View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1056_low_31 (Length: 439)

Name: NF1056_low_31
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1056_low_31
NF1056_low_31
[»] chr3 (26 HSPs)
chr3 (118-367)||(26631471-26631710)
chr3 (236-372)||(27350999-27351135)
chr3 (121-392)||(28085788-28086053)
chr3 (242-392)||(19482065-19482215)
chr3 (118-381)||(27387644-27387901)
chr3 (267-372)||(27381058-27381162)
chr3 (118-385)||(19478173-19478448)
chr3 (244-366)||(28006831-28006956)
chr3 (280-347)||(2978511-2978579)
chr3 (119-202)||(26632306-26632387)
chr3 (280-350)||(2168925-2168996)
chr3 (280-350)||(3110782-3110853)
chr3 (280-350)||(13990646-13990717)
chr3 (280-350)||(23344190-23344261)
chr3 (118-204)||(27380762-27380846)
chr3 (281-350)||(40800912-40800982)
chr3 (327-383)||(27981373-27981429)
chr3 (280-350)||(9724898-9724969)
chr3 (280-350)||(49487001-49487072)
chr3 (281-350)||(13980930-13981000)
chr3 (283-346)||(12990745-12990809)
chr3 (280-350)||(21883235-21883306)
chr3 (281-350)||(15752772-15752842)
chr3 (281-346)||(17032937-17033003)
chr3 (280-325)||(21477323-21477369)
chr3 (281-356)||(10937113-10937189)
[»] scaffold1163 (1 HSPs)
scaffold1163 (118-415)||(1138-1426)
[»] chr2 (13 HSPs)
chr2 (118-382)||(22395734-22395990)
chr2 (280-350)||(636096-636167)
chr2 (280-350)||(22430162-22430233)
chr2 (280-350)||(22435756-22435827)
chr2 (283-350)||(14898600-14898668)
chr2 (280-350)||(7910237-7910308)
chr2 (280-350)||(19437813-19437884)
chr2 (281-351)||(25231798-25231869)
chr2 (280-350)||(43776806-43776877)
chr2 (305-350)||(7385129-7385174)
chr2 (290-350)||(16443605-16443666)
chr2 (280-350)||(43287666-43287737)
chr2 (302-350)||(11311886-11311933)
[»] scaffold0043 (6 HSPs)
scaffold0043 (267-372)||(50551-50656)
scaffold0043 (280-412)||(46253-46385)
scaffold0043 (118-209)||(29434-29523)
scaffold0043 (121-195)||(31244-31316)
scaffold0043 (121-199)||(50734-50810)
scaffold0043 (121-196)||(46103-46176)
[»] scaffold1805 (2 HSPs)
scaffold1805 (274-392)||(186-310)
scaffold1805 (118-204)||(34-118)
[»] chr5 (10 HSPs)
chr5 (280-350)||(19780289-19780360)
chr5 (281-347)||(25365670-25365737)
chr5 (281-347)||(25365943-25366010)
chr5 (280-350)||(28367255-28367326)
chr5 (283-350)||(30957871-30957939)
chr5 (280-350)||(16673320-16673391)
chr5 (280-350)||(17945562-17945633)
chr5 (280-350)||(18080228-18080299)
chr5 (280-350)||(23053655-23053726)
chr5 (280-350)||(35264817-35264888)
[»] chr7 (15 HSPs)
chr7 (280-347)||(29185340-29185408)
chr7 (280-350)||(16648237-16648308)
chr7 (280-350)||(17622598-17622669)
chr7 (280-350)||(25498869-25498940)
chr7 (280-350)||(32148291-32148362)
chr7 (280-350)||(42162529-42162600)
chr7 (280-350)||(340570-340641)
chr7 (281-355)||(20362471-20362546)
chr7 (280-340)||(558156-558217)
chr7 (280-348)||(25830662-25830731)
chr7 (301-350)||(42208729-42208778)
chr7 (279-347)||(32898967-32899035)
chr7 (280-350)||(8247921-8247992)
chr7 (281-359)||(26457113-26457191)
chr7 (281-350)||(20125082-20125152)
[»] scaffold0004 (1 HSPs)
scaffold0004 (280-350)||(345945-346016)
[»] chr4 (17 HSPs)
chr4 (280-350)||(6162063-6162134)
chr4 (280-350)||(12746846-12746917)
chr4 (280-350)||(53981909-53981980)
chr4 (281-350)||(2924188-2924258)
chr4 (280-347)||(911122-911190)
chr4 (280-347)||(12435622-12435690)
chr4 (280-347)||(29333455-29333523)
chr4 (280-347)||(42410922-42410990)
chr4 (280-350)||(1874269-1874340)
chr4 (284-350)||(20192866-20192933)
chr4 (281-347)||(22748700-22748767)
chr4 (281-350)||(23200338-23200408)
chr4 (281-355)||(6407756-6407832)
chr4 (280-350)||(12659463-12659534)
chr4 (280-350)||(13999810-13999881)
chr4 (280-350)||(16325991-16326062)
chr4 (280-347)||(30673979-30674047)
[»] chr1 (13 HSPs)
chr1 (280-350)||(15716438-15716509)
chr1 (281-347)||(15552679-15552746)
chr1 (280-350)||(31093224-31093295)
chr1 (280-350)||(37357006-37357077)
chr1 (280-350)||(40274708-40274779)
chr1 (281-350)||(29547555-29547625)
chr1 (302-350)||(27179244-27179292)
chr1 (280-347)||(38990915-38990983)
chr1 (280-350)||(11659989-11660060)
chr1 (280-350)||(18535256-18535327)
chr1 (280-350)||(33493211-33493281)
chr1 (283-350)||(145664-145732)
chr1 (302-350)||(17721554-17721602)
[»] chr8 (9 HSPs)
chr8 (280-347)||(21247491-21247559)
chr8 (280-347)||(27679900-27679968)
chr8 (281-350)||(30714493-30714563)
chr8 (281-350)||(30722270-30722340)
chr8 (280-347)||(37209525-37209594)
chr8 (283-350)||(10738785-10738852)
chr8 (283-350)||(23429349-23429417)
chr8 (281-347)||(8509597-8509664)
chr8 (302-350)||(41048696-41048744)
[»] chr6 (4 HSPs)
chr6 (280-347)||(23427297-23427365)
chr6 (283-350)||(25397733-25397801)
chr6 (280-323)||(19816868-19816912)
chr6 (280-348)||(21847756-21847824)
[»] scaffold0102 (1 HSPs)
scaffold0102 (280-350)||(13837-13907)
[»] scaffold0014 (1 HSPs)
scaffold0014 (280-350)||(111686-111757)
[»] scaffold0066 (1 HSPs)
scaffold0066 (281-350)||(11409-11479)
[»] scaffold0054 (1 HSPs)
scaffold0054 (280-340)||(67681-67741)
[»] scaffold0010 (1 HSPs)
scaffold0010 (285-348)||(159676-159740)
[»] scaffold0062 (2 HSPs)
scaffold0062 (302-350)||(19691-19739)
scaffold0062 (302-350)||(29859-29907)


Alignment Details
Target: chr3 (Bit Score: 158; Significance: 6e-84; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 118 - 367
Target Start/End: Original strand, 26631471 - 26631710
Alignment:
Q  118 aagagaagctgaacttgcgaggaatttcgcaacagctagggctttgtaaatttaaaatcatcctttcctacattttaggaaggaacctcacaaaaataca 217  Q
    |||||||||||||||||||||||||||||||||||  | ||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||           
T  26631471 aagagaagctgaacttgcgaggaatttcgcaacag--aaggctttgcaaatttaaaatcatcctttcctacattttaggagggagcctcacaa------- 26631561  T
Q  218 aaaataggatagggtgtgattagtgtttttgttaatgtcgtcttgtttatgtatgcttagtactgcactcttttttccttcacctggttttatcccattg 317  Q
     |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||    
T  26631562 -aaataggatagggtgtgattagtgtttttgttaatgtcgttttgtttatgtaagcttagtactgcgctcttttttccttcatctggttttatcccattg 26631660  T
Q  318 gattttacgggtaaggtttttaatgaggcagatctatcacattgttattc 367  Q
    | ||||||  |||||||||||||||| |||||| ||||||||||||||||    
T  26631661 ggttttacaagtaaggtttttaatgatgcagatgtatcacattgttattc 26631710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 236 - 372
Target Start/End: Original strand, 27350999 - 27351135
Alignment:
Q  236 attagtgtttttgttaatgtcgtcttgtttatgtatgcttagtactgcactcttttttccttcacctggttttatcccattggattttacgggtaaggtt 335  Q
