View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_low_39 (Length: 414)
Name: NF1056_low_39
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 29 - 408
Target Start/End: Complemental strand, 5911160 - 5910781
Alignment:
| Q |
29 |
attttactcatgcatttaatgccttgtagaaacgttggcagttggttgctgaattgtccttggcttgaaatccannnnnnncttcccaaagtttatattt |
128 |
Q |
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| T |
5911160 |
attttactcatgcatttaatgccttgtagaaacgttggcagttggttgttgaattgtccttggcttgaaatccatttttttcttcccaaaatttatattt |
5911061 |
T |
|
| Q |
129 |
tgtgacaatatatttttcaccagcctattatttgggcacccctaaattttatacactcgttcaataccttattttctttatatatggtgtcattgatgtg |
228 |
Q |
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| T |
5911060 |
tgtgacaatatatttttcaccagcctattatttgggcacccctaaattttatacactccttcaataccttattttctttatatatggtgtcattgatgtg |
5910961 |
T |
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| Q |
229 |
tttggttgtccaccaaacattttccatttagaaattgtagctggacactaactgagataaaagtgaagcaattccattttgttccttatgttcaatattg |
328 |
Q |
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| T |
5910960 |
tttggttgtccaccaaacattttccatttagaaattgtagctggacactaactgagataaaagtgaagcaattccattttgttccttatgtttaatattg |
5910861 |
T |
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| Q |
329 |
tctaattaaaaaacaacgaaaggtcaaatggagctacataaatggttagtcttgctttgagatttactcagaattatcta |
408 |
Q |
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| T |
5910860 |
tctaattaaaaaacaacgaaaggtcaaatggaactacataaatggttagtcttgctttgagatttactcataattatcta |
5910781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 280 - 396
Target Start/End: Complemental strand, 5915294 - 5915183
Alignment:
| Q |
280 |
ctgagataaaagtgaagcaattccattttgttccttatgttcaatattgtctaattaaaaaacaacgaaaggtcaaatggagctacataaatggttagtc |
379 |
Q |
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| T |
5915294 |
ctgaaatataagtaaagcaatttcattttgttcac-atctccaatattgtctaattaa----caaggaaaggacaaatggagctatataaatggttagtc |
5915200 |
T |
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| Q |
380 |
ttgctttgagatttact |
396 |
Q |
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| T |
5915199 |
ttgctttgagaattact |
5915183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 33065777 - 33065733
Alignment:
| Q |
211 |
tatggtgtcattgatgtgtttggttgtccaccaaacattttccat |
255 |
Q |
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| T |
33065777 |
tatggtgtcattgaggtgttttgttgttcaccaaacattttccat |
33065733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 34858190 - 34858154
Alignment:
| Q |
35 |
ctcatgcatttaatgccttgtagaaacgttggcagtt |
71 |
Q |
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| T |
34858190 |
ctcatgcatttaatgcattgtagaaactttggcagtt |
34858154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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