttatcaaatga 45510793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 407
Target Start/End: Complemental strand, 45431724 - 45431623
Alignment:
Q  306 gaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttcatg 405  Q
    |||||||||||||||| ||||||| || ||| |||| |||||||| ||||  ||||||| | | |  ||||||| ||||| ||| ||| ||||| |||||    
T  45431724 gaaattcaccttaaaggtgaataagtggggtgtccggggttcgaaccctgacccctgcataaaatacgcattatcccttaccaagtgagctaagctcatg 45431625  T
Q  406 gg 407  Q
    ||    
T  45431624 gg 45431623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 419811 - 419708
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||||||||||||||| || ||| |||| |||||||| || || ||||||||||||||| |||||| ||||| ||||||| ||||| |||    
T  419811 gagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatattgttcattatcccttaccaaatgagctaagctca 419712  T
Q  404 tggg 407  Q
    ||||    
T  419711 tggg 419708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 304 - 407
Target Start/End: Original strand, 41454823 - 41454926
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    ||||||||||| |||||||||||||| || ||| |||| |||||||| || || |||||||||||||||||||||| ||||| ||||||| ||||| |||    
T  41454823 gagaaattcacattaaagatgaataagtggggtgtccggggttcgaaccccggcccctgcacatattgtgcattatcccttaccaaatgagctaagctca 41454922  T
Q  404 tggg 407  Q
    ||||    
T  41454923 tggg 41454926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 305 - 406
Target Start/End: Original strand, 41845426 - 41845527
Alignment:
Q  305 agaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttcat 404  Q
    |||||||||||||||||||||||||||  ||| | || |||||||| || | ||||||||||||||||||||||| ||||| ||||||| ||||| ||||    
T  41845426 agaaattcaccttaaagatgaataaatagggtgttcggggttcgaaccccgatccctgcacatattgtgcattatcccttaccaaatgagctaagctcat 41845525  T
Q  405 gg 406  Q
    ||    
T  41845526 gg 41845527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 1032669 - 1032566
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||||||||||||||| || ||| || | |||||||| ||  | |||||||||||||||||||||| ||||| ||||||| ||||| |||    
T  1032669 gagaaattcaccttaaagatgaataagtggggtgtctggggttcgaaccccagcccctgcacatattgtgcattatcccttaccaaatgagctaagctca 1032570  T
Q  404 tggg 407  Q
    ||||    
T  1032569 tggg 1032566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 304 - 379
Target Start/End: Complemental strand, 31153584 - 31153508
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgagg-tatccgaggttcgaatcctggtccctgcacatattgtgcattat 379  Q
    ||||||| ||||||||||||||||||||| || | |||||||||||||||| || ||||||||||||||||||||||    
T  31153584 gagaaatccaccttaaagatgaataaatgggggtgtccgaggttcgaatcccggcccctgcacatattgtgcattat 31153508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 304 - 399
Target Start/End: Original strand, 38289231 - 38289326
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaag 399  Q
    |||||||||||||||||||||||||| || ||| |  |||||||||| || |  |||||||||||||||||||||| ||||| ||||||| |||||    
T  38289231 gagaaattcaccttaaagatgaataagtggggtgtttgaggttcgaaccccgacccctgcacatattgtgcattatcccttaccaaatgagctaag 38289326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 304 - 393
Target Start/End: Complemental strand, 4259958 - 4259869
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatga 393  Q
    |||||||||||||||||||||||||| || ||  |||| |||| ||| || || |||||||||||||||||||||| ||||| |||||||    
T  4259958 gagaaattcaccttaaagatgaataagtggggagtccggggttggaaccccggcccctgcacatattgtgcattatcccttaccaaatga 4259869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 38064076 - 38063973
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||||||||||||||| || ||| || | ||||| |  ||  ||||||||||| |||||||||||| ||||| |||||||| |||| |||    