    |||| ||||||| |||||| ||| || ||| |||| || |||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  27350999 attattgtttttcttaatgccgtgttttttttgtacgcctagtgctgcactcttttttccttcacctggttttatcccattgggttttacaggtaaggtt 27351098  T
Q  336 tttaatgaggcagatctatcacattgttattcccttg 372  Q
    ||||||||||||| | ||||||| |||||||||||||    
T  27351099 tttaatgaggcagttgtatcacactgttattcccttg 27351135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 121 - 392
Target Start/End: Original strand, 28085788 - 28086053
Alignment:
Q  121 agaagctgaacttgcgaggaatttcgcaacagctagggctttgtaaatttaaaatcatcctttcctacattttaggaaggaacctcacaaaaatacaaaa 220  Q
    ||||||||||| || || ||| || |||||||  | |||||||||||||||||||| |||||||||||||||||||||| |||       ||| ||||||    
T  28085788 agaagctgaacgtgtgatgaagttggcaacag--aaggctttgtaaatttaaaatcttcctttcctacattttaggaagaaac-------aaacacaaaa 28085878  T
Q  221 ataggatagggtgt---gattagtgtttttgttaatgtcgtcttgtttatgtatgcttagtactgcactcttttttccttcacctggttttatcccattg 317  Q
     |||| ||||   |   |||||  |||||||||||||||   ||||||||||||||||||| |||| |||||||| ||||||||| |||||||||  ||     
T  28085879 ttaggctaggtcatcatgattatcgtttttgttaatgtcactttgtttatgtatgcttagtgctgcgctctttttcccttcacctagttttatcctttta 28085978  T
Q  318 gattttacgggtaaggtttttaatgaggcagatctatcacattgttattcccttgagtattgattggactagtcc 392  Q
    | |||||| |||||||||||||||||||||| | ||||  ||||||||||| ||| |||||||| || |||||||    
T  28085979 ggttttacaggtaaggtttttaatgaggcagttgtatcctattgttattccgttgtgtattgataggcctagtcc 28086053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 242 - 392
Target Start/End: Complemental strand, 19482215 - 19482065
Alignment:
Q  242 gtttttgttaatgtcgtcttgtttatgtatgcttagtactgcactcttttttccttcacctggttttatcccattggattttacgggtaaggtttttaat 341  Q
    |||||||||||| || | |||||| |||||| ||| || |||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||    
T  19482215 gtttttgttaatctcattttgtttctgtatgtttactattgcactcttttttccttcacctggttttatcccattgggttttacaggcaaggtttttaat 19482116  T
Q  342 gaggcagatctatcacattgttattcccttgagtattgattggactagtcc 392  Q
    ||||||| | |   ||||| ||||||||||| ||||||||||| |||||||    
T  19482115 gaggcagttgtccgacattattattcccttgtgtattgattggcctagtcc 19482065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 118 - 381
Target Start/End: Complemental strand, 27387901 - 27387644
Alignment:
Q  118 aagagaagctgaacttgcgaggaatttcgcaacagctagggctttgtaaatttaaaatcatcctttcctacattttaggaaggaacctcacaaaaataca 217  Q
    |||||||||||||| ||| |||||||| |||||||  | ||||||   |||||||| || || |||||||||| ||||||||||||| ||||  ||        
T  27387901 aagagaagctgaacgtgctaggaatttggcaacag--aaggcttttctaatttaaagtcttcatttcctacatattaggaaggaaccccacatgaa---- 27387808  T
Q  218 aaaataggatagggtgtgattagtgtttttgttaatgtcgtcttgtttatgtatgc--ttagtactgcactcttttttccttcacctggttttatcccat 315  Q
      |||||| ||||||  |||||  || |||||||||||| | |||||||||||||   |||||| ||| ||||||||||||||| |||||||||||||||    
T  27387807 --aataggttagggtacgattatggtgtttgttaatgtcattttgtttatgtatgtgtttagtaatgcgctcttttttccttcatctggttttatcccat 27387710  T
Q  316 tggattttacgggtaaggtttttaatgaggcagatctatcacattgttattcccttgagtattgat 381  Q
    ||| |||||| |||||||||||||||||||||  | ||| ||| | ||||||||||| | ||||||    
T  27387709 tgggttttacaggtaaggtttttaatgaggcaactgtattacaatattattcccttgtgcattgat 27387644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 267 - 372
Target Start/End: Original strand, 27381058 - 27381162
Alignment:
Q  267 tgtatgcttagtactgcactcttttttccttcacctggttttatcccattggattttacgggtaaggtttttaatgaggcagatctatcacattgttatt 366  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||| | ||| ||| |||||||    
T  27381058 tgtacgcttagtgctgcactcttttttccttcacctggttttatcccattgggttttac-agtaaggtttttaatgaggcagttgtatgacactgttatt 27381156  T
Q  367 cccttg 372  Q
    ||||||    
T  27381157 cccttg 27381162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 118 - 385
Target Start/End: Original strand, 19478173 - 19478448
Alignment:
Q  118 aagagaagctgaacttgcgaggaatttcgcaacagctagggctttgtaaatttaaaatcatcctttcctacattttaggaaggaacctcacaaaa----- 212  Q
    |||||||||||||| |||||||||| | |||||||  | ||||||| | |||| || || || ||||||||||||||||||||||||  | | |          
T  19478173 aagagaagctgaacgtgcgaggaatctggcaacag--aaggctttgcagatttgaagtcttcatttcctacattttaggaaggaaccagatatatgcccc 19478270  T
Q  213 -atacaaaaataggatagggtgt---gattagtgtttttgttaatgtcgtcttgtttatgtatgcttagtactgcactctttt--ttccttcacctggtt 306  Q
     | ||||||||||  |||| |||   |||||  ||||||||||||||  | |||||| |||||||||||| |||| || ||||  |||||||||||||||    
T  19478271 cacacaaaaatagactaggttgtcttgattatcgtttttgttaatgtatt-ttgtttctgtatgcttagtgctgcgcttttttttttccttcacctggtt 19478369  T
Q  307 ttatcccattggattttacgggtaaggtttttaatgaggcagatctatcacattgttattcccttgagtattgattgga 385  Q
    |||||| ||||| |||||| |||||||||||||||||||||  | ||||||| |||| ||| |||| ||||||||||||    
T  19478370 ttatcctattgggttttacaggtaaggtttttaatgaggcaattgtatcacactgttgttcacttgggtattgattgga 19478448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 244 - 366
Target Start/End: Original strand, 28006831 - 28006956
Alignment:
Q  244 ttttgttaatgtcgtcttgtttatg---tatgcttagtactgcactcttttttccttcacctggttttatcccattggattttacgggtaaggtttttaa 340  Q
    |||| |||||||||| ||||||||    || ||||||| ||||||||||||||||||| ||||||||||||| | ||| |||||  ||||||||||||||    
T  28006831 tttttttaatgtcgttttgtttataacatacgcttagtgctgcactcttttttccttcccctggttttatcctactgggttttataggtaaggtttttaa 28006930  T
Q  341 tgaggcagatctatcacattgttatt 366  Q
    |||||||| | |||| || |||||||    
T  28006931 tgaggcagttgtatcccaatgttatt 28006956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 2978579 - 2978511
Alignment:
Q  280 ctgcactcttttttccttcacct-ggttttatcccattggattttacgggtaaggtttttaatgaggca 347  Q
    ||||||||||||||||||||||  |||||||||||||||| |||| | |||||||||||||| ||||||    
T  2978579 ctgcactcttttttccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca 2978511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 119 - 202
Target Start/End: Original strand, 26632306 - 26632387
Alignment:
Q  119 agagaagctgaacttgcgaggaatttcgcaacagctagggctttgtaaatttaaaatcatcctttcctacattttaggaaggaa 202  Q
    ||||||||||| | |||||||||||| |||| ||  | ||||||  ||||||||||||||| ||||||||||||||||||||||    
T  26632306 agagaagctgagcgtgcgaggaatttggcaaaag--aaggctttacaaatttaaaatcatcatttcctacattttaggaaggaa 26632387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 2168996 - 2168925
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  2168996 ctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 2168925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 3110853 - 3110782
