View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1056_low_53 (Length: 341)

Name: NF1056_low_53
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1056_low_53
NF1056_low_53
[»] chr6 (14 HSPs)
chr6 (30-341)||(14024998-14025309)
chr6 (30-227)||(13932179-13932376)
chr6 (38-253)||(13911628-13911843)
chr6 (30-253)||(13893041-13893264)
chr6 (32-239)||(13473036-13473243)
chr6 (39-231)||(14084494-14084686)
chr6 (32-335)||(14110199-14110502)
chr6 (38-242)||(13875345-13875549)
chr6 (37-239)||(13862874-13863076)
chr6 (30-242)||(14014966-14015178)
chr6 (152-241)||(14047209-14047298)
chr6 (30-95)||(14047313-14047378)
chr6 (295-335)||(13932086-13932126)
chr6 (303-335)||(14014873-14014905)


Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 30 - 341
Target Start/End: Complemental strand, 14025309 - 14024998
Alignment:
Q  30 aaggacacatcccttattggattggaagtgaattaaaagagttgcaagttttaagcttacaaagaaatcaattctttggaagtttaccattggaactctg 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  14025309 aaggacacatcccttattggattggaagtgaattaaaagagttgcaagttttaagcttacaaagaaatcaattctatggaagtttaccattggaactctg 14025210  T
Q  130 ccatctacaaagcattcaactttttgatctctcattaaacaatctatctggacgaattcccaaatgcattaaaaatttcacttcaatgactcaaaaagct 229  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||    
T  14025209 ccatctacaaaagattcaactttttgatctctcattaaacaatctatctgggcgaattcctaaatgcattaaaaatttcacttcaatgactcaaaaatct 14025110  T
Q  230 tcatcacaaggttatacagatcatcaatatattataagtcgaggatacgagggttatcaagaagaatatgaactgaatacattcttgacatggaaaggtg 329  Q
    |||||||||||||||||| |||||||||||  |||||  |||||||    |||||||  ||||||||||||||||||| |||||||||||||||||||||    
T  14025109 tcatcacaaggttatacacatcatcaatattatataacccgaggatcttcgggttatggagaagaatatgaactgaatgcattcttgacatggaaaggtg 14025010  T
Q  330 tagaacgagtgt 341  Q
    |||||| |||||    
T  14025009 tagaacaagtgt 14024998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 30 - 227
Target Start/End: Complemental strand, 13932376 - 13932179
Alignment:
Q  30 aaggacacatcccttattggattggaagtgaattaaaagagttgcaagttttaagcttacaaagaaatcaattctttggaagtttaccattggaactctg 129  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || | ||| | |||||||||||||||||||||||||||||    
T  13932376 aaggacacatcccttattggattggaagcgaattaaaagagttgcaagttttaagcttaaaagggaattacttctttggaagtttaccattggaactctg 13932277  T
Q  130 ccatctacaaagcattcaactttttgatctctcattaaacaatctatctggacgaattcccaaatgcattaaaaatttcacttcaatgactcaaaaag 227  Q
    ||||||||||  ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13932276 ccatctacaattcattcaattttttgatctctcattaaacagtctatctggacgaattcccaaatgcattaaaaatctcacttcaatgactcaaaaag 13932179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 38 - 253
Target Start/End: Complemental strand, 13911843 - 13911628
Alignment:
Q  38 atcccttattggattggaagtgaattaaaagagttgcaagttttaagcttacaaagaaatcaattctttggaagtttaccattggaactctgccatctac 137  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| |||||||||| ||||||||| ||||||||||||||||    
T  13911843 atcccttattggattggaagggaattaaaagagttgcaagttttaagcttacagaggaatcacttctttggaaatttaccattcgaactctgccatctac 13911744  T
Q  138 aaagcattcaactttttgatctctcattaaacaatctatctggacgaattcccaaatgcattaaaaatttcacttcaatgactcaaaaagcttcatcaca 237  Q
    ||| ||||||||| |||||||||||||| |||||||||||  |||| ||||| ||||||||||||||||||||||||||||||||||||| ||| |||||    
T  13911743 aaaacattcaactctttgatctctcattgaacaatctatccagacggattccaaaatgcattaaaaatttcacttcaatgactcaaaaaggttcctcaca 13911644  T
