View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1056_low_29 (Length: 440)

Name: NF1056_low_29
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1056_low_29
NF1056_low_29
[»] chr3 (12 HSPs)
chr3 (15-332)||(30055397-30055718)
chr3 (135-330)||(30182898-30183089)
chr3 (212-278)||(30130505-30130571)
chr3 (212-292)||(30133799-30133879)
chr3 (212-292)||(30135195-30135275)
chr3 (212-292)||(30144746-30144826)
chr3 (20-80)||(30048799-30048859)
chr3 (271-323)||(30130104-30130156)
chr3 (18-79)||(30130597-30130662)
chr3 (18-79)||(30133921-30133986)
chr3 (18-79)||(30135317-30135382)
chr3 (18-79)||(30144868-30144933)
[»] chr1 (1 HSPs)
chr1 (328-434)||(29947689-29947795)


Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 15 - 332
Target Start/End: Complemental strand, 30055718 - 30055397
Alignment:
Q  15 tatcaattgtggggtttgttggaataaagcatagctttgttactctgtatgcctatgaaagatcatgaaagttaggattagtttaatttattactccctt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  30055718 tatcaattgtggggtttgttggaataaagcatagctttgttactctgtatgcctatggaagatcatgaaagttaggattagtttaatttattactccctc 30055619  T
Q  115 tgtctcacatccgctgttaattaaggtaaaatacacaatcttaagaaaataatttactctcattcatttcttttgtaaatct----ttttcttttattaa 210  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||| |||||||||    
T  30055618 tgtctcacatctgctgttaattaaggtaaaatacacaatcttaagaaaataatttactctcattcatttcttttgtaaatcttttttttttttttattaa 30055519  T
Q  211 attgtccttattgtaatatgaatttggtgggaggactaattagtgtatgttttctgagaaataaataaatacgaatcttgttgaaaaccgataattaata 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30055518 attgtccttattgtaatatgaatttggtgggaggactaattagtgtatgtttgctgagaaataaataaatacgaatcttgttgaaaaccgataattaata 30055419  T
Q  311 ctatctgaatattaaaaaatga 332  Q
    |||||| |||||||||||||||    
T  30055418 ctatctcaatattaaaaaatga 30055397  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 135 - 330
Target Start/End: Complemental strand, 30183089 - 30182898
Alignment:
Q  135 ttaaggtaaaatacacaatcttaagaaaataatttactctcattcatttcttttgtaaatctttttcttttattaaattgtccttattgtaatatgaatt 234  Q
    ||||| ||||||||||  |||||||||||||||||||||| |||  ||| || ||||||||  ||| ||| | |||||||||||||||||||||||||||    
T  30183089 ttaagataaaatacacg-tcttaagaaaataatttactctaatt--ttttttatgtaaatcaattt-tttgactaaattgtccttattgtaatatgaatt 30182994  T
Q  235 tggtgggaggactaattagtgtatgttttctgagaaataaataaatacgaatcttgttgaaaaccgataattaatactatctgaatattaaaaaat 330  Q
    |||||| |||||||||||||||||| |     ||| ||||| ||||| |||| ||| |||||| |  |||||||||||||||||||||||||||||    
T  30182993 tggtggaaggactaattagtgtatgatggagaagatataaaaaaataagaatattgatgaaaaactgtaattaatactatctgaatattaaaaaat 30182898  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 30130571 - 30130505
Alignment:
Q  212 ttgtccttattgtaatatgaatttggtgggaggactaattagtgtatgttttctgagaaataaataa 278  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||| ||||||||    
T  30130571 ttgtccttattgtaatatgaatttggtggaaggactaattagtgtatatttgctgagatataaataa 30130505  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 212 - 292
Target Start/End: Complemental strand, 30133879 - 30133799
Alignment:
Q  212 ttgtccttattgtaatatgaatttggtgggaggactaattagtgtatgttttctgagaaataaataaatacgaatcttgtt 292  Q
    ||||||||| ||||||||||||||| ||| ||||| |||||||||||||||  ||||| |||||||||||||||| |||||    
T  30133879 ttgtccttaatgtaatatgaatttgatggaaggacaaattagtgtatgtttgttgagatataaataaatacgaatattgtt 30133799  T