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  3110853 ctgcactctttttcccttaaccatggttttatcccattgggtttttctggtaaggtttttaacgaggcagat 3110782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 350
Target Start/End: Original strand, 13990646 - 13990717
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  13990646 ctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 13990717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 350
Target Start/End: Original strand, 23344190 - 23344261
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  23344190 ctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 23344261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 27380762 - 27380846
Alignment:
Q  118 aagagaagctgaacttgcgaggaatttcgcaacagctagggctttgtaaatttaaaatcatcctttcctacattttaggaaggaacc 204  Q
    |||||||||||||| || ||||||| | |||||||  | ||||||| ||||||||| || || ||||||||||||||||||||||||    
T  27380762 aagagaagctgaacgtgtgaggaatctggcaacag--aaggctttgcaaatttaaagtcttcatttcctacattttaggaaggaacc 27380846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 281 - 350
Target Start/End: Complemental strand, 40800982 - 40800912
Alignment:
Q  281 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    |||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  40800982 tgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 40800912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 327 - 383
Target Start/End: Original strand, 27981373 - 27981429
Alignment:
Q  327 ggtaaggtttttaatgaggcagatctatcacattgttattcccttgagtattgattg 383  Q
    |||||||||||||||||||||| | ||| ||| ||||||||||||| ||||||||||    
T  27981373 ggtaaggtttttaatgaggcagttgtatgacactgttattcccttgtgtattgattg 27981429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 9724969 - 9724898
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||||||||||| | |||| | |||||||||||||| |||||||||    
T  9724969 ctgcactctttttcccttaaccatggttttatcccatttggttttcctggtaaggtttttaacgaggcagat 9724898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 49487072 - 49487001
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||| ||||||||| |||| | |||||||||||||| |||||||||    
T  49487072 ctgcactctttttcccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagat 49487001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 350
Target Start/End: Complemental strand, 13981000 - 13980930
Alignment:
Q  281 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    |||||||||||| |||| ||| ||||||| ||||||||| |||| | |||||||||||||| |||||||||    
T  13981000 tgcactctttttcccttaaccatggttttttcccattgggtttttctggtaaggtttttaacgaggcagat 13980930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 346
Target Start/End: Original strand, 12990745 - 12990809
Alignment:
Q  283 cactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggc 346  Q
    ||||||||||||||| | | ||||||||||||| | |||||| | ||||||||||||||||||||    
T  12990745 cactcttttttccttaagcatggttttatcccactagatttttctggtaaggtttttaatgaggc 12990809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 350
Target Start/End: Original strand, 21883235 - 21883306
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||| ||||||||| ||||   |||||||||||||| |||||||||    
T  21883235 ctgcactctttttcccttaaccatggttttgtcccattgggttttcttggtaaggtttttaacgaggcagat 21883306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 350
Target Start/End: Complemental strand, 15752842 - 15752772
Alignment:
Q  281 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    |||||||||||| |||| | | ||||||| ||||||||| |||| | |||||||||||||| |||||||||    
T  15752842 tgcactctttttcccttaatcatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagat 15752772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 346
Target Start/End: Original strand, 17032937 - 17033003
Alignment:
Q  281 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggc 346  Q
    ||||||||||||||||| ||| ||||||||||||||| | ||||   |||||||||||||| |||||    
T  17032937 tgcactcttttttccttaaccatggttttatcccattaggttttcttggtaaggtttttaacgaggc 17033003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 325
Target Start/End: Original strand, 21477323 - 21477369
Alignment:
Q  280 ctgcactcttttttccttcacct-ggttttatcccattggattttac 325  Q
    ||||||||||||| ||||||||| |||||||||||||||| ||||||    
T  21477323 ctgcactctttttcccttcacctaggttttatcccattgggttttac 21477369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 356
Target Start/End: Original strand, 10937113 - 10937189
Alignment:
Q  281 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagatctatca 356  Q
    ||||||||| || |||||||| ||||||| ||||| ||| ||||   |||||||||||||||||| ||||| |||||    
T  10937113 tgcactcttcttcccttcaccatggttttgtcccaatgggtttttatggtaaggtttttaatgagacagatatatca 10937189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1163 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 118 - 415
Target Start/End: Original strand, 1138 - 1426
Alignment:
Q  118 aagagaagctgaacttgcgaggaatttcgcaacagctagggctttgtaaatttaaaatcatcctttcctacattttaggaaggaacctcacaaaaataca 217  Q
    |||||||||||| | |||||||||||| |||||||  | ||||||   |||||||| || || |||||||||||||||||||||||| ||||      |     
T  1138 aagagaagctgagcgtgcgaggaatttggcaacag--aaggcttttctaatttaaagtcttcgtttcctacattttaggaaggaaccccaca------cg 1229  T
Q  218 aaaataggatagggtgtgattagtgtttttgttaatgtcgtcttgtttatgtatgcttagtactgcactcttttttccttcacctggttttatcccattg 317  Q
    |||||||| |||||| ||||||  || ||||||||||| || ||||||||||||| |||||||||| ||||||||||||||||||| |||| ||||||||    
T  1230 aaaataggttagggtttgattatggtgtttgttaatgttgttttgtttatgtatgtttagtactgcgctcttttttccttcacctgcttttgtcccattg 1329  T
Q  318 gattttacgggtaaggtttttaatgaggcagatctatcacattgttattcccttgagtattgattggactagtcctccaagttgtatattctttttat 415  Q
    | |||||| |||||||||||||||||||||  | ||| ||| | ||||||||||| | |||||||   ||||||| | |||||| || ||||||||||    
T  1330 ggttttacaggtaaggtttttaatgaggcaactgtattacaatattattcccttgtgaattgattttcctagtcc-caaagttgcatcttctttttat 1426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 118 - 382
Target Start/End: Original strand, 22395734 - 22395990
Alignment:
Q  118 aagagaagctgaacttgcgaggaatttcgcaacagctagggctttgtaaatttaaaatcatcctttcctacattttaggaaggaacctcacaaaaataca 217  Q
    |||||||||||||| |||||||||||| ||| |||  | ||||||   |||||||| || || |||||||||||||||||||||| | ||||      |     
T  22395734 aagagaagctgaacgtgcgaggaatttggcagcag--aaggcttttctaatttaaagtcttcgtttcctacattttaggaaggaagcacaca------cg 22395825  T
