View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1056_low_32 (Length: 437)

Name: NF1056_low_32
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1056_low_32
NF1056_low_32
[»] chr3 (30 HSPs)
chr3 (118-365)||(26631471-26631710)
chr3 (118-379)||(27387644-27387901)
chr3 (121-390)||(28085788-28086053)
chr3 (136-370)||(27350893-27351135)
chr3 (118-383)||(19478173-19478448)
chr3 (240-390)||(19482065-19482215)
chr3 (265-370)||(27381058-27381162)
chr3 (119-200)||(26632306-26632387)
chr3 (118-202)||(27380762-27380846)
chr3 (242-364)||(28006831-28006956)
chr3 (121-197)||(27981180-27981256)
chr3 (278-345)||(2978511-2978579)
chr3 (278-348)||(2168925-2168996)
chr3 (278-348)||(3110782-3110853)
chr3 (278-348)||(13990646-13990717)
chr3 (278-348)||(23344190-23344261)
chr3 (279-348)||(40800912-40800982)
chr3 (325-381)||(27981373-27981429)
chr3 (278-348)||(9724898-9724969)
chr3 (127-194)||(19482255-19482322)
chr3 (278-348)||(49487001-49487072)
chr3 (279-348)||(13980930-13981000)
chr3 (281-344)||(12990745-12990809)
chr3 (278-348)||(21883235-21883306)
chr3 (118-197)||(28006702-28006781)
chr3 (279-348)||(15752772-15752842)
chr3 (279-344)||(17032937-17033003)
chr3 (278-323)||(21477323-21477369)
chr3 (135-185)||(27380924-27380974)
chr3 (279-354)||(10937113-10937189)
[»] scaffold1163 (1 HSPs)
scaffold1163 (118-413)||(1138-1426)
[»] chr2 (13 HSPs)
chr2 (118-380)||(22395734-22395990)
chr2 (278-348)||(636096-636167)
chr2 (278-348)||(22430162-22430233)
chr2 (278-348)||(22435756-22435827)
chr2 (281-348)||(14898600-14898668)
chr2 (278-348)||(7910237-7910308)
chr2 (278-348)||(19437813-19437884)
chr2 (279-349)||(25231798-25231869)
chr2 (278-348)||(43776806-43776877)
chr2 (303-348)||(7385129-7385174)
chr2 (288-348)||(16443605-16443666)
chr2 (278-348)||(43287666-43287737)
chr2 (300-348)||(11311886-11311933)
[»] scaffold0043 (7 HSPs)
scaffold0043 (265-370)||(50551-50656)
scaffold0043 (278-410)||(46253-46385)
scaffold0043 (118-207)||(29434-29523)
scaffold0043 (118-207)||(44292-44381)
scaffold0043 (121-193)||(31244-31316)
scaffold0043 (121-197)||(50734-50810)
scaffold0043 (121-194)||(46103-46176)
[»] scaffold1805 (2 HSPs)
scaffold1805 (272-390)||(186-310)
scaffold1805 (118-202)||(34-118)
[»] chr5 (10 HSPs)
chr5 (278-348)||(19780289-19780360)
chr5 (279-345)||(25365670-25365737)
chr5 (279-345)||(25365943-25366010)
chr5 (278-348)||(28367255-28367326)
chr5 (281-348)||(30957871-30957939)
chr5 (278-348)||(16673320-16673391)
chr5 (278-348)||(17945562-17945633)
chr5 (278-348)||(18080228-18080299)
chr5 (278-348)||(23053655-23053726)
chr5 (278-348)||(35264817-35264888)
[»] chr7 (15 HSPs)
chr7 (278-345)||(29185340-29185408)
chr7 (278-348)||(16648237-16648308)
chr7 (278-348)||(17622598-17622669)
chr7 (278-348)||(25498869-25498940)
chr7 (278-348)||(32148291-32148362)
chr7 (278-348)||(42162529-42162600)
chr7 (278-348)||(340570-340641)
chr7 (279-353)||(20362471-20362546)
chr7 (278-338)||(558156-558217)
chr7 (278-346)||(25830662-25830731)
chr7 (299-348)||(42208729-42208778)
chr7 (277-345)||(32898967-32899035)
chr7 (278-348)||(8247921-8247992)
chr7 (279-357)||(26457113-26457191)
chr7 (279-348)||(20125082-20125152)
[»] scaffold0004 (1 HSPs)
scaffold0004 (278-348)||(345945-346016)
[»] chr4 (17 HSPs)
chr4 (278-348)||(6162063-6162134)
chr4 (278-348)||(12746846-12746917)
chr4 (278-348)||(53981909-53981980)
chr4 (279-348)||(2924188-2924258)
chr4 (278-345)||(911122-911190)
chr4 (278-345)||(12435622-12435690)
chr4 (278-345)||(29333455-29333523)
chr4 (278-345)||(42410922-42410990)
chr4 (278-348)||(1874269-1874340)
chr4 (282-348)||(20192866-20192933)
chr4 (279-345)||(22748700-22748767)
chr4 (279-348)||(23200338-23200408)
chr4 (279-353)||(6407756-6407832)
chr4 (278-348)||(12659463-12659534)
chr4 (278-348)||(13999810-13999881)
chr4 (278-348)||(16325991-16326062)
chr4 (278-345)||(30673979-30674047)
[»] chr1 (13 HSPs)
chr1 (278-348)||(15716438-15716509)
chr1 (279-345)||(15552679-15552746)
chr1 (278-348)||(31093224-31093295)
chr1 (278-348)||(37357006-37357077)
chr1 (278-348)||(40274708-40274779)
chr1 (279-348)||(29547555-29547625)
chr1 (300-348)||(27179244-27179292)
chr1 (278-345)||(38990915-38990983)
chr1 (278-348)||(11659989-11660060)
chr1 (278-348)||(18535256-18535327)
chr1 (278-348)||(33493211-33493281)
chr1 (281-348)||(145664-145732)
chr1 (300-348)||(17721554-17721602)
[»] chr8 (9 HSPs)
chr8 (278-345)||(21247491-21247559)
chr8 (278-345)||(27679900-27679968)
chr8 (279-348)||(30714493-30714563)
chr8 (279-348)||(30722270-30722340)
chr8 (278-345)||(37209525-37209594)
chr8 (281-348)||(10738785-10738852)
chr8 (281-348)||(23429349-23429417)
chr8 (279-345)||(8509597-8509664)
chr8 (300-348)||(41048696-41048744)
[»] chr6 (4 HSPs)
chr6 (278-345)||(23427297-23427365)
chr6 (281-348)||(25397733-25397801)
chr6 (278-321)||(19816868-19816912)
chr6 (278-346)||(21847756-21847824)
[»] scaffold0102 (1 HSPs)
scaffold0102 (278-348)||(13837-13907)
[»] scaffold0014 (1 HSPs)
scaffold0014 (278-348)||(111686-111757)
[»] scaffold0066 (1 HSPs)
scaffold0066 (279-348)||(11409-11479)
[»] scaffold0054 (1 HSPs)
scaffold0054 (278-338)||(67681-67741)
[»] scaffold0010 (1 HSPs)
scaffold0010 (283-346)||(159676-159740)
[»] scaffold0062 (2 HSPs)
scaffold0062 (300-348)||(19691-19739)
scaffold0062 (300-348)||(29859-29907)


Alignment Details
Target: chr3 (Bit Score: 175; Significance: 5e-94; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 118 - 365
Target Start/End: Original strand, 26631471 - 26631710
Alignment:
Q  118 aagagaagctgaacttgcgaggaatttcgcaacagaaggctttgcaaatttaaaatcatcctttcctacattttaggaaggaacctcacaaaaatacaaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||        |    
T  26631471 aagagaagctgaacttgcgaggaatttcgcaacagaaggctttgcaaatttaaaatcatcctttcctacattttaggagggagcctcacaa--------a 26631562  T
Q  218 aataggatagggtgtgattagtgtttttgttaatgtcgtcttgtttatgtatgcttagtactgcactcttttttccttcacctggttttatcccattgga 317  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||     
T  26631563 aataggatagggtgtgattagtgtttttgttaatgtcgttttgtttatgtaagcttagtactgcgctcttttttccttcatctggttttatcccattggg 26631662  T
Q  318 ttttacgggtaaggtttttaatgaggcagatctatcacattgttattc 365  Q
    ||||||  |||||||||||||||| |||||| ||||||||||||||||    
T  26631663 ttttacaagtaaggtttttaatgatgcagatgtatcacattgttattc 26631710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 118 - 379
Target Start/End: Complemental strand, 27387901 - 27387644
Alignment:
Q  118 aagagaagctgaacttgcgaggaatttcgcaacagaaggctttgcaaatttaaaatcatcctttcctacattttaggaaggaacctcacaaaaatacaaa 217  Q
    |||||||||||||| ||| |||||||| ||||||||||||||| | |||||||| || || |||||||||| ||||||||||||| ||||  ||          
T  27387901 aagagaagctgaacgtgctaggaatttggcaacagaaggcttttctaatttaaagtcttcatttcctacatattaggaaggaaccccacatgaa------ 27387808  T