T  38064076 gagaaattcaccttaaagatgaataagtggggtgtctggggttcaacccccagtccctgcacaaattgtgcattatcccttaccaaatgaattaagctca 38063977  T
Q  404 tggg 407  Q
    ||||    
T  38063976 tggg 38063973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 304 - 406
Target Start/End: Complemental strand, 22652782 - 22652680
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||| || |||||||| || ||| |||| ||||||||  | || ||||||||| ||| |||||||| ||||||||||||| ||||| |||    
T  22652782 gagaaattcacctttaacatgaataattggggtgtccggggttcgaacaccggcccctgcacaaattatgcattatcccttatcaaatgagctaagctca 22652683  T
Q  404 tgg 406  Q
    |||    
T  22652682 tgg 22652680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 304 - 398
Target Start/End: Complemental strand, 39104705 - 39104612
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaa 398  Q
    ||||||| |||||||||||||||||| || ||| |||| |||||||| || || | |||||||||||||||||||| ||||| ||||||| ||||    
T  39104705 gagaaatccaccttaaagatgaataagtg-ggtgtccggggttcgaaccccggccgctgcacatattgtgcattatcccttaccaaatgagctaa 39104612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 407
Target Start/End: Complemental strand, 30466766 - 30466675
Alignment:
Q  316 ttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttcatggg 407  Q
    |||||||||||||| || ||| || |||||||||| ||  | |||||||||||||||||||||  ||||| ||||||| ||||| |||||||    
T  30466766 ttaaagatgaataagtggggtgtctgaggttcgaaccccagcccctgcacatattgtgcattagcccttaccaaatgagctaagctcatggg 30466675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 407
Target Start/End: Original strand, 44828429 - 44828532
Alignment:
Q  305 agaaattcaccttaaa-gatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||||| ||||||||| || ||| || | |||||||| ||  | ||||||||| |||||||||||| ||||| ||||||| ||||| |||    
T  44828429 agaaattcaccttaaaagatgaataagtgtggtgtctggggttcgaaccccagaccctgcacaaattgtgcattatcccttaccaaatgagctaagctca 44828528  T
Q  404 tggg 407  Q
    ||||    
T  44828529 tggg 44828532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 304 - 407
Target Start/End: Original strand, 13906617 - 13906725
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgag------gttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaacta 397  Q
    ||||||||||||||||| |||||||| |||||| |||| |      ||||||| || || |||||||||||||||||||||| ||||| ||||||| |||    
T  13906617 gagaaattcaccttaaa-atgaataagtgaggtgtccgtgcccggggttcgaaccccggcccctgcacatattgtgcattatcccttaccaaatgagcta 13906715  T
Q  398 agttcatggg 407  Q
    || |||||||    
T  13906716 agctcatggg 13906725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 393
Target Start/End: Original strand, 279993 - 280081
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatga 393  Q
    ||||||||||||||||| ||||||||||  ||| |||| |||||||| |||   ||||||||||||||| |||||| ||||| |||||||    
T  279993 gagaaattcaccttaaaaatgaataaattgggtgtccggggttcgaaccct-acccctgcacatattgtacattatcccttaccaaatga 280081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 393
Target Start/End: Complemental strand, 635859 - 635771
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatga 393  Q
    ||||||||||||||||| ||||||||||  ||| |||| |||||||| |||   ||||||||||||||| |||||| ||||| |||||||    
T  635859 gagaaattcaccttaaaaatgaataaattgggtgtccggggttcgaaccct-acccctgcacatattgtacattatcccttaccaaatga 635771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 393
Target Start/End: Complemental strand, 821662 - 821574
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatga 393  Q
    ||||||||||||||||| ||||||||||  ||| |||| |||||||| |||   ||||||||||||||| |||||| ||||| |||||||    
