View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1056_low_50 (Length: 358)

Name: NF1056_low_50
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1056_low_50
NF1056_low_50
[»] chr1 (3 HSPs)
chr1 (174-351)||(18185307-18185479)
chr1 (275-351)||(38833320-38833396)
chr1 (30-67)||(18185272-18185309)
[»] chr5 (1 HSPs)
chr5 (275-351)||(39180669-39180745)
[»] chr3 (2 HSPs)
chr3 (275-351)||(20633222-20633298)
chr3 (275-351)||(48823253-48823329)
[»] chr2 (1 HSPs)
chr2 (275-351)||(16237338-16237414)
[»] chr7 (2 HSPs)
chr7 (275-351)||(28575030-28575106)
chr7 (281-343)||(38658303-38658365)
[»] chr6 (1 HSPs)
chr6 (279-351)||(18568778-18568849)


Alignment Details
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 174 - 351
Target Start/End: Original strand, 18185307 - 18185479
Alignment:
Q  174 gagattgcgtattagcgtgtttgcattgcgcacgtacatatgacttggaattggataataacatggtaagttataatccctttgttagtaattaccttat 273  Q
    |||||||||||  ||||||||||||||||||||    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18185307 gagattgcgtaggagcgtgtttgcattgcgcac----atatgacttggaattggataataacatcgtaagttataatccctttgttagtaattaccttat 18185402  T
Q  274 gggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctgtggtg 351  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18185403 gggg-agttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctttggtg 18185479  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 275 - 351
Target Start/End: Complemental strand, 38833396 - 38833320
Alignment:
Q  275 ggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctgtggtg 351  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  38833396 ggggagttttggaaggtctccggtgtgcaaaacgtatggggttcactgcagtagaattaaatgtggattctttggtg 38833320  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 18185272 - 18185309
Alignment:
Q  30 cctatgagggaaagaaatttttttgcaacccctatgag 67  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18185272 cctatgagggaaagaaatttttttgcaacccctatgag 18185309  T

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Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 275 - 351
Target Start/End: Original strand, 39180669 - 39180745
Alignment:
Q  275 ggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctgtggtg 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39180669 ggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctttggtg 39180745  T

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Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 275 - 351
Target Start/End: Complemental strand, 20633298 - 20633222
Alignment:
Q  275 ggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctgtggtg 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  20633298 ggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctttggtg 20633222  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 275 - 351
Target Start/End: Complemental strand, 48823329 - 48823253
Alignment:
Q  275 ggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctgtggtg 351  Q
    |||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||| |||||||| |||||    
T  48823329 ggggagttttggaaggtctccggtgtgcaaaacgtacagggttcactgcagtagaattaaatatggattctttggtg 48823253  T

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Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 275 - 351
Target Start/End: Original strand, 16237338 - 16237414
Alignment:
Q  275 ggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctgtggtg 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16237338 ggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctggtg 16237414  T

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Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 275 - 351
Target Start/End: Complemental strand, 28575106 - 28575030
Alignment:
Q  275 ggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctgtggtg 351  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28575106 ggggagttttggaaggtctccgatgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctggtg 28575030  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 343
Target Start/End: Complemental strand, 38658365 - 38658303
Alignment:
Q  281 ttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggatt 343  Q
    |||||||||||||||||||||||||||| |||||||| |  ||||| |||||| | |||||||    
T  38658365 ttttggaaggtctccggtgtgcgaaacgaatggggtttatagcagttgaattacaagtggatt 38658303  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 279 - 351
Target Start/End: Original strand, 18568778 - 18568849
Alignment:
Q  279 agttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctgtggtg 351  Q
    |||||||||||||||| | ||||| |||| ||||||||||||||||||| | ||||||||||||||| |||||    
T  18568778 agttttggaaggtctc-gatgtgcaaaacatatggggttcactgcagtatacttaaatgtggattctttggtg 18568849  T

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