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Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 212 - 292
Target Start/End: Complemental strand, 30135275 - 30135195
Alignment:
Q  212 ttgtccttattgtaatatgaatttggtgggaggactaattagtgtatgttttctgagaaataaataaatacgaatcttgtt 292  Q
    ||||||||| ||||||||||||||| ||| ||||| |||||||||||||||  ||||| |||||||||||||||| |||||    
T  30135275 ttgtccttaatgtaatatgaatttgatggaaggacaaattagtgtatgtttgttgagatataaataaatacgaatattgtt 30135195  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 212 - 292
Target Start/End: Complemental strand, 30144826 - 30144746
Alignment:
Q  212 ttgtccttattgtaatatgaatttggtgggaggactaattagtgtatgttttctgagaaataaataaatacgaatcttgtt 292  Q
    ||||||||| ||||||||||||||| ||| ||||| |||||||||||||||  ||||| |||||||||||||||| |||||    
T  30144826 ttgtccttaatgtaatatgaatttgatggaaggacaaattagtgtatgtttgttgagatataaataaatacgaatattgtt 30144746  T

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Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 30048859 - 30048799
Alignment:
Q  20 attgtggggtttgttggaataaagcatagctttgttactctgtatgcctatgaaagatcat 80  Q
    |||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||    
T  30048859 attgtggggtttgttgaaataaagcatagctttgttactttctatgcctatgaaagttcat 30048799  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 271 - 323
Target Start/End: Complemental strand, 30130156 - 30130104
Alignment:
Q  271 ataaataaatacgaatcttgttgaaaaccgataattaatactatctgaatatt 323  Q
    |||||||||||||||| |||||||||||  |||||||||||||||||||||||    
T  30130156 ataaataaatacgaatattgttgaaaacttataattaatactatctgaatatt 30130104  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 30130662 - 30130597
Alignment:
Q  18 caattgtggggtttgttggaataa----agcatagctttgttactctgtatgcctatgaaagatca 79  Q
    |||||||||||||||||| |||||    ||||||||||||||||||| |||||||||| |||||||    
T  30130662 caattgtggggtttgttgtaataattaaagcatagctttgttactctctatgcctatggaagatca 30130597  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 30133986 - 30133921
Alignment:
Q  18 caattgtggggtttgttggaataa----agcatagctttgttactctgtatgcctatgaaagatca 79  Q
    |||||||||||||||||| |||||    ||||||||||||||||  | |||||||||| |||||||    
T  30133986 caattgtggggtttgttgtaataattaaagcatagctttgttacgttctatgcctatggaagatca 30133921  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 30135382 - 30135317
Alignment:
Q  18 caattgtggggtttgttggaataa----agcatagctttgttactctgtatgcctatgaaagatca 79  Q
    |||||||||||||||||| |||||    ||||||||||||||||  | |||||||||| |||||||    
T  30135382 caattgtggggtttgttgtaataattaaagcatagctttgttacgttctatgcctatggaagatca 30135317  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 30144933 - 30144868
Alignment:
Q  18 caattgtggggtttgttggaataa----agcatagctttgttactctgtatgcctatgaaagatca 79  Q
    |||||||||||||||||| |||||    ||||||||||||||||  | |||||||||| |||||||    
T  30144933 caattgtggggtttgttgtaataattaaagcatagctttgttacgttctatgcctatggaagatca 30144868  T

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Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 328 - 434
Target Start/End: Complemental strand, 29947795 - 29947689
Alignment:
Q  328 aatgacaacgatgacatggattgctacagccggaaggaatcttctgatcaagagtctgattttagaggcgacctttctgatagcagttggcggtgtgatg 427  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29947795 aatgacaacgatggcatggatcgctacagccggaaggaatcttctgatcaagagtctgattttagaggcgacctttctgatagcagttggcggtgtgatg 29947696  T
Q  428 agcctga 434  Q
    |||||||    
T  29947695 agcctga 29947689  T

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