Q  218 aaaataggatagggtgtgattagtgtttttgttaatgtcgtcttgtttatgtatgcttagtactgcactcttttttccttcacctggttttatcccattg 317  Q
    ||||| || |||||||||||||  || |||| |||||| || ||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||    
T  22395826 aaaattggttagggtgtgattatggtgtttgctaatgttgttttgtttatgtatgtttagtactgcgctcttttttccttcacctggttttgtcccattg 22395925  T
Q  318 gattttacgggtaaggtttttaatgaggcagatctatcacattgttattcccttgagtattgatt 382  Q
    | |||||| ||| ||||||||||||||| |  | ||| ||| | ||||||||||| | |||||||    
T  22395926 ggttttacaggttaggtttttaatgagggaactgtattacaatattattcccttgtgaattgatt 22395990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 350
Target Start/End: Original strand, 636096 - 636167
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  636096 ctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 636167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 350
Target Start/End: Original strand, 22430162 - 22430233
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  22430162 ctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 22430233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 350
Target Start/End: Original strand, 22435756 - 22435827
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  22435756 ctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 22435827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 350
Target Start/End: Original strand, 14898600 - 14898668
Alignment:
Q  283 cactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    |||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  14898600 cactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 14898668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 7910308 - 7910237
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||| ||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  7910308 ctgcactatttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 7910237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 19437884 - 19437813
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||| ||||||||| |||| | |||||||||||||| |||||||||    
T  19437884 ctgcactctttttgccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagat 19437813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 281 - 351
Target Start/End: Original strand, 25231798 - 25231869
Alignment:
Q  281 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagatc 351  Q
    |||||||||||| |||| ||| ||||||||||||| | |||||| | ||||||||||||||||||| |||||    
T  25231798 tgcactctttttcccttaaccatggttttatcccactagattttcctggtaaggtttttaatgaggaagatc 25231869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 350
Target Start/End: Original strand, 43776806 - 43776877
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | ||||| |||||||| |||||||||    
T  43776806 ctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaagtttttaacgaggcagat 43776877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 7385174 - 7385129
Alignment:
Q  305 ttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    |||||||||| |||||||| | ||||||||||||||||||||||||    
T  7385174 ttttatcccactggattttcctggtaaggtttttaatgaggcagat 7385129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 290 - 350
Target Start/End: Complemental strand, 16443666 - 16443605
Alignment:
Q  290 ttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    |||||||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  16443666 ttttccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 16443605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 43287737 - 43287666
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||| ||||||||  |||| | |||||||||||||| |||||||||    
T  43287737 ctgcactctttttcccttaaccatggttttgtcccattgagttttcctggtaaggtttttaacgaggcagat 43287666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 350
Target Start/End: Original strand, 11311886 - 11311933
Alignment:
Q  302 tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| ||| |||| | ||||||||||||||||||||||||    
T  11311886 tggttttatcccactgg-ttttcctggtaaggtttttaatgaggcagat 11311933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 74; Significance: 9e-34; HSPs: 6)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 267 - 372
Target Start/End: Complemental strand, 50656 - 50551
Alignment:
Q  267 tgtatgcttagtactgcactcttttttccttcacctggttttatcccattggattttacgggtaaggtttttaatgaggcagatctatcacattgttatt 366  Q
    |||| ||||||| |||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||| | ||||||| |||||||    
T  50656 tgtacgcttagtgctgcactcttttttccttcacctggttttaacccattgggttttacaggtaaggtttttaatgaggcagttatatcacactgttatt 50557  T
Q  367 cccttg 372  Q
    ||||||    
T  50556 cccttg 50551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 280 - 412
Target Start/End: Original strand, 46253 - 46385
Alignment:
Q  280 ctgcactcttttttccttcacctggttttatcccattggattttacgggtaaggtttttaatgaggcagatctatcacattgttattcccttgagtattg 379  Q
    |||||||||||||||||| ||||||||||||| |||||||||| || |||||||||||||||||||||| | ||  |||||||||||||||||  |||||    
T  46253 ctgcactcttttttcctttacctggttttatctcattggatttcacaggtaaggtttttaatgaggcagctgtacaacattgttattcccttgtatattg 46352  T
Q  380 attggactagtcctccaagttgtatattctttt 412  Q
    | |||  |||||| |||  |||||| |||||||    
T  46353 aatggcatagtcccccattttgtatcttctttt 46385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 29434 - 29523
Alignment:
Q  118 aagagaagctgaacttgcgaggaatttcgcaacagctagggctttgtaaatttaaaatcatcctttcctacattttaggaaggaacctcaca 209  Q
    |||| |||||||||||||||||||||| |||||||  | ||||||   |||||||| || || |||||||||||||||||||||||| ||||    
T  29434 aagaaaagctgaacttgcgaggaatttggcaacag--aaggcttttctaatttaaagtcttcgtttcctacattttaggaaggaaccccaca 29523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 195
Target Start/End: Original strand, 31244 - 31316
Alignment:
Q  121 agaagctgaacttgcgaggaatttcgcaacagctagggctttgtaaatttaaaatcatcctttcctacattttag 195  Q
    ||||||||||| |||||||| ||| |||| ||  | ||||||| |||||||||||| || |||||||||||||||    
T  31244 agaagctgaacgtgcgaggactttggcaaaag--aaggctttgcaaatttaaaatcttcgtttcctacattttag 31316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 199
Target Start/End: Complemental strand, 50810 - 50734
Alignment:
Q  121 agaagctgaacttgcgaggaatttcgcaacagctagggctttgtaaatttaaaatcatcctttcctacattttaggaag 199  Q
    ||||||||||| |  ||||||||| |||||||  | |||||||  ||||||||||| |||||||||||| |||||||||    