T  821662 gagaaattcaccttaaaaatgaataaattgggtgtccggggttcgaaccct-acccctgcacatattgtacattatcccttaccaaatga 821574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 294 - 399
Target Start/End: Original strand, 19733055 - 19733160
Alignment:
Q  294 ttagtggtcggagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatga 393  Q
    ||||||||  |||||||||||||||||||||||||| | |||| | || | |||||| || |  ||||||| ||||| |||||||| ||||| |||||||    
T  19733055 ttagtggttagagaaattcaccttaaagatgaataatttaggtgttcgggattcgaaccccgacccctgcatatattatgcattatcccttaccaaatga 19733154  T
Q  394 actaag 399  Q
     |||||    
T  19733155 gctaag 19733160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 407
Target Start/End: Complemental strand, 29114147 - 29114098
Alignment:
Q  358 ccctgcacatattgtgcattattccttatcaaatgaactaagttcatggg 407  Q
    ||||||||| |||||||||||| ||||||||||||| |||||||||||||    
T  29114147 ccctgcacaaattgtgcattatcccttatcaaatgagctaagttcatggg 29114098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 284 - 393
Target Start/End: Original strand, 38544901 - 38545009
Alignment:
Q  284 gtcaaataatttagtggtcggagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattcct 383  Q
    ||||| || |||||||||  ||||||| |||||||||||| ||||| || ||| | || | |||||| |||| ||| ||||||||||||||||||| |||    
T  38544901 gtcaagtagtttagtggttagagaaatccaccttaaagataaataagtg-ggtgttcgggattcgaaccctgatccatgcacatattgtgcattatccct 38544999  T
Q  384 tatcaaatga 393  Q
    || |||||||    
T  38545000 taccaaatga 38545009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 379
Target Start/End: Original strand, 5904370 - 5904445
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattat 379  Q
    |||||||||| ||||||||||||||| || | | |||| |||||||| || |  ||||||||||||||||||||||    
T  5904370 gagaaattcatcttaaagatgaataagtgggatgtccggggttcgaaccccgtcccctgcacatattgtgcattat 5904445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 45536817 - 45536714
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||  | ||||||||||| || ||| |||| ||||||||  | || ||||||||| ||| |||||||| ||||||||||||| ||||  |||    
T  45536817 gagaaattcactattaagatgaataagtggggtgtccggggttcgaactccggcccctgcacaaattttgcattatcccttatcaaatgacctaacctca 45536718  T
Q  404 tggg 407  Q
    ||||    
T  45536717 tggg 45536714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 407
Target Start/End: Complemental strand, 3311536 - 3311436
Alignment:
Q  307 aaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttcatgg 406  Q
    ||||||| ||| ||||||||||| || ||| |||| |||||||| |||| |||||||| | ||||| |||||| ||||  |||||||  |||| ||||||    
T  3311536 aaattcatctttaagatgaataagtggggtgtccggggttcgaaccctgatccctgcataaattgtacattatcccttgccaaatgagttaagctcatgg 3311437  T
Q  407 g 407  Q
    |    
T  3311436 g 3311436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 403
Target Start/End: Original strand, 19957317 - 19957416
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggt-ccctgcacatattgtgcattattccttatcaaatgaactaagttc 402  Q
    |||||||||||||||||| ||||||| || ||| |||| |||||||| ||| || ||||||| ||| | |||||||| ||||| ||| ||| ||||||||    
T  19957317 gagaaattcaccttaaaggtgaataagtggggtgtccggggttcgaa-cctcgtcccctgcatataatatgcattatcccttaccaagtgagctaagttc 19957415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 393
Target Start/End: Original strand, 36103927 - 36104007
Alignment:
Q  313 accttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatga 393  Q
    ||||||||||||||||| || ||| |  | |||||||| || || |||||||||||||||||||||| | ||| |||||||    
T  36103927 accttaaagatgaataagtggggtgtttggggttcgaaccccggcccctgcacatattgtgcattatcctttaccaaatga 36104007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 379
Target Start/End: Complemental strand, 10201361 - 10201286
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattat 379  Q
