View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_low_52 (Length: 341)
Name: NF1056_low_52
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 13 - 313
Target Start/End: Complemental strand, 42275896 - 42275597
Alignment:
| Q |
13 |
aatattgtccaaattggcaaaggcaatagaaagcaagtacaataaagcgtgtggtccttgctttaagacaatagattgtcacagatcttcttcaaacttc |
112 |
Q |
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| T |
42275896 |
aatattgtccaaattggcaaaggcaatagaaagcaagtacaataaagcgtgtggtccttgctttaagacaatagattgtcacagatcttcttcaaacttc |
42275797 |
T |
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| Q |
113 |
aaagccattggaacaacctgcacgtaatgtagtatcatattttgatgctttccatattctcttctcttcctaccgcaacttcatttaaagaaacctactc |
212 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42275796 |
aaagccattgcaacaacctgcacgtaatgtagtatcatattttgatgctttccatattctcttctcttcctaccgcaactccatttaaagaaacctactc |
42275697 |
T |
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| Q |
213 |
ttagctcaaaaattgcaccaatttgtacaagtctaagccaaaacaacttgatggcaaaatgcacaaagtctctagttatgttcccaatcctcttgcaaac |
312 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42275696 |
ttagctcaaaaattgcaccaa-ttgtacaagtctaagccaaaacaacttgatggcaaaatgcacaaagtctctagttatgttcccaatcctcttgcaaac |
42275598 |
T |
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