Q  218 aataggatagggtgtgattagtgtttttgttaatgtcgtcttgtttatgtatgc--ttagtactgcactcttttttccttcacctggttttatcccattg 315  Q
    |||||| ||||||  |||||  || |||||||||||| | |||||||||||||   |||||| ||| ||||||||||||||| |||||||||||||||||    
T  27387807 aataggttagggtacgattatggtgtttgttaatgtcattttgtttatgtatgtgtttagtaatgcgctcttttttccttcatctggttttatcccattg 27387708  T
Q  316 gattttacgggtaaggtttttaatgaggcagatctatcacattgttattcccttgagtattgat 379  Q
    | |||||| |||||||||||||||||||||  | ||| ||| | ||||||||||| | ||||||    
T  27387707 ggttttacaggtaaggtttttaatgaggcaactgtattacaatattattcccttgtgcattgat 27387644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 121 - 390
Target Start/End: Original strand, 28085788 - 28086053
Alignment:
Q  121 agaagctgaacttgcgaggaatttcgcaacagaaggctttgcaaatttaaaatcatcctttcctacattttaggaaggaacctcacaaaaatacaaaaat 220  Q
    ||||||||||| || || ||| || |||||||||||||||| |||||||||||| |||||||||||||||||||||| |||       ||| |||||| |    
T  28085788 agaagctgaacgtgtgatgaagttggcaacagaaggctttgtaaatttaaaatcttcctttcctacattttaggaagaaac-------aaacacaaaatt 28085880  T
Q  221 aggatagggtgt---gattagtgtttttgttaatgtcgtcttgtttatgtatgcttagtactgcactcttttttccttcacctggttttatcccattgga 317  Q
    ||| ||||   |   |||||  |||||||||||||||   ||||||||||||||||||| |||| |||||||| ||||||||| |||||||||  || |     
T  28085881 aggctaggtcatcatgattatcgtttttgttaatgtcactttgtttatgtatgcttagtgctgcgctctttttcccttcacctagttttatccttttagg 28085980  T
Q  318 ttttacgggtaaggtttttaatgaggcagatctatcacattgttattcccttgagtattgattggactagtcc 390  Q
    |||||| |||||||||||||||||||||| | ||||  ||||||||||| ||| |||||||| || |||||||    
T  28085981 ttttacaggtaaggtttttaatgaggcagttgtatcctattgttattccgttgtgtattgataggcctagtcc 28086053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 136 - 370
Target Start/End: Original strand, 27350893 - 27351135
Alignment:
Q  136 gaggaatttcgcaacagaaggctttgcaaatttaaaatcatcctttcctacattttaggaaggaacctcacaaaaat------acaaaaataggataggg 229  Q
    ||||||||| ||||||||||||||||| ||||||||||| |||||||||||| ||||||||| |||   | | | |       ||||||||| | | |||    
T  27350893 gaggaatttggcaacagaaggctttgctaatttaaaatcttcctttcctacaatttaggaag-aactagatatatacctgcacacaaaaataagttgggg 27350991  T
Q  230 ---tgtgattagtgtttttgttaatgtcgtcttgtttatgtatgcttagtactgcactcttttttccttcacctggttttatcccattggattttacggg 326  Q
       ||| |||| ||||||| |||||| ||| || ||| |||| || |||| ||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  27350992 cgttgtaattattgtttttcttaatgccgtgttttttttgtacgcctagtgctgcactcttttttccttcacctggttttatcccattgggttttacagg 27351091  T
Q  327 taaggtttttaatgaggcagatctatcacattgttattcccttg 370  Q
    |||||||||||||||||||| | ||||||| |||||||||||||    
T  27351092 taaggtttttaatgaggcagttgtatcacactgttattcccttg 27351135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 118 - 383
Target Start/End: Original strand, 19478173 - 19478448
Alignment:
Q  118 aagagaagctgaacttgcgaggaatttcgcaacagaaggctttgcaaatttaaaatcatcctttcctacattttaggaaggaacctcacaaaa------a 211  Q
    |||||||||||||| |||||||||| | |||||||||||||||||| |||| || || || ||||||||||||||||||||||||  | | |       |    
T  19478173 aagagaagctgaacgtgcgaggaatctggcaacagaaggctttgcagatttgaagtcttcatttcctacattttaggaaggaaccagatatatgccccca 19478272  T
Q  212 tacaaaaataggatagggtgt---gattagtgtttttgttaatgtcgtcttgtttatgtatgcttagtactgcactctttt--ttccttcacctggtttt 306  Q
     ||||||||||  |||| |||   |||||  ||||||||||||||  | |||||| |||||||||||| |||| || ||||  |||||||||||||||||    
T  19478273 cacaaaaatagactaggttgtcttgattatcgtttttgttaatgtatt-ttgtttctgtatgcttagtgctgcgcttttttttttccttcacctggtttt 19478371  T
Q  307 atcccattggattttacgggtaaggtttttaatgaggcagatctatcacattgttattcccttgagtattgattgga 383  Q
    |||| ||||| |||||| |||||||||||||||||||||  | ||||||| |||| ||| |||| ||||||||||||    
T  19478372 atcctattgggttttacaggtaaggtttttaatgaggcaattgtatcacactgttgttcacttgggtattgattgga 19478448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 240 - 390
Target Start/End: Complemental strand, 19482215 - 19482065
Alignment:
Q  240 gtttttgttaatgtcgtcttgtttatgtatgcttagtactgcactcttttttccttcacctggttttatcccattggattttacgggtaaggtttttaat 339  Q
    |||||||||||| || | |||||| |||||| ||| || |||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||    
T  19482215 gtttttgttaatctcattttgtttctgtatgtttactattgcactcttttttccttcacctggttttatcccattgggttttacaggcaaggtttttaat 19482116  T
Q  340 gaggcagatctatcacattgttattcccttgagtattgattggactagtcc 390  Q
    ||||||| | |   ||||| ||||||||||| ||||||||||| |||||||    
T  19482115 gaggcagttgtccgacattattattcccttgtgtattgattggcctagtcc 19482065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 265 - 370
Target Start/End: Original strand, 27381058 - 27381162
Alignment:
Q  265 tgtatgcttagtactgcactcttttttccttcacctggttttatcccattggattttacgggtaaggtttttaatgaggcagatctatcacattgttatt 364  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||| | ||| ||| |||||||    
T  27381058 tgtacgcttagtgctgcactcttttttccttcacctggttttatcccattgggttttac-agtaaggtttttaatgaggcagttgtatgacactgttatt 27381156  T
Q  365 cccttg 370  Q
    ||||||    
T  27381157 cccttg 27381162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 119 - 200
Target Start/End: Original strand, 26632306 - 26632387
Alignment:
Q  119 agagaagctgaacttgcgaggaatttcgcaacagaaggctttgcaaatttaaaatcatcctttcctacattttaggaaggaa 200  Q
    ||||||||||| | |||||||||||| |||| |||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  26632306 agagaagctgagcgtgcgaggaatttggcaaaagaaggctttacaaatttaaaatcatcatttcctacattttaggaaggaa 26632387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 118 - 202
Target Start/End: Original strand, 27380762 - 27380846
Alignment:
Q  118 aagagaagctgaacttgcgaggaatttcgcaacagaaggctttgcaaatttaaaatcatcctttcctacattttaggaaggaacc 202  Q
    |||||||||||||| || ||||||| | |||||||||||||||||||||||||| || || ||||||||||||||||||||||||    
T  27380762 aagagaagctgaacgtgtgaggaatctggcaacagaaggctttgcaaatttaaagtcttcatttcctacattttaggaaggaacc 27380846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 242 - 364
Target Start/End: Original strand, 28006831 - 28006956
Alignment:
Q  242 ttttgttaatgtcgtcttgtttatg---tatgcttagtactgcactcttttttccttcacctggttttatcccattggattttacgggtaaggtttttaa 338  Q
    |||| |||||||||| ||||||||    || ||||||| ||||||||||||||||||| ||||||||||||| | ||| |||||  ||||||||||||||    
T  28006831 tttttttaatgtcgttttgtttataacatacgcttagtgctgcactcttttttccttcccctggttttatcctactgggttttataggtaaggtttttaa 28006930  T
Q  339 tgaggcagatctatcacattgttatt 364  Q
    |||||||| | |||| || |||||||    
T  28006931 tgaggcagttgtatcccaatgttatt 28006956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 27981180 - 27981256
Alignment:
Q  121 agaagctgaacttgcgaggaatttcgcaacagaaggctttgcaaatttaaaatcatcctttcctacattttaggaag 197  Q
    ||||||||||| | |||||||||| | ||||||||||||||| ||||||||||| || ||||||||| |||||||||    