    ||||||||||| |||||| |||||||||||||| |||| |||||||| || |  |||| || ||||| ||||||||    
T  10201361 gagaaattcactttaaaggtgaataaatgaggtgtccggggttcgaaccccgacccctacatatattatgcattat 10201286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 405
Target Start/End: Original strand, 1360122 - 1360231
Alignment:
Q  295 tagtggtcggagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaa 394  Q
    |||||||  ||||||||||| ||||| |||||||| || ||| |||| |||||||| ||  | |||| ||||||||||||||||| | ||  |||||||     
T  1360122 tagtggttagagaaattcactttaaa-atgaataagtggggtgtccggggttcgaaccccagcccctacacatattgtgcattatcctttgccaaatgag 1360220  T
Q  395 ctaagttcatg 405  Q
    ||||| |||||    
T  1360221 ctaagctcatg 1360231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 23139175 - 23139070
Alignment:
Q  304 gagaaattcaccttaa--agatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagtt 401  Q
    ||||||||||||||||  | |||||||| || ||| || |  ||||||| |  || ||||||||| |||||||||||| |||| |||||||| ||||| |    
T  23139175 gagaaattcaccttaataaaatgaataagtggggtgtctggtgttcgaacctcggcccctgcacacattgtgcattatcccttgtcaaatgagctaagct 23139076  T
Q  402 catggg 407  Q
    ||||||    
T  23139075 catggg 23139070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 407
Target Start/End: Complemental strand, 10162009 - 10161960
Alignment:
Q  358 ccctgcacatattgtgcattattccttatcaaatgaactaagttcatggg 407  Q
    |||||||||||||||||||||| ||||| || |||| ||||| |||||||    
T  10162009 ccctgcacatattgtgcattatcccttaccagatgagctaagctcatggg 10161960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 43456640 - 43456743
Alignment:
Q  295 tagtggtcggagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaa 394  Q
    |||||| | |||||| |||||||||| |||||||| || ||| |||| |||||||| || |  || | || |||||||||||||| ||||| |||||||     
T  43456640 tagtggacagagaaaatcaccttaaa-atgaataagtggggtgtccggggttcgaaccccgacccttacatatattgtgcattatcccttaccaaatgag 43456738  T
Q  395 ctaag 399  Q
    |||||    
T  43456739 ctaag 43456743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 304 - 407
Target Start/End: Original strand, 33482638 - 33482741
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||| ||||||||||||||| || ||| || |||||||||| |  |||||||||| ||||||||||| |||||||| ||||||| |||||||||    
T  33482638 gagaaattcatcttaaagatgaataagtggggtgtctgaggttcgaaccacggtccctgcatatattgtgcatcattccttaccaaatgagctaagttca 33482737  T
Q  404 tggg 407  Q
    ||||    
T  33482738 tggg 33482741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 285 - 406
Target Start/End: Original strand, 27463504 - 27463624
Alignment:
Q  285 tcaaataatttagtggtcggagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattcctt 384  Q
    |||| |||| |||||||  ||||||||||| |||||||||||||| || | |||| | ||||||||||| ||  |||||| |||||||||||||||||||    
T  27463504 tcaagtaatctagtggttagagaaattcactttaaagatgaataagtgggttatctg-ggttcgaatcccggctcctgcatatattgtgcattattcctt 27463602  T
Q  385 atcaaatgaactaagttcatgg 406  Q
    | ||||||| ||||| ||||||    
T  27463603 accaaatgagctaagctcatgg 27463624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 304 - 404
Target Start/End: Complemental strand, 34107593 - 34107494
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||||||||||||||| || ||| |||| |||| ||| ||||  |||||||||||||||||||||| ||||| ||||||| ||||| |||    
T  34107593 gagaaattcaccttaaagatgaataagtggggtgtccg-ggtttgaaccctgacccctgcacatattgtgcattatcccttaccaaatgagctaagctca 34107495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 284 - 407
Target Start/End: Original strand, 25553122 - 25553244
Alignment:
Q  284 gtcaaataatttagtggtcggagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattcct 383  Q
