View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1056_low_34 (Length: 433)

Name: NF1056_low_34
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1056_low_34
NF1056_low_34
[»] chr3 (5 HSPs)
chr3 (29-190)||(480026-480187)
chr3 (261-405)||(479552-479696)
chr3 (187-263)||(479812-479888)
chr3 (35-121)||(475560-475646)
chr3 (47-117)||(480154-480224)
[»] scaffold0001 (1 HSPs)
scaffold0001 (50-162)||(392775-392887)
[»] chr7 (3 HSPs)
chr7 (88-173)||(8979258-8979343)
chr7 (33-79)||(37406555-37406601)
chr7 (68-117)||(37406572-37406621)
[»] chr4 (1 HSPs)
chr4 (88-173)||(7582059-7582144)
[»] chr1 (2 HSPs)
chr1 (45-115)||(12302032-12302103)
chr1 (44-163)||(12302138-12302253)
[»] chr5 (1 HSPs)
chr5 (123-173)||(17712310-17712360)
[»] chr8 (1 HSPs)
chr8 (54-95)||(15543836-15543877)


Alignment Details
Target: chr3 (Bit Score: 150; Significance: 4e-79; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 29 - 190
Target Start/End: Complemental strand, 480187 - 480026
Alignment:
Q  29 atctagaacgatccagtccttattaatttaattgcctactatttatcattatactaacgagaacaatctagtcattattaaattaattgtctatcctctc 128  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  480187 atctagaacgatccagtccttattaatttaattgcctaatatttatcattatactaacgagaacaatctagtcattattaaattaattgtctatcctctc 480088  T
Q  129 ccaataatttcttgagtacaaaagttttgtaagttgcaggactaagtgttaaagttgaggaa 190  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  480087 ccaagaatttcttgagtacaaaagttttgtaagttgcaggactaaatgttaaagttgaggaa 480026  T

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Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 261 - 405
Target Start/End: Complemental strand, 479696 - 479552
Alignment:
Q  261 aattttaagccaaatgttccaacaggcatgtgagcattttaacttcgatttcaatgggaacacataatcccattttaacatcgatatacatatatactct 360  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  479696 aattttaagccaaatgttccaacaggcatgtgagcattttaacatcgatatcaatgggaacacataatcccattttaacatcgatatacatatatactct 479597  T
Q  361 atagttacatcccttaaagaaactaaaataaggtgtattcatttt 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  479596 atagttacatcccttaaagaaactaaaataaggtgtattcatttt 479552  T

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Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 187 - 263
Target Start/End: Complemental strand, 479888 - 479812
Alignment:
Q  187 ggaaatcattatggttctaggaccatagcttcgaaattcttgagattgctaggaaacaatgcaaaaatgcgttaaat 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  479888 ggaaatcattatggttctaggaccatagcttcgaaattcttgagattgctaggaaacaatgcaaaaatgcgataaat 479812  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 121
Target Start/End: Complemental strand, 475646 - 475560
Alignment:
Q  35 aacgatccagtccttattaatttaattgcctactatttatcattatactaacgagaacaatctagtcattattaaattaattgtcta 121  Q
    |||||| | |||||||||| ||||||||  || |||||||||||||| || | |  ||||| || || |||||||||||||||||||    
T  475646 aacgataccgtccttattattttaattgtttaatatttatcattatattatccaccacaatataatccttattaaattaattgtcta 475560  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 480224 - 480154
Alignment:
Q  47 cttattaatttaattgcctactatttatcattatactaacgagaacaatctagtcattattaaattaattg 117  Q
    |||||||||||||||| ||| |||||||| |||| ||| | ||||| ||| |||| ||||||| |||||||    
T  480224 cttattaatttaattgtctaatatttatcgttatgctatctagaacgatccagtccttattaatttaattg 480154  T