T  50810 agaagctgaacgtatgaggaatttggcaacag--aaggctttgctaatttaaaatcttcctttcctacaatttaggaag 50734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 46103 - 46176
Alignment:
Q  121 agaagctgaacttgcgaggaatttcgcaacagctagggctttgtaaatttaaaatcatcctttcctacattttagg 196  Q
    ||||||||||| ||| |||| ||| |||| ||  | ||||||| |||||||||||| || ||||||||||||||||    
T  46103 agaagctgaacgtgcaaggactttggcaaaag--aaggctttgcaaatttaaaatcttcgtttcctacattttagg 46176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1805 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold1805
Description:

Target: scaffold1805; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 274 - 392
Target Start/End: Original strand, 186 - 310
Alignment:
Q  274 ttagtactgcactcttttttccttcacctggttttatcccattggattttacgggtaaggtttttaatgaggcag------atctatcacattgttattc 367  Q
    ||||| |||||||||||||||||||||||||||| || |||||| ||||||| ||||||||||||||||||||||       | ||||||| | ||||||    
T  186 ttagtgctgcactcttttttccttcacctggtttcattccattgaattttacaggtaaggtttttaatgaggcagttgtacttgtatcacactattattc 285  T
Q  368 ccttgagtattgattggactagtcc 392  Q
     |||| |||||||||||||||||||    
T  286 acttgggtattgattggactagtcc 310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1805; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 34 - 118
Alignment:
Q  118 aagagaagctgaacttgcgaggaatttcgcaacagctagggctttgtaaatttaaaatcatcctttcctacattttaggaaggaacc 204  Q
    |||||||||||||| || ||||||| | |||||||  | ||||||| ||||||||| || || | ||||||||||||||||| ||||    
T  34 aagagaagctgaacgtgtgaggaatctggcaacag--aaggctttgcaaatttaaagtcttcatatcctacattttaggaagaaacc 118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 19780360 - 19780289
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| |||||||||||||||||||||| | |||||||||||||| |||||||||    
T  19780360 ctgcactctttttcccttaaccatggttttatcccattggatttttctggtaaggtttttaacgaggcagat 19780289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 281 - 347
Target Start/End: Complemental strand, 25365737 - 25365670
Alignment:
Q  281 tgcactcttttttccttcacct-ggttttatcccattggattttacgggtaaggtttttaatgaggca 347  Q
    |||||||||||||||||||||  |||||||||||||||| |||| | |||||||||||||||||||||    
T  25365737 tgcactcttttttccttcaccaaggttttatcccattgggttttcctggtaaggtttttaatgaggca 25365670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 281 - 347
Target Start/End: Complemental strand, 25366010 - 25365943
Alignment:
Q  281 tgcactcttttttccttcacct-ggttttatcccattggattttacgggtaaggtttttaatgaggca 347  Q
    |||||||||||||||||||||  |||||||||||||||| |||| | |||||||||||||||||||||    
T  25366010 tgcactcttttttccttcaccaaggttttatcccattgggttttcctggtaaggtttttaatgaggca 25365943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 28367326 - 28367255
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  28367326 ctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 28367255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 350
Target Start/End: Complemental strand, 30957939 - 30957871
Alignment:
Q  283 cactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    |||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  30957939 cactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 30957871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 350
Target Start/End: Original strand, 16673320 - 16673391
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||| ||||||||| |||| | |||||||||||||| |||||||||    
T  16673320 ctgcactctttttcccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagat 16673391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 350
Target Start/End: Original strand, 17945562 - 17945633
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    |||||||||||||||||| ||| ||||||||||||||||| |||| |  ||||||||||||| ||| |||||    
T  17945562 ctgcactcttttttccttaaccgtggttttatcccattgggtttttcttgtaaggtttttaacgagacagat 17945633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 18080299 - 18080228
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||||||||| ||| |||| | ||||| ||||||||||||||||||    
T  18080299 ctgcactctttttcccttaaccatggttttatcccactgggttttcctggtaaagtttttaatgaggcagat 18080228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 23053726 - 23053655
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||| ||||||||| |||| | |||||||||||||| |||||||||    
T  23053726 ctgcactctttttgccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagat 23053655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 35264888 - 35264817
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||| ||||||||| |||| | |||||||||||||| |||||||||    
T  35264888 ctgcactctttttcccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagat 35264817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 29185340 - 29185408
Alignment:
Q  280 ctgcactcttttttccttcacct-ggttttatcccattggattttacgggtaaggtttttaatgaggca 347  Q
    ||||||||||||||||||||||  |||||||||||||||| |||| | |||||||||||||| ||||||    
T  29185340 ctgcactcttttttccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca 29185408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 350
Target Start/End: Original strand, 16648237 - 16648308
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  16648237 ctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 16648308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 350
Target Start/End: Original strand, 17622598 - 17622669
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  17622598 ctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 17622669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 350
Target Start/End: Original strand, 25498869 - 25498940
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  25498869 ctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 25498940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 350
Target Start/End: Original strand, 32148291 - 32148362
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  32148291 ctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 32148362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 42162600 - 42162529
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  42162600 ctgcactctttttcccttaaccatggttttatcccattgggtttttctggtaaggtttttaacgaggcagat 42162529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 340641 - 340570
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||| ||||||||| |||| | |||||||||||||| |||||||||    
T  340641 ctgcactctttttcccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagat 340570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 281 - 355
