View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_low_43 (Length: 393)
Name: NF1056_low_43
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 4 - 327
Target Start/End: Complemental strand, 55420206 - 55419878
Alignment:
| Q |
4 |
atctccaaaaatatcaaagtggttctatctcagcatcatctatttctcttagtgtatgtttgtttttcttattctacaatttagtctttcccgtctattt |
103 |
Q |
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| T |
55420206 |
atctccaaacacatcaaagtggttctatctcagcatcatctatttctcttagtgtatgtttgtttttcttattctacaatttagtctttcccgtctattt |
55420107 |
T |
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| Q |
104 |
ctccccaaggttgctcctttttgctgagtttgtcgtcttttctgctaatttataccatgaatttgctctgaatctatttttcactttgattaggggtggc |
203 |
Q |
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| T |
55420106 |
cttcccaaggttgctcctttttgctgagtttgtcgtcttttctgctaatttataccatgaatttgctctgaatctatttttcactttgattaggggtggc |
55420007 |
T |
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| Q |
204 |
aaagcaagttgaacctgtaagctcaacccacctaactcgcggggtcaatagatcaacctgctttatatttaacaa-----nnnnnnnnctatttaatttg |
298 |
Q |
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| T |
55420006 |
aaagcaagttgaacctgtaagctcaacccacctaactcgcggggtcaatagatcaacctgctttatatttaacaatttttttttttttctatttaatttg |
55419907 |
T |
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| Q |
299 |
atactttttgttataggtgcttgattatt |
327 |
Q |
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|||| |||||||||||||||||||||||| |
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| T |
55419906 |
atacattttgttataggtgcttgattatt |
55419878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 321 - 388
Target Start/End: Original strand, 480120 - 480187
Alignment:
| Q |
321 |
gattattctcgttagtataatgataaatagtaggcaattaaattaataaggactggatcgttctagat |
388 |
Q |
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| T |
480120 |
gattgttctcgttagtataatgataaatattaggcaattaaattaataaggactggatcgttctagat |
480187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 338 - 384
Target Start/End: Original strand, 37406555 - 37406601
Alignment:
| Q |
338 |
taatgataaatagtaggcaattaaattaataaggactggatcgttct |
384 |
Q |
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|||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
37406555 |
taatgataaatattaggcaattaaattaataaggaccagatcgttct |
37406601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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