Q  238 aggttatacagatcat 253  Q
    ||||| ||||||||||    
T  13911643 aggttttacagatcat 13911628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 30 - 253
Target Start/End: Original strand, 13893041 - 13893264
Alignment:
Q  30 aaggacacatcccttattggattggaagtgaattaaaagagttgcaagttttaagcttacaaagaaatcaattctttggaagtttaccattggaactctg 129  Q
    |||||| | |||||||||||||||||||  ||||||||||| ||||||||||||||||| |||| ||||| ||||||||||||||||||||  |||| ||    
T  13893041 aaggacccgtcccttattggattggaagcaaattaaaagagctgcaagttttaagcttaaaaagtaatcacttctttggaagtttaccattcaaactttg 13893140  T
Q  130 ccatctacaaagcattcaactttttgatctctcattaaacaatctatctggacgaattcccaaatgcattaaaaatttcacttcaatgactcaaaaagct 229  Q
      ||||||||| |||||| || |||||| ||||||| ||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||    
T  13893141 ttatctacaaaacattcagctctttgatttctcattgaacaatctatctggagggattccaaaatgcattaaaaatttcacttcaatgactcaaaaagct 13893240  T
Q  230 tcatcacaaggttatacagatcat 253  Q
    ||||||||||||| ||||||||||    
T  13893241 tcatcacaaggttttacagatcat 13893264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 32 - 239
Target Start/End: Original strand, 13473036 - 13473243
Alignment:
Q  32 ggacacatcccttattggattggaagtgaattaaaagagttgcaagttttaagcttacaaagaaatcaattctttggaagtttaccattggaactctgcc 131  Q
    |||| ||||||||||||||||||||| |||||||||||| | |||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||      
T  13473036 ggactcatcccttattggattggaagcgaattaaaagagctccaagttttaagcttacaaaggaatcacttctttggaagtttaccattcgaactttgtt 13473135  T
Q  132 atctacaaagcattcaactttttgatctctcattaaacaatctatctggacgaattcccaaatgcattaaaaatttcacttcaatgactcaaaaagcttc 231  Q
    ||||||||| ||||||||| |||||||||||||| ||||||||||||||||  ||||| |||||||||||||||||||| |||||||||||||||| ||     
T  13473136 atctacaaaacattcaactctttgatctctcattcaacaatctatctggacagattccaaaatgcattaaaaatttcacctcaatgactcaaaaagattt 13473235  T
Q  232 atcacaag 239  Q
    ||||||||    
T  13473236 atcacaag 13473243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 39 - 231
Target Start/End: Complemental strand, 14084686 - 14084494
Alignment:
Q  39 tcccttattggattggaagtgaattaaaagagttgcaagttttaagcttacaaagaaatcaattctttggaagtttaccattggaactctgccatctaca 138  Q
    ||||||||||||||||||| ||||| |||||||||||| |||||||||||||||| ||||| |||||||||||||| ||||| ||||| |||  ||| ||    
T  14084686 tcccttattggattggaagcgaattgaaagagttgcaatttttaagcttacaaaggaatcacttctttggaagtttcccattcgaactttgctttcttca 14084587  T
Q  139 aagcattcaactttttgatctctcattaaacaatctatctggacgaattcccaaatgcattaaaaatttcacttcaatgactcaaaaagcttc 231  Q
    ||| |||||||| |||||||||||||| ||| ||||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||||||||    
T  14084586 aagaattcaactctttgatctctcattgaactatctatctggacggattcccaaatgcattaaaatttttacttcaatgactgaaaaagcttc 14084494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 32 - 335
Target Start/End: Complemental strand, 14110502 - 14110199
Alignment:
Q  32 ggacacatcccttattggattggaagtgaattaaaagagttgcaagttttaagcttacaaagaaatcaattctttggaagtttaccattggaactctgcc 131  Q
    |||| ||||||||| |||||||||||  ||||||||||  ||||| |||||||||||| ||| ||||| |||||||||||||||||||| ||||| ||||    
T  14110502 ggactcatcccttactggattggaagcaaattaaaagatctgcaaattttaagcttacgaaggaatcatttctttggaagtttaccatttgaactttgcc 14110403  T
Q  132 atctacaaagcattcaactttttgatctctcattaaacaatctatctggacgaattcccaaatgcattaaaaatttcacttcaatgactcaaaaagcttc 231  Q