Target Start/End: Original strand, 20362471 - 20362546
Alignment:
Q  281 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagatctatc 355  Q
    ||||||||||||||| ||||| ||||||| ||||  |||||||| | ||||||||||||||||| |||||| ||||    
T  20362471 tgcactcttttttccatcaccatggttttttccccatggatttttctggtaaggtttttaatgaagcagatatatc 20362546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 340
Target Start/End: Complemental strand, 558217 - 558156
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaa 340  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | ||||||||||||||    
T  558217 ctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaa 558156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 348
Target Start/End: Complemental strand, 25830731 - 25830662
Alignment:
Q  280 ctgcactcttttttccttcacct-ggttttatcccattggattttacgggtaaggtttttaatgaggcag 348  Q
    ||||||||||||||||||||||  |||||||||||||||| |||| |   |||||||||||| |||||||    
T  25830731 ctgcactcttttttccttcaccaaggttttatcccattgggtttttctaataaggtttttaacgaggcag 25830662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 350
Target Start/End: Original strand, 42208729 - 42208778
Alignment:
Q  301 ctggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    |||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  42208729 ctggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 42208778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 347
Target Start/End: Complemental strand, 32899035 - 32898967
Alignment:
Q  279 actgcactcttttttccttcacctggttttatcccattggattttacgggtaaggtttttaatgaggca 347  Q
    |||||||| || || ||||||| ||||||| ||||| |||||||| | ||||||||||||||| |||||    
T  32899035 actgcacttttcttcccttcacatggttttgtcccaatggattttccaggtaaggtttttaataaggca 32898967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 350
Target Start/End: Original strand, 8247921 - 8247992
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||| ||||||||| |||| | | |||||||||||| |||||||||    
T  8247921 ctgcactctttttcccttaaccatggttttgtcccattgggttttcctgataaggtttttaacgaggcagat 8247992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 359
Target Start/End: Complemental strand, 26457191 - 26457113
Alignment:
Q  281 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagatctatcacat 359  Q
    |||||||||||||| || ||| ||||||||||||||||| |||| | |  ||||||||||| ||||||||| ||||||||    
T  26457191 tgcactcttttttcattaaccatggttttatcccattgggtttttctgaaaaggtttttaacgaggcagat-tatcacat 26457113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 350
Target Start/End: Original strand, 20125082 - 20125152
Alignment:
Q  281 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    |||||||||||| |||| ||| ||||||||||||| ||| |||| | | ||||||||||||| ||||||||    
T  20125082 tgcactctttttcccttaaccatggttttatcccactgggttttcctgataaggtttttaatcaggcagat 20125152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 346016 - 345945
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  346016 ctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 345945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 350
Target Start/End: Original strand, 6162063 - 6162134
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  6162063 ctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 6162134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 12746917 - 12746846
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||||||||| ||| |||| | ||||||||||||||||||||||||    
T  12746917 ctgcactctttttcccttaaccatggttttatcccactgggtttttctggtaaggtttttaatgaggcagat 12746846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 350
Target Start/End: Original strand, 53981909 - 53981980
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  53981909 ctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 53981980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 281 - 350
Target Start/End: Complemental strand, 2924258 - 2924188
Alignment:
Q  281 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||||||| ||| | ||||||||||| ||| |||| | ||||||||||||||||||||||||    
T  2924258 tgcactcttttttccttaaccatagttttatcccactgggttttcctggtaaggtttttaatgaggcagat 2924188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 911190 - 911122
Alignment:
Q  280 ctgcactcttttttccttcacct-ggttttatcccattggattttacgggtaaggtttttaatgaggca 347  Q
    ||||||||||||| ||||||||  |||||||||||||||| |||| | |||||||||||||| ||||||    
T  911190 ctgcactctttttcccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca 911122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 12435690 - 12435622
Alignment:
Q  280 ctgcactcttttttccttcacct-ggttttatcccattggattttacgggtaaggtttttaatgaggca 347  Q
    ||||||||||||| ||||||||  |||||||||||||||| |||| | |||||||||||||| ||||||    
T  12435690 ctgcactctttttcccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca 12435622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 29333455 - 29333523
Alignment:
Q  280 ctgcactcttttttccttcacct-ggttttatcccattggattttacgggtaaggtttttaatgaggca 347  Q
    ||||||||||||| ||||||||  |||||||||||||||| |||| | |||||||||||||| ||||||    
T  29333455 ctgcactctttttcccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca 29333523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 42410922 - 42410990
Alignment:
Q  280 ctgcactcttttttccttcacct-ggttttatcccattggattttacgggtaaggtttttaatgaggca 347  Q
    ||||||||||||| ||||||||  |||||||||||||||| |||| | |||||||||||||| ||||||    
T  42410922 ctgcactctttttcccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca 42410990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 1874340 - 1874269
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||| ||||||||| |||| | |||||||||||||| |||||||||    
T  1874340 ctgcactctttttcccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagat 1874269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 350
Target Start/End: Complemental strand, 20192933 - 20192866
Alignment:
Q  284 actcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  20192933 actctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 20192866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 281 - 347
Target Start/End: Original strand, 22748700 - 22748767
Alignment:
Q  281 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggca 347  Q
    |||||||||||| |||| ||| ||||||||||||| ||| |||| | |||||||||||||||||||||    
T  22748700 tgcactctttttcccttaaccatggttttatcccactgggttttcctggtaaggtttttaatgaggca 22748767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 350