T  27981180 agaagctgaacgtacgaggaatttggaaacagaaggctttgctaatttaaaatcttcatttcctacaatttaggaag 27981256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 278 - 345
Target Start/End: Complemental strand, 2978579 - 2978511
Alignment:
Q  278 ctgcactcttttttccttcacct-ggttttatcccattggattttacgggtaaggtttttaatgaggca 345  Q
    ||||||||||||||||||||||  |||||||||||||||| |||| | |||||||||||||| ||||||    
T  2978579 ctgcactcttttttccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca 2978511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 2168996 - 2168925
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  2168996 ctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 2168925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 3110853 - 3110782
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  3110853 ctgcactctttttcccttaaccatggttttatcccattgggtttttctggtaaggtttttaacgaggcagat 3110782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 348
Target Start/End: Original strand, 13990646 - 13990717
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  13990646 ctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 13990717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 348
Target Start/End: Original strand, 23344190 - 23344261
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  23344190 ctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 23344261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 279 - 348
Target Start/End: Complemental strand, 40800982 - 40800912
Alignment:
Q  279 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    |||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  40800982 tgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 40800912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 381
Target Start/End: Original strand, 27981373 - 27981429
Alignment:
Q  325 ggtaaggtttttaatgaggcagatctatcacattgttattcccttgagtattgattg 381  Q
    |||||||||||||||||||||| | ||| ||| ||||||||||||| ||||||||||    
T  27981373 ggtaaggtttttaatgaggcagttgtatgacactgttattcccttgtgtattgattg 27981429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 9724969 - 9724898
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||||||||||| | |||| | |||||||||||||| |||||||||    
T  9724969 ctgcactctttttcccttaaccatggttttatcccatttggttttcctggtaaggtttttaacgaggcagat 9724898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 19482322 - 19482255
Alignment:
Q  127 tgaacttgcgaggaatttcgcaacagaaggctttgcaaatttaaaatcatcctttcctacattttagg 194  Q
    ||||| |||||||| ||| |||| |||||||||| ||||||||||||| |  ||||||||||||||||    
T  19482322 tgaacgtgcgaggactttggcaaaagaaggctttacaaatttaaaatctttgtttcctacattttagg 19482255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 49487072 - 49487001
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||| ||||||||| |||| | |||||||||||||| |||||||||    
T  49487072 ctgcactctttttcccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagat 49487001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 348
Target Start/End: Complemental strand, 13981000 - 13980930
Alignment:
Q  279 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    |||||||||||| |||| ||| ||||||| ||||||||| |||| | |||||||||||||| |||||||||    
T  13981000 tgcactctttttcccttaaccatggttttttcccattgggtttttctggtaaggtttttaacgaggcagat 13980930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 344
Target Start/End: Original strand, 12990745 - 12990809
Alignment:
Q  281 cactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggc 344  Q
    ||||||||||||||| | | ||||||||||||| | |||||| | ||||||||||||||||||||    
T  12990745 cactcttttttccttaagcatggttttatcccactagatttttctggtaaggtttttaatgaggc 12990809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 348
Target Start/End: Original strand, 21883235 - 21883306
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||| ||||||||| ||||   |||||||||||||| |||||||||    
T  21883235 ctgcactctttttcccttaaccatggttttgtcccattgggttttcttggtaaggtttttaacgaggcagat 21883306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 197
Target Start/End: Original strand, 28006702 - 28006781
Alignment:
Q  118 aagagaagctgaacttgcgaggaatttcgcaacagaaggctttgcaaatttaaaatcatcctttcctacattttaggaag 197  Q
    ||||||||| |||| || ||| || || |||| ||||||||||||||||||||| || |  |||||||||||||| ||||    
T  28006702 aagagaagcagaacgtgtgagaaagttggcaaaagaaggctttgcaaatttaaagtctttgtttcctacattttaagaag 28006781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 348
Target Start/End: Complemental strand, 15752842 - 15752772
Alignment:
Q  279 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    |||||||||||| |||| | | ||||||| ||||||||| |||| | |||||||||||||| |||||||||    
T  15752842 tgcactctttttcccttaatcatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagat 15752772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 17032937 - 17033003
Alignment:
Q  279 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggc 344  Q
    ||||||||||||||||| ||| ||||||||||||||| | ||||   |||||||||||||| |||||    
T  17032937 tgcactcttttttccttaaccatggttttatcccattaggttttcttggtaaggtttttaacgaggc 17033003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 21477323 - 21477369
Alignment:
Q  278 ctgcactcttttttccttcacct-ggttttatcccattggattttac 323  Q
    ||||||||||||| ||||||||| |||||||||||||||| ||||||    
T  21477323 ctgcactctttttcccttcacctaggttttatcccattgggttttac 21477369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 27380924 - 27380974
Alignment:
Q  135 cgaggaatttcgcaacagaaggctttgcaaatttaaaatcatcctttccta 185  Q
    |||||||||| | ||||||||||||||| ||||||||||| || |||||||    
T  27380924 cgaggaatttggtaacagaaggctttgctaatttaaaatcttcatttccta 27380974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 354
Target Start/End: Original strand, 10937113 - 10937189
Alignment:
Q  279 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagatctatca 354  Q
    ||||||||| || |||||||| ||||||| ||||| ||| ||||   |||||||||||||||||| ||||| |||||    
T  10937113 tgcactcttcttcccttcaccatggttttgtcccaatgggtttttatggtaaggtttttaatgagacagatatatca 10937189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1163 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 118 - 413
Target Start/End: Original strand, 1138 - 1426
Alignment:
Q  118 aagagaagctgaacttgcgaggaatttcgcaacagaaggctttgcaaatttaaaatcatcctttcctacattttaggaaggaacctcacaaaaatacaaa 217  Q
    |||||||||||| | |||||||||||| ||||||||||||||| | |||||||| || || |||||||||||||||||||||||| ||||      | ||    
T  1138 aagagaagctgagcgtgcgaggaatttggcaacagaaggcttttctaatttaaagtcttcgtttcctacattttaggaaggaaccccaca------cgaa 1231  T
Q  218 aataggatagggtgtgattagtgtttttgttaatgtcgtcttgtttatgtatgcttagtactgcactcttttttccttcacctggttttatcccattgga 317  Q
    |||||| |||||| ||||||  || ||||||||||| || ||||||||||||| |||||||||| ||||||||||||||||||| |||| |||||||||     
