View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_low_38 (Length: 417)
Name: NF1056_low_38
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 25 - 253
Target Start/End: Original strand, 243749 - 243977
Alignment:
| Q |
25 |
atcatattcatgctcttctgaaccttctcatcgatcctcaactcctcatgttgtgctcataatatggtaattaaagtgtttatgctcataaattagtgaa |
124 |
Q |
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| T |
243749 |
atcatattcatgctcttctgaaccttctcatcgatcctcaactcctcatgttgtgctcataatatggtaattaaagtgtttatgctcataaattagtgaa |
243848 |
T |
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| Q |
125 |
tttgcaaagaaatatgagcaacacaatgatgccaagaagcaaagtcatgtttaatttggtttatgatagaggttgacaaaaacattccctcttaatttcc |
224 |
Q |
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| T |
243849 |
tttgcaaagaaatatgagcaacacaatgatgccaagaagcaaagtcatgtttaatttggtttatgatagaggttgacaaaaacattccctcttaatttcc |
243948 |
T |
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| Q |
225 |
aacttttttctatattccattccacacac |
253 |
Q |
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| T |
243949 |
aacttttttctatattccattccacacac |
243977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 284 - 407
Target Start/End: Original strand, 244008 - 244131
Alignment:
| Q |
284 |
gacaaatggatattggcaagaacatgaagcaaggaaaagggaacaagaaaataggcctcatcacaaaaacgtgggagagatgcaagtccataggaggagg |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
244008 |
gacaaatggatattggcaagaacatgaagcaaggaaaagggaacaagaaaataggcctcatcacaaaaacgtgggagagatgcaagtccataggaggagg |
244107 |
T |
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| Q |
384 |
acacaagagtaaatcatattcatc |
407 |
Q |
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| T |
244108 |
acacaagagtaaatcatattcatc |
244131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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