View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_low_28 (Length: 441)
Name: NF1056_low_28
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 30 - 434
Target Start/End: Original strand, 1637050 - 1637454
Alignment:
| Q |
30 |
gttggggcttcagcgggagcattggtggcgggcaattttgaaggtgaaggagcagtcgcggactctgaaggagtctcagctgtgggagcatcagctttag |
129 |
Q |
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| T |
1637050 |
gttggggcttcagcgggagcattggtggcgggctctttagaaggtgaaggagcagtcgcggactctgaaggagtctcagctgtgggagcatcagctttag |
1637149 |
T |
|
| Q |
130 |
cagccgaaggagagcttgcattctttgccgcagttggagcgcttgcagtagatactgaatcaactccagggaagatgataggtttggcaacttggagaat |
229 |
Q |
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| T |
1637150 |
cagccgaaggagagcttgcattctttgccgcagttggagcgcttgcagtagatactgaatcaactccagggaagatgataggtttggcaacttggagaat |
1637249 |
T |
|
| Q |
230 |
ggaaatgttgtaaggctgtttgacaacggttttcacaagcgcaacgtcgattggagcaccactcacagcagatccaaagtccatctcaccctcaccaatg |
329 |
Q |
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| T |
1637250 |
ggaaatgttgtaaggctgtttgacaacggttttcacaagggcaacgtcgattggagcaccactcacagcagatccaaagtccatctcaccctcaccaatg |
1637349 |
T |
|
| Q |
330 |
agtttaaccttaaggaacccttgttggttcttggcttggcctgaggcttggaaaagggtggtcaagagtatgccactgcccacagcttcactgagcttca |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1637350 |
agtttaaccttaaggaacccttgttggttcttggcttggcctgaggcttggaaaagggtggtcaagagtatgccactgcccacagcttcactgagcttct |
1637449 |
T |
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| Q |
430 |
tctca |
434 |
Q |
| |
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||||| |
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| T |
1637450 |
tctca |
1637454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 189 - 395
Target Start/End: Original strand, 1612604 - 1612810
Alignment:
| Q |
189 |
tcaactccagggaagatgataggtttggcaacttggagaatggaaatgttgtaaggctgtttgacaacggttttcacaagcgcaacgtcgattggagcac |
288 |
Q |
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|||| ||||||||| | ||||||||| || ||||||| |||| |||||||| ||||| || ||| |||||| ||| ||||||||||||||||| |
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| T |
1612604 |
tcaagtccagggaacaagataggtttcgcgacttggattatggtgatgttgtagggctgggcgaaaacaactttcactagcttaacgtcgattggagcac |
1612703 |
T |
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| Q |
289 |
cactcacagcagatccaaagtccatctcaccctcaccaatgagtttaaccttaaggaacccttgttggttcttggcttggcctgaggcttggaaaagggt |
388 |
Q |
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|||||||||||||||||| | ||| ||||| |||| | || | |||||||||||| |||||||||||| | ||| |||||||| |||| ||||||| |
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| T |
1612704 |
cactcacagcagatccaatggccaaatcaccgtcactagtgcgattaaccttaaggtacccttgttggtccacggcgatgcctgaggattggtaaagggt |
1612803 |
T |
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| Q |
389 |
ggtcaag |
395 |
Q |
| |
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||||||| |
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| T |
1612804 |
ggtcaag |
1612810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 272 - 398
Target Start/End: Original strand, 1629223 - 1629349
Alignment:
| Q |
272 |
aacgtcgattggagcaccactcacagcagatccaaagtccatctcaccctcaccaatgagtttaaccttaaggaacccttgttggttcttggcttggcct |
371 |
Q |
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||||||||||||||||||||||||||||||||||| | ||| ||||| |||| | || | |||||||||||| |||||||||||| | ||| |||| |
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| T |
1629223 |
aacgtcgattggagcaccactcacagcagatccaatggccaaatcaccgtcactagtgcgattaaccttaaggtacccttgttggtccacggcgatgcct |
1629322 |
T |
|
| Q |
372 |
gaggcttggaaaagggtggtcaagagt |
398 |
Q |
| |
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|||| |||| |||||||| |||||||| |
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| T |
1629323 |
gaggattggtaaagggtgatcaagagt |
1629349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 398
Target Start/End: Original strand, 1622155 - 1622281
Alignment:
| Q |
272 |
aacgtcgattggagcaccactcacagcagatccaaagtccatctcaccctcaccaatgagtttaaccttaaggaacccttgttggttcttggcttggcct |
371 |
Q |
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||||||||| ||||||||||||||||||||||||| | ||| ||||| |||| | || | |||||||||||| |||||||||||| | ||| |||| |
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| T |
1622155 |
aacgtcgatgggagcaccactcacagcagatccaatggccaaatcaccgtcactagtgcgattaaccttaaggtacccttgttggtccacggcgatgcct |
1622254 |
T |
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| Q |
372 |
gaggcttggaaaagggtggtcaagagt |
398 |
Q |
| |
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|||| |||| |||||||| |||||||| |
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| T |
1622255 |
gaggattggtaaagggtgatcaagagt |
1622281 |
T |
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