View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_low_36 (Length: 431)
Name: NF1056_low_36
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_low_36 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 88 - 361
Target Start/End: Original strand, 37742606 - 37742880
Alignment:
| Q |
88 |
gttgctgctgtggttagctttgcattgttggtgtttggaggagttggtgcattggttggaaaaactcctttgatgaggtcttgtgttagagttcttattg |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37742606 |
gttgctgctgtggttagctttgcattgttggtgtttggaggagttggtgcattggttggaaaaactcctttgatgaggtcttgtgttagagttcttattg |
37742705 |
T |
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| Q |
188 |
gaggttggatggctatggctattacttttggtttcactaaattgattggcaatactggactttgatcactttaataatgttatcgttttatttcgtgata |
287 |
Q |
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| T |
37742706 |
gaggttggatggctatggccattacttttggtttcactaaattgattggcaatactggactttgatcactttaataatgttatcgttttatttcgtgata |
37742805 |
T |
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| Q |
288 |
aatgaacttatatgataattatgc-nnnnnnnnattgaagaagtccatcaaataaatgtaaaatctaaaggatgt |
361 |
Q |
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| T |
37742806 |
aatgaacttatatgataatcatgctttttttttgttgaagaagtccatcaaataaatgtaaaatctaaaggatgt |
37742880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 88 - 291
Target Start/End: Complemental strand, 37752112 - 37751909
Alignment:
| Q |
88 |
gttgctgctgtggttagctttgcattgttggtgtttggaggagttggtgcattggttggaaaaactcctttgatgaggtcttgtgttagagttcttattg |
187 |
Q |
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| T |
37752112 |
gttgctgctgtggttagctttgcattgttggtgtttggaggagttggtgcattggttggaaaaactcctttgatgaggtcttgtgttagagttcttattg |
37752013 |
T |
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| Q |
188 |
gaggttggatggctatggctattacttttggtttcactaaattgattggcaatactggactttgatcactttaataatgttatcgttttatttcgtgata |
287 |
Q |
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| T |
37752012 |
gaggttggatggctatggccattacttttggtttcaccaaattgattggcaccactggactttgatcactttaatagtgttatcgttttatttcatgata |
37751913 |
T |
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| Q |
288 |
aatg |
291 |
Q |
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|||| |
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| T |
37751912 |
aatg |
37751909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 88 - 252
Target Start/End: Original strand, 37749676 - 37749840
Alignment:
| Q |
88 |
gttgctgctgtggttagctttgcattgttggtgtttggaggagttggtgcattggttggaaaaactcctttgatgaggtcttgtgttagagttcttattg |
187 |
Q |
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| T |
37749676 |
gttgctgctgtggttagctttgcattgttggtgtttggaggagttggtgcattggttggaaaaactcctttgatgaggtcttgtgttagagttcttattg |
37749775 |
T |
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| Q |
188 |
gaggttggatggctatggctattacttttggtttcactaaattgattggcaatactggactttga |
252 |
Q |
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| T |
37749776 |
gaggttggatggctatggccattacttttggtttcactaaattgattggcaatactggactttga |
37749840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 37733134 - 37733081
Alignment:
| Q |
165 |
gtcttgtgttagagttcttattggaggttggatggctatggctattacttttgg |
218 |
Q |
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| T |
37733134 |
gtcttgtgttagagtggtggttggaggttggatggctatggctattacctttgg |
37733081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 362
Target Start/End: Complemental strand, 29554510 - 29554478
Alignment:
| Q |
330 |
tccatcaaataaatgtaaaatctaaaggatgtt |
362 |
Q |
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| T |
29554510 |
tccatcaaataaatgtaaaatctaaacgatgtt |
29554478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 323 - 423
Target Start/End: Complemental strand, 34482518 - 34482416
Alignment:
| Q |
323 |
gaagaagtccatcaaataaatgtaaaatctaaaggatgttatgctgtcaagtcac--ttgcgatcaggttcacgaatatttgtttgctgtgtttagtatt |
420 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||| |||||||| | |||| ||| |||||||||||| || | ||||||||||||| |
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| T |
34482518 |
gaagcagtccatcaaataaatgtgaaatctaaaggatgttatgctggcaagtcacattcgcgagcagcttcacgaatattacttcgatgtgtttagtatt |
34482419 |
T |
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| Q |
421 |
atc |
423 |
Q |
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||| |
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| T |
34482418 |
atc |
34482416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 422
Target Start/End: Complemental strand, 90019 - 89930
Alignment:
| Q |
333 |
atcaaataaatgtaaaatctaaaggatgttatgctgtcaagtcacttgcgatcaggttcacgaatatttgtttgctgtgtttagtattat |
422 |
Q |
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|||||||||||||||||||||| | |||||||||| ||| || |||| | ||||||||||||||| |||| | ||||| ||| ||||| |
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| T |
90019 |
atcaaataaatgtaaaatctaaggtatgttatgctaccaacacatttgctaccaggttcacgaatatgtgttcgttgtgtctagcattat |
89930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 41249152 - 41249188
Alignment:
| Q |
332 |
catcaaataaatgtaaaatctaaaggatgttatgctg |
368 |
Q |
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| T |
41249152 |
catcaaataaatgtaaaatctaagggatgttatgctg |
41249188 |
T |
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