Target Start/End: Original strand, 23200338 - 23200408
Alignment:
Q  281 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    |||||||||||| |||| ||| ||||||| ||||||||| |||| | |||||||||||||| |||||||||    
T  23200338 tgcactctttttcccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagat 23200408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 355
Target Start/End: Original strand, 6407756 - 6407832
Alignment:
Q  281 tgcactcttttttccttcacc-tgg-ttttatcccattggattttacgggtaaggtttttaatgaggcagatctatc 355  Q
    |||||||||||| |||||||| ||| |||| ||||| |||||||| | |||| ||||||||||||||||||| ||||    
T  6407756 tgcactctttttcccttcaccatggattttgtcccactggattttgctggtatggtttttaatgaggcagatatatc 6407832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 12659534 - 12659463
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| || |||| ||||||||| |||| | |||||||||||||| |||||||||    
T  12659534 ctgcactctttttcccttaaccatgtttttgtcccattgggttttcctggtaaggtttttaacgaggcagat 12659463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 350
Target Start/End: Original strand, 13999810 - 13999881
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||| ||||||| ||| |||||    
T  13999810 ctgcactctttttcccttaaccatggttttatcccattgggtttttctggtaagatttttaacgagacagat 13999881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 16326062 - 16325991
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||| | ||||||| |||| | |||||||||||||| |||||||||    
T  16326062 ctgcactctttttcccttaaccatggttttgttccattgggttttcctggtaaggtttttaacgaggcagat 16325991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 30674047 - 30673979
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggca 347  Q
    ||||||||||||| |||| ||| || |||| ||||||||| |||| | |||||||||||||| ||||||    
T  30674047 ctgcactctttttcccttaaccatgtttttgtcccattgggttttcctggtaaggtttttaacgaggca 30673979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 350
Target Start/End: Original strand, 15716438 - 15716509
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  15716438 ctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 15716509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 281 - 347
Target Start/End: Original strand, 15552679 - 15552746
Alignment:
Q  281 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggca 347  Q
    |||||||||||| |||| ||| ||||||||||||| |||||||| | ||||||||||||||| |||||    
T  15552679 tgcactctttttcccttaaccatggttttatcccactggattttcctggtaaggtttttaatcaggca 15552746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 31093295 - 31093224
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||| ||||||||| |||| | |||||||||||||| |||||||||    
T  31093295 ctgcactctttttcccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagat 31093224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 37357077 - 37357006
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||| ||||||||| |||| | |||||||||||||| |||||||||    
T  37357077 ctgcactctttttcccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagat 37357006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 40274779 - 40274708
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    |||||||||||||||||| ||| ||||||||||||||||| |||| | | |||||||||||| || ||||||    
T  40274779 ctgcactcttttttccttaaccatggttttatcccattgggttttcctgataaggtttttaacgaagcagat 40274708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 350
Target Start/End: Original strand, 29547555 - 29547625
Alignment:
Q  281 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||||||| ||| ||||||||||||| ||  |||| | | ||||||||||||||||||||||    
T  29547555 tgcactcttttttccttaaccatggttttatcccactgtgttttcctgataaggtttttaatgaggcagat 29547625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 27179292 - 27179244
Alignment:
Q  302 tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  27179292 tggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 27179244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 38990915 - 38990983
Alignment:
Q  280 ctgcactcttttttccttcacct-ggttttatcccattggattttacgggtaaggtttttaatgaggca 347  Q
    |||| |||||||| ||||||||  |||||||||||||||| |||| | |||||||||||||| ||||||    
T  38990915 ctgcgctctttttcccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca 38990983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 350
Target Start/End: Original strand, 11659989 - 11660060
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||| ||||||||| |||| | | |||||||||||| |||||||||    
T  11659989 ctgcactctttttcccttaaccatggttttgtcccattgggttttcctgataaggtttttaacgaggcagat 11660060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 18535327 - 18535256
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||| ||||||||  |||| | |||||||||||||| |||||||||    
T  18535327 ctgcactctttttcccttaaccatggttttgtcccattgagttttcctggtaaggtttttaacgaggcagat 18535256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 33493281 - 33493211
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||  | |||||||||||||| |||||||||    
T  33493281 ctgcactctttttcccttaaccatggttttatcccattgggtttc-ctggtaaggtttttaacgaggcagat 33493211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 350
Target Start/End: Complemental strand, 145732 - 145664
Alignment:
Q  283 cactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    |||||||||| |||| ||| ||||||||| ||| ||| |||| | | ||||||||||||||||||||||    
T  145732 cactctttttcccttaaccatggttttattccactgggttttcctgataaggtttttaatgaggcagat 145664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 350
Target Start/End: Original strand, 17721554 - 17721602
Alignment:
Q  302 tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||||||| |||| | ||||| ||||||||||| ||||||    
T  17721554 tggttttatcccattggtttttcctggtaatgtttttaatgaagcagat 17721602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 21247491 - 21247559
Alignment:
Q  280 ctgcactcttttttccttcacct-ggttttatcccattggattttacgggtaaggtttttaatgaggca 347  Q
    ||||||||||||| ||||||||  |||||||||||||||| |||| | |||||||||||||| ||||||    
T  21247491 ctgcactctttttcccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca 21247559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 27679968 - 27679900
Alignment:
Q  280 ctgcactcttttttccttcacct-ggttttatcccattggattttacgggtaaggtttttaatgaggca 347  Q
    ||||||||||||| ||||||||  |||||||||||||||| |||| | |||||||||||||| ||||||    
