View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_low_35 (Length: 432)
Name: NF1056_low_35
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 97 - 423
Target Start/End: Complemental strand, 4787705 - 4787379
Alignment:
| Q |
97 |
tggtactaatgatgattccaaagcccaacatatatcgttccattgatttatttatttatatatgcttacaaatttgaatagggaatctaacatttcaaaa |
196 |
Q |
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| T |
4787705 |
tggtactaatgatgattccaaagcccaacatatatcgttccattgatttatttatttatatatgcttacaaattagaatagggaatctaacatttcaaaa |
4787606 |
T |
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| Q |
197 |
caacatcaagattacccacacaaacaaaacctagaagcattaaaccgtaatttattcttgatctataaaatggaactaatgcttcgttcaattatatttg |
296 |
Q |
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| T |
4787605 |
caacatcaagattacccacacaaacaaaacctagaagcattaaaccgtaatttattcttgatctataaaatggaactaatgcttcgttcaattatatttg |
4787506 |
T |
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| Q |
297 |
actggattatatgcccattcattgattgcacacaccccatactctttattagtgttccttttgatatgcatataaccctccattccccatgacgtgcccc |
396 |
Q |
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| T |
4787505 |
actggattatatgcccattcattgattgcacacaccccatactctttattagtgttccttttgatatgcatataaccctccattccccatgacgtgcccc |
4787406 |
T |
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| Q |
397 |
attggttctttacaatccaatattctt |
423 |
Q |
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| T |
4787405 |
attggttctttacaatccaataatctt |
4787379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 287 - 423
Target Start/End: Complemental strand, 4782769 - 4782633
Alignment:
| Q |
287 |
attatatttgactggattatatgcccattcattgattgcacacaccccatactctttattagtgttccttttgatatgcatataaccctccattccccat |
386 |
Q |
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| T |
4782769 |
attatatttgactggattataagcccatgaatttatagcacacaccccatactttttatttgtgttccttttgatatgcatataaccctccattccccat |
4782670 |
T |
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| Q |
387 |
gacgtgccccattggttctttacaatccaatattctt |
423 |
Q |
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| T |
4782669 |
gacgtgccccattggttctttacaatccaataatctt |
4782633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 4788884 - 4788833
Alignment:
| Q |
30 |
atagcaaactaattactgtgaacctcagtcaccatgacagttaaaagcagtt |
81 |
Q |
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| T |
4788884 |
atagcaaactaattactgtgaacctcagtcaccatgacagttaaaagcagtt |
4788833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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