    ||||| ||||||||||||  |||||||||| ||||||||||||||| ||  ||||| ||| |||||| ||   || |||||||||||||||||||| |||    
T  25553122 gtcaagtaatttagtggttagagaaattcatcttaaagatgaataagtggagtatctgag-ttcgaaccccaatctctgcacatattgtgcattatccct 25553220  T
Q  384 tatcaaatgaactaagttcatggg 407  Q
    || |||||||| |||| |||||||    
T  25553221 taccaaatgaattaagctcatggg 25553244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 393
Target Start/End: Complemental strand, 6866606 - 6866518
Alignment:
Q  305 agaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatga 393  Q
    ||||||||||||||||||| ||||| |||||| |||| | ||||||  | ||| ||||||||||||||||||||| ||||| |||||||    
T  6866606 agaaattcaccttaaagataaataagtgaggtgtccgggattcgaactccggttcctgcacatattgtgcattatcccttaccaaatga 6866518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 385
Target Start/End: Original strand, 3330177 - 3330278
Alignment:
Q  284 gtcaaataatttagtggtcggagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattcct 383  Q
    ||||||||  ||||||||  |||||||||||||||||||||||||| || ||| |||| ||||||||  | |  | |||||||||||||||||||| |||    
T  3330177 gtcaaatagcttagtggttagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaactccgacctctgcacatattgtgcattatccct 3330276  T
Q  384 ta 385  Q
    ||    
T  3330277 ta 3330278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 407
Target Start/End: Original strand, 18424148 - 18424248
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||||||||||||||| || | | ||||  ||||||| || || |||||||||||||||||   |||||||| ||||||| ||||| |||    
T  18424148 gagaaattcaccttaaagatgaataagtgggatgtccggagttcgaaccccggcccctgcacatattgtgc---attccttaccaaatgagctaagctca 18424244  T
Q  404 tggg 407  Q
    ||||    
T  18424245 tggg 18424248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 385
Target Start/End: Original strand, 42678300 - 42678401
Alignment:
Q  284 gtcaaataatttagtggtcggagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattcct 383  Q
    ||||| |||| |||||||  |||||||||||||||||||||||||| || ||| |||| ||||||||  | | ||||| | ||||||||||||||| |||    
T  42678300 gtcaagtaatctagtggttagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaactccgatccctacgcatattgtgcattatccct 42678399  T
Q  384 ta 385  Q
    ||    
T  42678400 ta 42678401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 43027254 - 43027151
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||||||| |||||||||| ||| || | |||||||| |   |  || ||||| |||||||||||| ||||||||||||| ||||| |||    
T  43027254 gagaaattcaccttaaaggtgaataaatggggtgtctggggttcgaacctcagcacccgcacaaattgtgcattatcccttatcaaatgagctaagctca 43027155  T
Q  404 tggg 407  Q
    ||||    
T  43027154 tggg 43027151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 385
Target Start/End: Original strand, 19843359 - 19843440
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattcctta 385  Q
    |||||||||||||||||||||||||| |||||| ||   |||||||| ||||  ||||||||||||||| ||| || |||||    
T  19843359 gagaaattcaccttaaagatgaataagtgaggtgtctagggttcgaaccctgacccctgcacatattgtacatcatccctta 19843440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 391
Target Start/End: Original strand, 17543077 - 17543173
Alignment:
Q  295 tagtggtcggagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaat 391  Q
    |||||||  |||||| |||| |||||||||||||| || ||| ||||  |||||||  | || |||||||||||||||||||||| ||||| |||||    
T  17543077 tagtggttagagaaagtcacattaaagatgaataagtggggtgtccggcgttcgaactccggcccctgcacatattgtgcattatcccttaccaaat 17543173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 358 - 405
Target Start/End: Original strand, 11069395 - 11069442
Alignment:
Q  358 ccctgcacatattgtgcattattccttatcaaatgaactaagttcatg 405  Q
    |||||||||||||||||||||||||||| ||||||| ||||| |||||    