T  1232 aataggttagggtttgattatggtgtttgttaatgttgttttgtttatgtatgtttagtactgcgctcttttttccttcacctgcttttgtcccattggg 1331  T
Q  318 ttttacgggtaaggtttttaatgaggcagatctatcacattgttattcccttgagtattgattggactagtcctccaagttgtatattctttttat 413  Q
    |||||| |||||||||||||||||||||  | ||| ||| | ||||||||||| | |||||||   ||||||| | |||||| || ||||||||||    
T  1332 ttttacaggtaaggtttttaatgaggcaactgtattacaatattattcccttgtgaattgattttcctagtcc-caaagttgcatcttctttttat 1426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 118 - 380
Target Start/End: Original strand, 22395734 - 22395990
Alignment:
Q  118 aagagaagctgaacttgcgaggaatttcgcaacagaaggctttgcaaatttaaaatcatcctttcctacattttaggaaggaacctcacaaaaatacaaa 217  Q
    |||||||||||||| |||||||||||| ||| ||||||||||| | |||||||| || || |||||||||||||||||||||| | ||||      | ||    
T  22395734 aagagaagctgaacgtgcgaggaatttggcagcagaaggcttttctaatttaaagtcttcgtttcctacattttaggaaggaagcacaca------cgaa 22395827  T
Q  218 aataggatagggtgtgattagtgtttttgttaatgtcgtcttgtttatgtatgcttagtactgcactcttttttccttcacctggttttatcccattgga 317  Q
    ||| || |||||||||||||  || |||| |||||| || ||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||     
T  22395828 aattggttagggtgtgattatggtgtttgctaatgttgttttgtttatgtatgtttagtactgcgctcttttttccttcacctggttttgtcccattggg 22395927  T
Q  318 ttttacgggtaaggtttttaatgaggcagatctatcacattgttattcccttgagtattgatt 380  Q
    |||||| ||| ||||||||||||||| |  | ||| ||| | ||||||||||| | |||||||    
T  22395928 ttttacaggttaggtttttaatgagggaactgtattacaatattattcccttgtgaattgatt 22395990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 348
Target Start/End: Original strand, 636096 - 636167
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  636096 ctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 636167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 348
Target Start/End: Original strand, 22430162 - 22430233
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  22430162 ctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 22430233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 348
Target Start/End: Original strand, 22435756 - 22435827
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  22435756 ctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 22435827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 348
Target Start/End: Original strand, 14898600 - 14898668
Alignment:
Q  281 cactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    |||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  14898600 cactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 14898668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 7910308 - 7910237
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||| ||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  7910308 ctgcactatttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 7910237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 19437884 - 19437813
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||| ||||||||| |||| | |||||||||||||| |||||||||    
T  19437884 ctgcactctttttgccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagat 19437813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 349
Target Start/End: Original strand, 25231798 - 25231869
Alignment:
Q  279 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagatc 349  Q
    |||||||||||| |||| ||| ||||||||||||| | |||||| | ||||||||||||||||||| |||||    
T  25231798 tgcactctttttcccttaaccatggttttatcccactagattttcctggtaaggtttttaatgaggaagatc 25231869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 348
Target Start/End: Original strand, 43776806 - 43776877
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | ||||| |||||||| |||||||||    
T  43776806 ctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaagtttttaacgaggcagat 43776877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 348
Target Start/End: Complemental strand, 7385174 - 7385129
Alignment:
Q  303 ttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    |||||||||| |||||||| | ||||||||||||||||||||||||    
T  7385174 ttttatcccactggattttcctggtaaggtttttaatgaggcagat 7385129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 348
Target Start/End: Complemental strand, 16443666 - 16443605
Alignment:
Q  288 ttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    |||||||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  16443666 ttttccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 16443605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 43287737 - 43287666
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||| ||||||||  |||| | |||||||||||||| |||||||||    
T  43287737 ctgcactctttttcccttaaccatggttttgtcccattgagttttcctggtaaggtttttaacgaggcagat 43287666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 348
Target Start/End: Original strand, 11311886 - 11311933
Alignment:
Q  300 tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| ||| |||| | ||||||||||||||||||||||||    
T  11311886 tggttttatcccactgg-ttttcctggtaaggtttttaatgaggcagat 11311933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 74; Significance: 8e-34; HSPs: 7)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 265 - 370
Target Start/End: Complemental strand, 50656 - 50551
Alignment:
Q  265 tgtatgcttagtactgcactcttttttccttcacctggttttatcccattggattttacgggtaaggtttttaatgaggcagatctatcacattgttatt 364  Q
    |||| ||||||| |||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||| | ||||||| |||||||    
T  50656 tgtacgcttagtgctgcactcttttttccttcacctggttttaacccattgggttttacaggtaaggtttttaatgaggcagttatatcacactgttatt 50557  T
Q  365 cccttg 370  Q
    ||||||    
T  50556 cccttg 50551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 278 - 410
Target Start/End: Original strand, 46253 - 46385
Alignment:
Q  278 ctgcactcttttttccttcacctggttttatcccattggattttacgggtaaggtttttaatgaggcagatctatcacattgttattcccttgagtattg 377  Q
    |||||||||||||||||| ||||||||||||| |||||||||| || |||||||||||||||||||||| | ||  |||||||||||||||||  |||||    
T  46253 ctgcactcttttttcctttacctggttttatctcattggatttcacaggtaaggtttttaatgaggcagctgtacaacattgttattcccttgtatattg 46352  T
Q  378 attggactagtcctccaagttgtatattctttt 410  Q
    | |||  |||||| |||  |||||| |||||||    
T  46353 aatggcatagtcccccattttgtatcttctttt 46385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 118 - 207
Target Start/End: Original strand, 29434 - 29523
Alignment:
Q  118 aagagaagctgaacttgcgaggaatttcgcaacagaaggctttgcaaatttaaaatcatcctttcctacattttaggaaggaacctcaca 207  Q
    |||| |||||||||||||||||||||| ||||||||||||||| | |||||||| || || |||||||||||||||||||||||| ||||    
T  29434 aagaaaagctgaacttgcgaggaatttggcaacagaaggcttttctaatttaaagtcttcgtttcctacattttaggaaggaaccccaca 29523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 118 - 207
Target Start/End: Original strand, 44292 - 44381
Alignment:
Q  118 aagagaagctgaacttgcgaggaatttcgcaacagaaggctttgcaaatttaaaatcatcctttcctacattttaggaaggaacctcaca 207  Q
    |||| ||||||||||||| |||||||| ||||||||| ||||| | |||||||| || || |||||||||||||||||||||||| ||||    
T  44292 aagaaaagctgaacttgcaaggaatttggcaacagaaagcttttctaatttaaagtcttcgtttcctacattttaggaaggaaccccaca 44381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 31244 - 31316
Alignment:
Q  121 agaagctgaacttgcgaggaatttcgcaacagaaggctttgcaaatttaaaatcatcctttcctacattttag 193  Q
    ||||||||||| |||||||| ||| |||| |||||||||||||||||||||||| || |||||||||||||||    
T  31244 agaagctgaacgtgcgaggactttggcaaaagaaggctttgcaaatttaaaatcttcgtttcctacattttag 31316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 121 - 197
Target Start/End: Complemental strand, 50810 - 50734
Alignment:
Q  121 agaagctgaacttgcgaggaatttcgcaacagaaggctttgcaaatttaaaatcatcctttcctacattttaggaag 197  Q
    ||||||||||| |  ||||||||| ||||||||||||||||| ||||||||||| |||||||||||| |||||||||    
T  50810 agaagctgaacgtatgaggaatttggcaacagaaggctttgctaatttaaaatcttcctttcctacaatttaggaag 50734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 121 - 194
Target Start/End: Original strand, 46103 - 46176
Alignment:
Q  121 agaagctgaacttgcgaggaatttcgcaacagaaggctttgcaaatttaaaatcatcctttcctacattttagg 194  Q
    ||||||||||| ||| |||| ||| |||| |||||||||||||||||||||||| || ||||||||||||||||    
T  46103 agaagctgaacgtgcaaggactttggcaaaagaaggctttgcaaatttaaaatcttcgtttcctacattttagg 46176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1805 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold1805
Description:

Target: scaffold1805; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 272 - 390
Target Start/End: Original strand, 186 - 310
Alignment:
Q  272 ttagtactgcactcttttttccttcacctggttttatcccattggattttacgggtaaggtttttaatgaggcag------atctatcacattgttattc 365  Q
    ||||| |||||||||||||||||||||||||||| || |||||| ||||||| ||||||||||||||||||||||       | ||||||| | ||||||    
T  186 ttagtgctgcactcttttttccttcacctggtttcattccattgaattttacaggtaaggtttttaatgaggcagttgtacttgtatcacactattattc 285  T
Q  366 ccttgagtattgattggactagtcc 390  Q
     |||| |||||||||||||||||||    
T  286 acttgggtattgattggactagtcc 310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1805; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 118 - 202
Target Start/End: Original strand, 34 - 118
Alignment:
Q  118 aagagaagctgaacttgcgaggaatttcgcaacagaaggctttgcaaatttaaaatcatcctttcctacattttaggaaggaacc 202  Q
    |||||||||||||| || ||||||| | |||||||||||||||||||||||||| || || | ||||||||||||||||| ||||    
T  34 aagagaagctgaacgtgtgaggaatctggcaacagaaggctttgcaaatttaaagtcttcatatcctacattttaggaagaaacc 118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 19780360 - 19780289
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| |||||||||||||||||||||| | |||||||||||||| |||||||||    
T  19780360 ctgcactctttttcccttaaccatggttttatcccattggatttttctggtaaggtttttaacgaggcagat 19780289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 279 - 345
Target Start/End: Complemental strand, 25365737 - 25365670
Alignment:
Q  279 tgcactcttttttccttcacct-ggttttatcccattggattttacgggtaaggtttttaatgaggca 345  Q
    |||||||||||||||||||||  |||||||||||||||| |||| | |||||||||||||||||||||    
T  25365737 tgcactcttttttccttcaccaaggttttatcccattgggttttcctggtaaggtttttaatgaggca 25365670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 279 - 345
Target Start/End: Complemental strand, 25366010 - 25365943
Alignment:
Q  279 tgcactcttttttccttcacct-ggttttatcccattggattttacgggtaaggtttttaatgaggca 345  Q
    |||||||||||||||||||||  |||||||||||||||| |||| | |||||||||||||||||||||    
T  25366010 tgcactcttttttccttcaccaaggttttatcccattgggttttcctggtaaggtttttaatgaggca 25365943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 28367326 - 28367255
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  28367326 ctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 28367255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 348
Target Start/End: Complemental strand, 30957939 - 30957871
Alignment:
Q  281 cactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    |||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  30957939 cactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 30957871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 348
Target Start/End: Original strand, 16673320 - 16673391
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||| ||||||||| |||| | |||||||||||||| |||||||||    
T  16673320 ctgcactctttttcccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagat 16673391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 348
Target Start/End: Original strand, 17945562 - 17945633
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    |||||||||||||||||| ||| ||||||||||||||||| |||| |  ||||||||||||| ||| |||||    
T  17945562 ctgcactcttttttccttaaccgtggttttatcccattgggtttttcttgtaaggtttttaacgagacagat 17945633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 18080299 - 18080228
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||||||||| ||| |||| | ||||| ||||||||||||||||||    
T  18080299 ctgcactctttttcccttaaccatggttttatcccactgggttttcctggtaaagtttttaatgaggcagat 18080228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 23053726 - 23053655
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||| ||||||||| |||| | |||||||||||||| |||||||||    
T  23053726 ctgcactctttttgccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagat 23053655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 35264888 - 35264817
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||| ||||||||| |||| | |||||||||||||| |||||||||    
T  35264888 ctgcactctttttcccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagat 35264817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 278 - 345
Target Start/End: Original strand, 29185340 - 29185408
Alignment:
Q  278 ctgcactcttttttccttcacct-ggttttatcccattggattttacgggtaaggtttttaatgaggca 345  Q
    ||||||||||||||||||||||  |||||||||||||||| |||| | |||||||||||||| ||||||    
T  29185340 ctgcactcttttttccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca 29185408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 348
Target Start/End: Original strand, 16648237 - 16648308
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  16648237 ctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 16648308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 348
Target Start/End: Original strand, 17622598 - 17622669
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  17622598 ctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 17622669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 348
Target Start/End: Original strand, 25498869 - 25498940
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  25498869 ctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 25498940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 348
