View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_low_42 (Length: 401)
Name: NF1056_low_42
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 29 - 390
Target Start/End: Original strand, 45297825 - 45298186
Alignment:
| Q |
29 |
agctaagtggtgaaatcccttcagagattggaacaatggtgaatttcagtatgttgcatttgggattcaacagtttctctgggaagtttccacctgagtt |
128 |
Q |
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| T |
45297825 |
agctaagtggtgaaatcccttcagagattggaacaatggtgaatttcagtatgttgcatttgggattcaacagtttctctgggaagtttccacctgagtt |
45297924 |
T |
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| Q |
129 |
gggaagtattccacttatggtcttgaacttgaccagaaacaacttttcaggtgaaattcctcaggaaattggaaacttaaaatgcttgcaaaatcttgat |
228 |
Q |
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| T |
45297925 |
gggaagtattccacttatggtcttgaacttgactagaaacaacttttcaggtgaaattcctcaggaaattggaaacttaaaatgcttgcaaaatcttgat |
45298024 |
T |
|
| Q |
229 |
ctgtctcacaacaatttctcaggaaattttcctacaagtttgaacaaagtggctgagcttaacaagttcaacatctcctataatcccttcatatatggtg |
328 |
Q |
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| T |
45298025 |
ctgtctcacaacaatttctcaggaaattttcctacaagtttgaacaaagtggctgagcttaacaagttcaacatctcctataatcccttcatatatggtg |
45298124 |
T |
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| Q |
329 |
aggtttcatcaagtggacaatttgttacttttgagaaagattcatatttaggcgaccctttg |
390 |
Q |
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| T |
45298125 |
aggtttcatcaagtggacaatttgttacttttgagaaagattcatatttaggcgaccctttg |
45298186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 139 - 314
Target Start/End: Complemental strand, 12786579 - 12786404
Alignment:
| Q |
139 |
ccacttatggtcttgaacttgaccagaaacaacttttcaggtgaaattcctcaggaaattggaaacttaaaatgcttgcaaaatcttgatctgtctcaca |
238 |
Q |
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| T |
12786579 |
ccacttatagtgttgaatatgactagaaacaagttttcaggtgaaattcctagggaaattggtaacatgaagtgtatgcagaatcttgatttgtcttgga |
12786480 |
T |
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| Q |
239 |
acaatttctcaggaaattttcctacaagtttgaacaaagtggctgagcttaacaagttcaacatctcctataatcc |
314 |
Q |
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| T |
12786479 |
acaatttctcaggtacatttccgacaagtttgattaatttggatgagcttagcaggttcaacatctcatataatcc |
12786404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 18210551 - 18210614
Alignment:
| Q |
179 |
gtgaaattcctcaggaaattggaaacttaaaatgcttgcaaaatcttgatctgtctcacaacaa |
242 |
Q |
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| T |
18210551 |
gtgagattcctaatgaaattgtaaactaaaaatgcttgcagaatcttgatttgtctcacaacaa |
18210614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 12786684 - 12786629
Alignment:
| Q |
34 |
agtggtgaaatcccttcagagattggaacaatggtgaatttcagtatgttgcattt |
89 |
Q |
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| T |
12786684 |
agtggtgaaattccttcagaaattggaaccatgttaaatttcagtatgttacattt |
12786629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 34266395 - 34266332
Alignment:
| Q |
179 |
gtgaaattcctcaggaaattggaaacttaaaatgcttgcaaaatcttgatctgtctcacaacaa |
242 |
Q |
| |
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|||| |||||| | ||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
34266395 |
gtgagattcctaatgaaattggaaactaaaaatgcttgcaaaatcttgatttgtctcacaacaa |
34266332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 37898229 - 37898172
Alignment:
| Q |
179 |
gtgaaattcctcaggaaattggaaacttaaaatgcttgcaaaatcttgatctgtctca |
236 |
Q |
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| T |
37898229 |
gtgagattcctaatgaaattgtaaactaaaaatgcttgcagaatcttgatttgtctca |
37898172 |
T |
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