View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_low_41 (Length: 402)
Name: NF1056_low_41
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_low_41 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 119 - 402
Target Start/End: Complemental strand, 51718911 - 51718622
Alignment:
| Q |
119 |
caaaactaatttgcttttacatccacgattaatt------aatgccacatatctatgtacacgtatggtgcgttgatttcatcaatattgtttgtgtctt |
212 |
Q |
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| T |
51718911 |
caaaactaatttgcttttacatccacgattaattttaattaatgccacatatctatgtacacgtatggtgcgttgatttcatcaatattgtttgtgtctt |
51718812 |
T |
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| Q |
213 |
acttgtatagatagatattt-gttttgcatgcatgcatgggaaccgtggcagagtggccaagttgttgactccaattaattaaatcaatattgtggcgct |
311 |
Q |
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| T |
51718811 |
acttgtatagatagatattttgttttgcatgcatgcatgggaaccgtggcagagtggccaagttttttactccaattaattaaatcaatattgaggcgct |
51718712 |
T |
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| Q |
312 |
cggtgatttcaacaaaccaaaacactttgtttactcctcttctttcagaaagatcgatgtagtttggacaccaagaaaaatgggtagtaat |
402 |
Q |
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| T |
51718711 |
cgctgatttcaacaaacc-aaacactttgtttactcctcttctttcagaaagatcgatgtagtttgaacaccaagaaaaatgggtagtaat |
51718622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 51718993 - 51718942
Alignment:
| Q |
30 |
gcttatgcttattctaatgtcctcattgagatacaggcaagtcccatgttaa |
81 |
Q |
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| T |
51718993 |
gcttatgcttattctaatgtcctcattgagatacaggcaagtcccatgttaa |
51718942 |
T |
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