T  27679968 ctgcactctttttcccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca 27679900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 350
Target Start/End: Complemental strand, 30714563 - 30714493
Alignment:
Q  281 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    |||||||||||| |||| ||| ||||||| ||||||||| |||| | |||||||||||||| |||||||||    
T  30714563 tgcactctttttcccttaaccatggttttgtcccattgggtttttctggtaaggtttttaacgaggcagat 30714493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 350
Target Start/End: Complemental strand, 30722340 - 30722270
Alignment:
Q  281 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    |||||||||||| |||| ||| ||||||| ||||||||| |||| | |||||||||||||| |||||||||    
T  30722340 tgcactctttttcccttaaccatggttttgtcccattgggtttttctggtaaggtttttaacgaggcagat 30722270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 37209525 - 37209594
Alignment:
Q  280 ctgcactctttttt-ccttcacct-ggttttatcccattggattttacgggtaaggtttttaatgaggca 347  Q
    |||||||||||||| ||||||||  |||||||||||||||| |||| | |||||||||||||| ||||||    
T  37209525 ctgcactctttttttccttcaccaaggttttatcccattgggtttttctggtaaggtttttaacgaggca 37209594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 350
Target Start/End: Original strand, 10738785 - 10738852
Alignment:
Q  283 cactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||||| ||| ||||||||||||| ||| |||| | |||||| |||||||||||||||||    
T  10738785 cactcttttttccttaaccatggttttatcccactgg-ttttcccggtaagatttttaatgaggcagat 10738852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 350
Target Start/End: Original strand, 23429349 - 23429417
Alignment:
Q  283 cactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    |||||||||| |||| ||| ||| ||||||||| ||| |||| | ||||||||||||||||||||||||    
T  23429349 cactctttttcccttaaccatggatttatcccactgggttttcctggtaaggtttttaatgaggcagat 23429417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 347
Target Start/End: Original strand, 8509597 - 8509664
Alignment:
Q  281 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggca 347  Q
    |||| ||||||| |||| ||| ||||||||||||||||||||||   |||||||||||||| ||||||    
T  8509597 tgcattctttttcccttaaccatggttttatcccattggattttcttggtaaggtttttaacgaggca 8509664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 350
Target Start/End: Original strand, 41048696 - 41048744
Alignment:
Q  302 tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||||||| |||| | || |||||||||||| ||||||||    
T  41048696 tggttttatcccattgggttttcctggaaaggtttttaataaggcagat 41048744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 23427297 - 23427365
Alignment:
Q  280 ctgcactcttttttccttcacct-ggttttatcccattggattttacgggtaaggtttttaatgaggca 347  Q
    ||||||||||||| ||||||||  |||||||||||||||| |||| | |||||||||||||| ||||||    
T  23427297 ctgcactctttttcccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca 23427365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 350
Target Start/End: Original strand, 25397733 - 25397801
Alignment:
Q  283 cactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    |||||||||| |||| ||| || |||||||||| |||||||| | ||||||||||||||||||||||||    
T  25397733 cactctttttcccttaaccatgattttatcccactggattttcctggtaaggtttttaatgaggcagat 25397801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 323
Target Start/End: Complemental strand, 19816912 - 19816868
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggatttt 323  Q
    ||||||||||||| || ||||| ||||||||||||||||||||||    
T  19816912 ctgcactctttttcccctcaccatggttttatcccattggatttt 19816868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 348
Target Start/End: Complemental strand, 21847824 - 21847756
Alignment:
Q  280 ctgcactcttttttccttcacctggttttatcccattggattttacgggtaaggtttttaatgaggcag 348  Q
    |||||||||||||||||||| |  |||||||| || | ||||||   | ||||||||||||||||||||    
T  21847824 ctgcactcttttttccttcatcaagttttatctcaatagattttcttgttaaggtttttaatgaggcag 21847756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 350
Target Start/End: Original strand, 13837 - 13907
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||| ||||||||| |||| |||||||||||||||| |||||||||    
T  13837 ctgcactcttttt-ccttaaccatggttttgtcccattgggttttccgggtaaggtttttaacgaggcagat 13907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 350
Target Start/End: Original strand, 111686 - 111757
Alignment:
Q  280 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||||| |||| ||| ||||||| ||||||||| |||| | |||||||||||||| |||||||||    
T  111686 ctgcactctttttcccttaaccatggttttgtcccattgggtttttctggtaaggtttttaacgaggcagat 111757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 350
Target Start/End: Original strand, 11409 - 11479
Alignment:
Q  281 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    |||||||||||| |||| | | ||||||||||||| ||| |||| | ||||||||||||||||||||||||    
T  11409 tgcactctttttcccttaaacatggttttatcccactgggtttttctggtaaggtttttaatgaggcagat 11479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 340
Target Start/End: Complemental strand, 67741 - 67681
Alignment:
Q  280 ctgcactcttttttccttcacctggttttatcccattggattttacgggtaaggtttttaa 340  Q
    ||||||||||||||||||||||  ||||||||| ||||||||||   | ||||||||||||    
T  67741 ctgcactcttttttccttcaccaagttttatcctattggattttcttgttaaggtttttaa 67681  T

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Target: scaffold0010 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 348
Target Start/End: Complemental strand, 159740 - 159676
Alignment:
Q  285 ctcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcag 348  Q
    ||||||||||| ||||| |||||||||||| |||| |||| | |||||||||||||| |||||||    
T  159740 ctcttttttccatcaccatggttttatccctttgggttttcctggtaaggtttttaacgaggcag 159676  T

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Target: scaffold0062 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 350
Target Start/End: Original strand, 19691 - 19739
Alignment:
Q  302 tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||| | ||| |||| | ||||||||||||||||||||||||    
T  19691 tggttttatccaactgggtttttctggtaaggtttttaatgaggcagat 19739  T

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Target: scaffold0062; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 350
Target Start/End: Original strand, 29859 - 29907
Alignment:
Q  302 tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 350  Q
    ||||||||||| | ||| |||| | ||||||||||||||||||||||||    
T  29859 tggttttatccgactgggtttttctggtaaggtttttaatgaggcagat 29907  T

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