Target Start/End: Original strand, 32148291 - 32148362
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  32148291 ctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 32148362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 42162600 - 42162529
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  42162600 ctgcactctttttcccttaaccatggttttatcccattgggtttttctggtaaggtttttaacgaggcagat 42162529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 340641 - 340570
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||| ||||||||| |||| | |||||||||||||| |||||||||    
T  340641 ctgcactctttttcccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagat 340570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 353
Target Start/End: Original strand, 20362471 - 20362546
Alignment:
Q  279 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagatctatc 353  Q
    ||||||||||||||| ||||| ||||||| ||||  |||||||| | ||||||||||||||||| |||||| ||||    
T  20362471 tgcactcttttttccatcaccatggttttttccccatggatttttctggtaaggtttttaatgaagcagatatatc 20362546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 338
Target Start/End: Complemental strand, 558217 - 558156
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaa 338  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | ||||||||||||||    
T  558217 ctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaa 558156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 346
Target Start/End: Complemental strand, 25830731 - 25830662
Alignment:
Q  278 ctgcactcttttttccttcacct-ggttttatcccattggattttacgggtaaggtttttaatgaggcag 346  Q
    ||||||||||||||||||||||  |||||||||||||||| |||| |   |||||||||||| |||||||    
T  25830731 ctgcactcttttttccttcaccaaggttttatcccattgggtttttctaataaggtttttaacgaggcag 25830662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 42208729 - 42208778
Alignment:
Q  299 ctggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    |||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  42208729 ctggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 42208778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 345
Target Start/End: Complemental strand, 32899035 - 32898967
Alignment:
Q  277 actgcactcttttttccttcacctggttttatcccattggattttacgggtaaggtttttaatgaggca 345  Q
    |||||||| || || ||||||| ||||||| ||||| |||||||| | ||||||||||||||| |||||    
T  32899035 actgcacttttcttcccttcacatggttttgtcccaatggattttccaggtaaggtttttaataaggca 32898967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 348
Target Start/End: Original strand, 8247921 - 8247992
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||| ||||||||| |||| | | |||||||||||| |||||||||    
T  8247921 ctgcactctttttcccttaaccatggttttgtcccattgggttttcctgataaggtttttaacgaggcagat 8247992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 357
Target Start/End: Complemental strand, 26457191 - 26457113
Alignment:
Q  279 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagatctatcacat 357  Q
    |||||||||||||| || ||| ||||||||||||||||| |||| | |  ||||||||||| ||||||||| ||||||||    
T  26457191 tgcactcttttttcattaaccatggttttatcccattgggtttttctgaaaaggtttttaacgaggcagat-tatcacat 26457113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 348
Target Start/End: Original strand, 20125082 - 20125152
Alignment:
Q  279 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    |||||||||||| |||| ||| ||||||||||||| ||| |||| | | ||||||||||||| ||||||||    
T  20125082 tgcactctttttcccttaaccatggttttatcccactgggttttcctgataaggtttttaatcaggcagat 20125152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 346016 - 345945
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  346016 ctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 345945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 348
Target Start/End: Original strand, 6162063 - 6162134
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  6162063 ctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 6162134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 12746917 - 12746846
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||||||||| ||| |||| | ||||||||||||||||||||||||    
T  12746917 ctgcactctttttcccttaaccatggttttatcccactgggtttttctggtaaggtttttaatgaggcagat 12746846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 348
Target Start/End: Original strand, 53981909 - 53981980
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  53981909 ctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 53981980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 279 - 348
Target Start/End: Complemental strand, 2924258 - 2924188
Alignment:
Q  279 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||||||| ||| | ||||||||||| ||| |||| | ||||||||||||||||||||||||    
T  2924258 tgcactcttttttccttaaccatagttttatcccactgggttttcctggtaaggtttttaatgaggcagat 2924188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 345
Target Start/End: Complemental strand, 911190 - 911122
Alignment:
Q  278 ctgcactcttttttccttcacct-ggttttatcccattggattttacgggtaaggtttttaatgaggca 345  Q
    ||||||||||||| ||||||||  |||||||||||||||| |||| | |||||||||||||| ||||||    
T  911190 ctgcactctttttcccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca 911122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 345
Target Start/End: Complemental strand, 12435690 - 12435622
Alignment:
Q  278 ctgcactcttttttccttcacct-ggttttatcccattggattttacgggtaaggtttttaatgaggca 345  Q
    ||||||||||||| ||||||||  |||||||||||||||| |||| | |||||||||||||| ||||||    
T  12435690 ctgcactctttttcccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca 12435622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 345
Target Start/End: Original strand, 29333455 - 29333523
Alignment:
Q  278 ctgcactcttttttccttcacct-ggttttatcccattggattttacgggtaaggtttttaatgaggca 345  Q
    ||||||||||||| ||||||||  |||||||||||||||| |||| | |||||||||||||| ||||||    
T  29333455 ctgcactctttttcccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca 29333523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 345
Target Start/End: Original strand, 42410922 - 42410990
Alignment:
Q  278 ctgcactcttttttccttcacct-ggttttatcccattggattttacgggtaaggtttttaatgaggca 345  Q
    ||||||||||||| ||||||||  |||||||||||||||| |||| | |||||||||||||| ||||||    
T  42410922 ctgcactctttttcccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca 42410990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 1874340 - 1874269
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||| ||||||||| |||| | |||||||||||||| |||||||||    
T  1874340 ctgcactctttttcccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagat 1874269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 282 - 348
Target Start/End: Complemental strand, 20192933 - 20192866