T  11069395 ccctgcacatattgtgcattattccttaccaaatgagctaagctcatg 11069442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 350
Target Start/End: Complemental strand, 29090515 - 29090468
Alignment:
Q  303 ggagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaa 350  Q
    ||||||||||||||||||||||||||| |||||| |||| ||||||||    
T  29090515 ggagaaattcaccttaaagatgaataagtgaggtgtccggggttcgaa 29090468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 407
Target Start/End: Original strand, 31149098 - 31149200
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||||||||| || || || ||| || | |||||||| |||   |||||||||||||||||||||| ||||| ||||||| ||| | |||    
T  31149098 gagaaattcaccttaaagattaaaaagtggggtgtctggggttcgaa-cctcaaccctgcacatattgtgcattatcccttaccaaatgagctatgctca 31149196  T
Q  404 tggg 407  Q
    ||||    
T  31149197 tggg 31149200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 406
Target Start/End: Complemental strand, 16403570 - 16403522
Alignment:
Q  358 ccctgcacatattgtgcattattccttatcaaatgaactaagttcatgg 406  Q
    |||||||||||||||||||||| ||||| ||||||| ||||| ||||||    
T  16403570 ccctgcacatattgtgcattatcccttaccaaatgagctaagctcatgg 16403522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 407
Target Start/End: Complemental strand, 41750045 - 41749943
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttca 403  Q
    |||||||||||||||||||||||||| || ||| |||| ||||| || || |  |||| |||| |||||||||||| ||||  ||||||| || || |||    
T  41750045 gagaaattcaccttaaagatgaataagtg-ggtgtccggggttcaaaccccgacccctacacacattgtgcattatcccttgccaaatgagcttagctca 41749947  T
Q  404 tggg 407  Q
    ||||    
T  41749946 tggg 41749943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 350
Target Start/End: Complemental strand, 20435880 - 20435834
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaa 350  Q
    |||||||||||||||||||||||||| || | | |||||||||||||    
T  20435880 gagaaattcaccttaaagatgaataagtgggatgtccgaggttcgaa 20435834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 385
Target Start/End: Original strand, 5901828 - 5901908
Alignment:
Q  305 agaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattattcctta 385  Q
    ||||||||||||| ||||||||||| || ||| |||| |||| | | || || ||||||| | |||||||||||| |||||    
T  5901828 agaaattcacctttaagatgaataagtggggtgtccggggtttgtaccccggcccctgcagaaattgtgcattatccctta 5901908  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 364
Target Start/End: Complemental strand, 20375692 - 20375632
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgca 364  Q
    |||||||||||||||||||||||||| ||  || || |||||||||| || || |||||||    
T  20375692 gagaaattcaccttaaagatgaataagtggcgtgtctgaggttcgaaccccggaccctgca 20375632  T

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Target: scaffold0018 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 407
Target Start/End: Original strand, 121834 - 121898
Alignment:
Q  343 ggttcgaatcctggtccctgcacatattgtgcattattccttatcaaatgaactaagttcatggg 407  Q
    |||||||| || ||||||||||||||||||||||||| || || ||||||| ||||| |||||||    
T  121834 ggttcgaaccccggtccctgcacatattgtgcattatcccctaccaaatgagctaagctcatggg 121898  T

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Target: scaffold0072 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 380
Target Start/End: Original strand, 17729 - 17805
Alignment:
Q  304 gagaaattcaccttaaagatgaataaatgaggtatccgaggttcgaatcctggtccctgcacatattgtgcattatt 380  Q
    ||||||||||||||||| |||||||| |||||| || ||||||||||  |   |||||||| ||||| |||||||||    
T  17729 gagaaattcaccttaaaaatgaataagtgaggtgtctgaggttcgaactccaatccctgcatatattatgcattatt 17805  T

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