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Target: scaffold0001 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 50 - 162
Target Start/End: Original strand, 392775 - 392887
Alignment:
Q  50 attaatttaattgcctactatttatcattatactaacgagaacaatctagtcattattaaattaattgtctatcctctcccaataatttcttgagtacaa 149  Q
    ||||| ||||||||||| |||||||||||| |||| | ||||  || | ||| ||||||||||||||||||| | ||| |||| ||||||||||||| |     
T  392775 attaacttaattgcctaatatttatcattacactatctagaaggatttggtccttattaaattaattgtctaacatctaccaagaatttcttgagtatac 392874  T
Q  150 aagttttgtaagt 162  Q
    |||||||||||||    
T  392875 aagttttgtaagt 392887  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 88 - 173
Target Start/End: Complemental strand, 8979343 - 8979258
Alignment:
Q  88 agaacaatctagtcattattaaattaattgtctatcctctcccaataatttcttgagtacaaaagttttgtaagttgcaggactaa 173  Q
    |||||| ||||||| || |||||||||||||||| |||||  ||| | ||| ||||||| | ||||||||||||||||| ||||||    
T  8979343 agaacattctagtccttgttaaattaattgtctaacctctatcaagagttttttgagtatacaagttttgtaagttgcatgactaa 8979258  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 37406601 - 37406555
Alignment:
Q  33 agaacgatccagtccttattaatttaattgcctactatttatcatta 79  Q
    |||||||||  ||||||||||||||||||||||| ||||||||||||    
T  37406601 agaacgatctggtccttattaatttaattgcctaatatttatcatta 37406555  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 37406621 - 37406572
Alignment:
Q  68 tatttatcattatactaacgagaacaatctagtcattattaaattaattg 117  Q
    ||||||||||||||||| ||||||| |||| ||| ||||||| |||||||    
T  37406621 tatttatcattatactatcgagaacgatctggtccttattaatttaattg 37406572  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 88 - 173
Target Start/End: Original strand, 7582059 - 7582144
Alignment:
Q  88 agaacaatctagtcattattaaattaattgtctatcctctcccaataatttcttgagtacaaaagttttgtaagttgcaggactaa 173  Q
    |||||| ||||||| || |||||||||||||||| |||||  ||| | ||| ||||||| | ||||||||||||||||| ||||||    
T  7582059 agaacattctagtccttgttaaattaattgtctaacctctatcaagagttttttgagtatacaagttttgtaagttgcatgactaa 7582144  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 12302032 - 12302103
Alignment:
Q  45 tccttattaatttaa-ttgcctactatttatcattatactaacgagaacaatctagtcattattaaattaat 115  Q
    ||||||||||||||| ||||||| |||||||||||||| || | |||||||| ||||| ||||||| |||||    
T  12302032 tccttattaatttaaattgcctaatatttatcattatattatccagaacaatatagtccttattaatttaat 12302103  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 163
Target Start/End: Original strand, 12302138 - 12302253
Alignment:
Q  44 gtccttattaatttaattgcctactatttatcattatactaacgagaacaatctagtcattattaaattaattgtctatcctctcccaataatttcttga 143  Q
    ||||||| ||||||||||||||| ||||||| | ||||||  | |||||||| |  |||||||||    | ||||||| | ||| |||| ||||||||||    
T  12302138 gtccttaataatttaattgcctaatatttattaatatactctcaagaacaatatgatcattatta----acttgtctaacatctaccaagaatttcttga 12302233  T
Q  144 gtacaaaagttttgtaagtt 163  Q
    |||||  |||||||||||||    
T  12302234 gtacacgagttttgtaagtt 12302253  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 17712360 - 17712310
Alignment:
Q  123 cctctcccaataatttcttgagtacaaaagttttgtaagttgcaggactaa 173  Q
    ||||| |||| ||||||||||||| | ||||||||||||||||| ||||||    
T  17712360 cctctaccaagaatttcttgagtatataagttttgtaagttgcaagactaa 17712310  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 15543836 - 15543877
Alignment:
Q  54 atttaattgcctactatttatcattatactaacgagaacaat 95  Q
    ||||||||||||| ||||||||||||||||| | ||||||||    
T  15543836 atttaattgcctaatatttatcattatactatccagaacaat 15543877  T

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