Alignment:
Q  282 actcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  20192933 actctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 20192866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 345
Target Start/End: Original strand, 22748700 - 22748767
Alignment:
Q  279 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggca 345  Q
    |||||||||||| |||| ||| ||||||||||||| ||| |||| | |||||||||||||||||||||    
T  22748700 tgcactctttttcccttaaccatggttttatcccactgggttttcctggtaaggtttttaatgaggca 22748767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 348
Target Start/End: Original strand, 23200338 - 23200408
Alignment:
Q  279 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    |||||||||||| |||| ||| ||||||| ||||||||| |||| | |||||||||||||| |||||||||    
T  23200338 tgcactctttttcccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagat 23200408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 353
Target Start/End: Original strand, 6407756 - 6407832
Alignment:
Q  279 tgcactcttttttccttcacc-tgg-ttttatcccattggattttacgggtaaggtttttaatgaggcagatctatc 353  Q
    |||||||||||| |||||||| ||| |||| ||||| |||||||| | |||| ||||||||||||||||||| ||||    
T  6407756 tgcactctttttcccttcaccatggattttgtcccactggattttgctggtatggtttttaatgaggcagatatatc 6407832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 12659534 - 12659463
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| || |||| ||||||||| |||| | |||||||||||||| |||||||||    
T  12659534 ctgcactctttttcccttaaccatgtttttgtcccattgggttttcctggtaaggtttttaacgaggcagat 12659463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 348
Target Start/End: Original strand, 13999810 - 13999881
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||| ||||||| ||| |||||    
T  13999810 ctgcactctttttcccttaaccatggttttatcccattgggtttttctggtaagatttttaacgagacagat 13999881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 16326062 - 16325991
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||| | ||||||| |||| | |||||||||||||| |||||||||    
T  16326062 ctgcactctttttcccttaaccatggttttgttccattgggttttcctggtaaggtttttaacgaggcagat 16325991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 345
Target Start/End: Complemental strand, 30674047 - 30673979
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggca 345  Q
    ||||||||||||| |||| ||| || |||| ||||||||| |||| | |||||||||||||| ||||||    
T  30674047 ctgcactctttttcccttaaccatgtttttgtcccattgggttttcctggtaaggtttttaacgaggca 30673979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 348
Target Start/End: Original strand, 15716438 - 15716509
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  15716438 ctgcactctttttcccttaaccatggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 15716509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 345
Target Start/End: Original strand, 15552679 - 15552746
Alignment:
Q  279 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggca 345  Q
    |||||||||||| |||| ||| ||||||||||||| |||||||| | ||||||||||||||| |||||    
T  15552679 tgcactctttttcccttaaccatggttttatcccactggattttcctggtaaggtttttaatcaggca 15552746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 31093295 - 31093224
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||| ||||||||| |||| | |||||||||||||| |||||||||    
T  31093295 ctgcactctttttcccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagat 31093224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 37357077 - 37357006
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||| ||||||||| |||| | |||||||||||||| |||||||||    
T  37357077 ctgcactctttttcccttaaccatggttttgtcccattgggttttcctggtaaggtttttaacgaggcagat 37357006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 40274779 - 40274708
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    |||||||||||||||||| ||| ||||||||||||||||| |||| | | |||||||||||| || ||||||    
T  40274779 ctgcactcttttttccttaaccatggttttatcccattgggttttcctgataaggtttttaacgaagcagat 40274708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 348
Target Start/End: Original strand, 29547555 - 29547625
Alignment:
Q  279 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||||||| ||| ||||||||||||| ||  |||| | | ||||||||||||||||||||||    
T  29547555 tgcactcttttttccttaaccatggttttatcccactgtgttttcctgataaggtttttaatgaggcagat 29547625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 348
Target Start/End: Complemental strand, 27179292 - 27179244
Alignment:
Q  300 tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||||||| |||| | |||||||||||||| |||||||||    
T  27179292 tggttttatcccattgggttttcctggtaaggtttttaacgaggcagat 27179244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 345
Target Start/End: Original strand, 38990915 - 38990983
Alignment:
Q  278 ctgcactcttttttccttcacct-ggttttatcccattggattttacgggtaaggtttttaatgaggca 345  Q
    |||| |||||||| ||||||||  |||||||||||||||| |||| | |||||||||||||| ||||||    
T  38990915 ctgcgctctttttcccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca 38990983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 348
Target Start/End: Original strand, 11659989 - 11660060
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||| ||||||||| |||| | | |||||||||||| |||||||||    
T  11659989 ctgcactctttttcccttaaccatggttttgtcccattgggttttcctgataaggtttttaacgaggcagat 11660060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 18535327 - 18535256
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||| ||||||||  |||| | |||||||||||||| |||||||||    
T  18535327 ctgcactctttttcccttaaccatggttttgtcccattgagttttcctggtaaggtttttaacgaggcagat 18535256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 33493281 - 33493211
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||||||||||||| |||  | |||||||||||||| |||||||||    
T  33493281 ctgcactctttttcccttaaccatggttttatcccattgggtttc-ctggtaaggtttttaacgaggcagat 33493211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 348
Target Start/End: Complemental strand, 145732 - 145664
Alignment:
Q  281 cactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    |||||||||| |||| ||| ||||||||| ||| ||| |||| | | ||||||||||||||||||||||    
T  145732 cactctttttcccttaaccatggttttattccactgggttttcctgataaggtttttaatgaggcagat 145664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 348
Target Start/End: Original strand, 17721554 - 17721602
Alignment:
Q  300 tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||||||| |||| | ||||| ||||||||||| ||||||    
T  17721554 tggttttatcccattggtttttcctggtaatgtttttaatgaagcagat 17721602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 345
Target Start/End: Original strand, 21247491 - 21247559
Alignment:
Q  278 ctgcactcttttttccttcacct-ggttttatcccattggattttacgggtaaggtttttaatgaggca 345  Q
    ||||||||||||| ||||||||  |||||||||||||||| |||| | |||||||||||||| ||||||    
