View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_low_4 (Length: 801)
Name: NF1056_low_4
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 240 - 772
Target Start/End: Complemental strand, 44667113 - 44666594
Alignment:
| Q |
240 |
gtagtgtattgtgaaaataaattaacattacatctaattttaaacagtctcttaaaagcagttttagattgtaatatgccacaagaatactgtatttgat |
339 |
Q |
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| T |
44667113 |
gtagtgtattgtgaaaataaattaacattacatctaattttaaacagtctcttaaaagcagttttagattgtaatat------------------ttgat |
44667032 |
T |
|
| Q |
340 |
atactggaatctggaaaatgttatgacaatattttcagcacaatgaatttcattagtcttacgaaacatgaatttgtgttcttctactagggtaattgta |
439 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44667031 |
atactggaatctggaaaatgttatgacaatattttcagcacaatgaatttcattagtcttacgaaacatgaatttgtgttcttctactagggtaattgta |
44666932 |
T |
|
| Q |
440 |
actttgataaaattctgccaatgagaattttgatcgacaggcatatggacagaacaccaacaccctcaaaagaaaaacgctacatgatactttgatggaa |
539 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44666931 |
actttgataaaattctgccaatgagaattttgatcgacaggcatatggacagaacaccaacaccctcaaaagaaaaacgctacatgatactttgatggaa |
44666832 |
T |
|
| Q |
540 |
aaataagaattaatgaaattcatgatggtgtgagtaatatgacagcacgccagcacccatattaatagcctctcaaacaacagaaatccca-------ag |
632 |
Q |
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| T |
44666831 |
aaataagaactaatgaaattcatgatgatgtgagtaatatgacagcacgccagcacccatattaatagcctctcaaacaacagaaatcctatcaaatcaa |
44666732 |
T |
|
| Q |
633 |
ctcaaaatcacaagacactatcagctaacaatggaatgttgttgcatattccaacataagtgtttgatatattgtggttatttttataattaaatgtttg |
732 |
Q |
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| T |
44666731 |
ctcaaaatcacaagacactatcagctaacaatggaatgttgttgcatattccaacataagtgtttg--atattgtggttatttttataattaaatgtttg |
44666634 |
T |
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| Q |
733 |
ttggccaagattagagttttaaatcattagtggttgtatg |
772 |
Q |
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| T |
44666633 |
ttggccaagattagagttttaaatcattagtggttgtatg |
44666594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 16 - 174
Target Start/End: Complemental strand, 44667340 - 44667182
Alignment:
| Q |
16 |
atggagatgtgattggttggttgccggaacagcttgaaactgcggaggagactttgttgagggcggctgagatgtggcggcagagggctatgcgtggtga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44667340 |
atggagatgtgattggttggttgccggaacagcttgaaactgcggaggagactttgttgagggcggctgagatgtggcggcagagggctatgcgtggtga |
44667241 |
T |
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| Q |
116 |
ccctgatgcacctcattcaagggttcttagaactcttcgtggtgaagacttttgaaatt |
174 |
Q |
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| T |
44667240 |
ccctgatgcacctcattcaagggttcttagaactcttcgtggtgaagacttttgaaatt |
44667182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 8e-54; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 8374372 - 8374528
Alignment:
| Q |
19 |
gagatgtgattggttggttgccggaacagcttgaaactgcggaggagactttgttgagggcggctgagatgtggcggcagagggctatgcgtggtgaccc |
118 |
Q |
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||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||| |
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| T |
8374372 |
gagatgtgattggttggttgccggaacagctctaaccagcggaggagactttgttgagggctgctgagatgtggcggcagaggtctatgcatggtgaccc |
8374471 |
T |
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| Q |
119 |
tgatgcacctcattcaagggttc----ttagaactcttcgtggtgaagacttttgaa |
171 |
Q |
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| T |
8374472 |
tgatgcacctcattcaagagttcttaattagaactcttcgtggtgaagacttttgaa |
8374528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 590 - 630
Target Start/End: Original strand, 8375015 - 8375055
Alignment:
| Q |
590 |
cagcacccatattaatagcctctcaaacaacagaaatccca |
630 |
Q |
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| T |
8375015 |
cagcacccatattaatagcctctcaaacaatcgaaatccca |
8375055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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