T  21247491 ctgcactctttttcccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca 21247559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 345
Target Start/End: Complemental strand, 27679968 - 27679900
Alignment:
Q  278 ctgcactcttttttccttcacct-ggttttatcccattggattttacgggtaaggtttttaatgaggca 345  Q
    ||||||||||||| ||||||||  |||||||||||||||| |||| | |||||||||||||| ||||||    
T  27679968 ctgcactctttttcccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca 27679900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 348
Target Start/End: Complemental strand, 30714563 - 30714493
Alignment:
Q  279 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    |||||||||||| |||| ||| ||||||| ||||||||| |||| | |||||||||||||| |||||||||    
T  30714563 tgcactctttttcccttaaccatggttttgtcccattgggtttttctggtaaggtttttaacgaggcagat 30714493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 348
Target Start/End: Complemental strand, 30722340 - 30722270
Alignment:
Q  279 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    |||||||||||| |||| ||| ||||||| ||||||||| |||| | |||||||||||||| |||||||||    
T  30722340 tgcactctttttcccttaaccatggttttgtcccattgggtttttctggtaaggtttttaacgaggcagat 30722270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 345
Target Start/End: Original strand, 37209525 - 37209594
Alignment:
Q  278 ctgcactctttttt-ccttcacct-ggttttatcccattggattttacgggtaaggtttttaatgaggca 345  Q
    |||||||||||||| ||||||||  |||||||||||||||| |||| | |||||||||||||| ||||||    
T  37209525 ctgcactctttttttccttcaccaaggttttatcccattgggtttttctggtaaggtttttaacgaggca 37209594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 348
Target Start/End: Original strand, 10738785 - 10738852
Alignment:
Q  281 cactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||||| ||| ||||||||||||| ||| |||| | |||||| |||||||||||||||||    
T  10738785 cactcttttttccttaaccatggttttatcccactgg-ttttcccggtaagatttttaatgaggcagat 10738852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 348
Target Start/End: Original strand, 23429349 - 23429417
Alignment:
Q  281 cactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    |||||||||| |||| ||| ||| ||||||||| ||| |||| | ||||||||||||||||||||||||    
T  23429349 cactctttttcccttaaccatggatttatcccactgggttttcctggtaaggtttttaatgaggcagat 23429417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 345
Target Start/End: Original strand, 8509597 - 8509664
Alignment:
Q  279 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggca 345  Q
    |||| ||||||| |||| ||| ||||||||||||||||||||||   |||||||||||||| ||||||    
T  8509597 tgcattctttttcccttaaccatggttttatcccattggattttcttggtaaggtttttaacgaggca 8509664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 348
Target Start/End: Original strand, 41048696 - 41048744
Alignment:
Q  300 tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||||||| |||| | || |||||||||||| ||||||||    
T  41048696 tggttttatcccattgggttttcctggaaaggtttttaataaggcagat 41048744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 345
Target Start/End: Original strand, 23427297 - 23427365
Alignment:
Q  278 ctgcactcttttttccttcacct-ggttttatcccattggattttacgggtaaggtttttaatgaggca 345  Q
    ||||||||||||| ||||||||  |||||||||||||||| |||| | |||||||||||||| ||||||    
T  23427297 ctgcactctttttcccttcaccaaggttttatcccattgggttttcctggtaaggtttttaacgaggca 23427365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 348
Target Start/End: Original strand, 25397733 - 25397801
Alignment:
Q  281 cactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    |||||||||| |||| ||| || |||||||||| |||||||| | ||||||||||||||||||||||||    
T  25397733 cactctttttcccttaaccatgattttatcccactggattttcctggtaaggtttttaatgaggcagat 25397801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 321
Target Start/End: Complemental strand, 19816912 - 19816868
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggatttt 321  Q
    ||||||||||||| || ||||| ||||||||||||||||||||||    
T  19816912 ctgcactctttttcccctcaccatggttttatcccattggatttt 19816868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 346
Target Start/End: Complemental strand, 21847824 - 21847756
Alignment:
Q  278 ctgcactcttttttccttcacctggttttatcccattggattttacgggtaaggtttttaatgaggcag 346  Q
    |||||||||||||||||||| |  |||||||| || | ||||||   | ||||||||||||||||||||    
T  21847824 ctgcactcttttttccttcatcaagttttatctcaatagattttcttgttaaggtttttaatgaggcag 21847756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 348
Target Start/End: Original strand, 13837 - 13907
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||| ||||||||| |||| |||||||||||||||| |||||||||    
T  13837 ctgcactcttttt-ccttaaccatggttttgtcccattgggttttccgggtaaggtttttaacgaggcagat 13907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 348
Target Start/End: Original strand, 111686 - 111757
Alignment:
Q  278 ctgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||||| |||| ||| ||||||| ||||||||| |||| | |||||||||||||| |||||||||    
T  111686 ctgcactctttttcccttaaccatggttttgtcccattgggtttttctggtaaggtttttaacgaggcagat 111757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 348
Target Start/End: Original strand, 11409 - 11479
Alignment:
Q  279 tgcactcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    |||||||||||| |||| | | ||||||||||||| ||| |||| | ||||||||||||||||||||||||    
T  11409 tgcactctttttcccttaaacatggttttatcccactgggtttttctggtaaggtttttaatgaggcagat 11479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 338
Target Start/End: Complemental strand, 67741 - 67681
Alignment:
Q  278 ctgcactcttttttccttcacctggttttatcccattggattttacgggtaaggtttttaa 338  Q
    ||||||||||||||||||||||  ||||||||| ||||||||||   | ||||||||||||    
T  67741 ctgcactcttttttccttcaccaagttttatcctattggattttcttgttaaggtttttaa 67681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 346
Target Start/End: Complemental strand, 159740 - 159676
Alignment:
Q  283 ctcttttttccttcacc-tggttttatcccattggattttacgggtaaggtttttaatgaggcag 346  Q
    ||||||||||| ||||| |||||||||||| |||| |||| | |||||||||||||| |||||||    
T  159740 ctcttttttccatcaccatggttttatccctttgggttttcctggtaaggtttttaacgaggcag 159676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 348
Target Start/End: Original strand, 19691 - 19739
Alignment:
Q  300 tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||| | ||| |||| | ||||||||||||||||||||||||    
T  19691 tggttttatccaactgggtttttctggtaaggtttttaatgaggcagat 19739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 348
Target Start/End: Original strand, 29859 - 29907
Alignment:
Q  300 tggttttatcccattggattttacgggtaaggtttttaatgaggcagat 348  Q
    ||||||||||| | ||| |||| | ||||||||||||||||||||||||    
T  29859 tggttttatccgactgggtttttctggtaaggtttttaatgaggcagat 29907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University