    || ||||||  |||||||| |||||||||||||| |||||||| |||||    ||||| ||||||||||||||||||||||||||||||||||||| |||    
T  14110402 atttacaaaatattcaactctttgatctctcattgaacaatctctctgggaagattccgaaatgcattaaaaatttcacttcaatgactcaaaaagattc 14110303  T
Q  232 atcacaaggttatacagatcatcaatatattataagtcgaggatacgagggttatcaagaagaatatgaactgaatacattcttgacatggaaaggtgta 331  Q
    | || | |||| ||  | ||||   |||||||| || | |||||    | ||| ||||||||| |||||| ||| | |||||||||||||||||||||||    
T  14110302 accagatggttttatcggtcattcttatattatcagccaaggatctacgagttttcaagaagactatgaattgagtgcattcttgacatggaaaggtgta 14110203  T
Q  332 gaac 335  Q
    ||||    
T  14110202 gaac 14110199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 38 - 242
Target Start/End: Original strand, 13875345 - 13875549
Alignment:
Q  38 atcccttattggattggaagtgaattaaaagagttgcaagttttaagcttacaaagaaatcaattctttggaagtttaccattggaactctgccatctac 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||  | ||||| ||| | ||||    
T  13875345 atcccttattggattggaagtgaattaaaagagttgcaagttttaagcttacaaaggaatcacttctttggaagtttccccctcgaactttgctacctac 13875444  T
Q  138 aaagcattcaactttttgatctctcattaaacaatctatctggacgaattcccaaatgcattaaaaatttcacttcaatgactcaaaaagcttcatcaca 237  Q
    ||| ||| ||||| |||||| | ||||| ||||||||||||||| | ||||||||||||||| |||||||||||||||||| |   |||| |||||||||    
T  13875445 aaaacatccaactctttgatgtatcattgaacaatctatctggagggattcccaaatgcattcaaaatttcacttcaatgagtgttaaaggttcatcaca 13875544  T
Q  238 aggtt 242  Q
    |||||    
T  13875545 aggtt 13875549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 37 - 239
Target Start/End: Original strand, 13862874 - 13863076
Alignment:
Q  37 catcccttattggattggaagtgaattaaaagagttgcaagttttaagcttacaaagaaatcaattctttggaagtttaccattggaactctgccatcta 136  Q
    ||||||||||||||||||||| || ||||||||| |||| |||||||||||||| || ||||| ||||| |||||||||||| | ||||| ||| ||||     
T  13862874 catcccttattggattggaagcgagttaaaagagctgcaggttttaagcttacataggaatcatttcttcggaagtttaccagtagaactttgctatctt 13862973  T
Q  137 caaagcattcaactttttgatctctcattaaacaatctatctggacgaattcccaaatgcattaaaaatttcacttcaatgactcaaaaagcttcatcac 236  Q
    | ||  |||||||| ||||||||||||||||||||||| ||||||| | |||| |||||||||||||||||||||||||||||||| ||||||||| |||    
T  13862974 cgaaatattcaactctttgatctctcattaaacaatctttctggacaagttcctaaatgcattaaaaatttcacttcaatgactcagaaagcttcaacac 13863073  T
Q  237 aag 239  Q
    |||    
T  13863074 aag 13863076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 30 - 242
Target Start/End: Complemental strand, 14015178 - 14014966
Alignment:
Q  30 aaggacacatcccttattggattggaagtgaattaaaagagttgcaagttttaagcttacaaagaaatcaattctttggaagtttaccattggaactctg 129  Q
    |||||| |||||||||||||||||||| ||||||||||  ||||||||||||||| |||||||  ||| | |||||||||||||||||||| ||| | ||    
T  14015178 aaggactcatcccttattggattggaattgaattaaaacggttgcaagttttaagtttacaaaagaataacttctttggaagtttaccatttgaaatttg 14015079  T
Q  130 ccatctacaaagcattcaactttttgatctctcattaaacaatctatctggacgaattcccaaatgcattaaaaatttcacttcaatgactcaaaaagct 229  Q
      || |||||| |||| |||| |||||| | ||||| ||||||||||| ||||| |||||| |||| ||||||||||||||||||||||||||||||| |    
T  14015078 ttatatacaaaacattaaactctttgatgtatcattgaacaatctatccggacggattcccgaatgtattaaaaatttcacttcaatgactcaaaaaggt 14014979  T
Q  230 tcatcacaaggtt 242  Q
    ||  |||||||||    
T  14014978 tctgcacaaggtt 14014966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 14047298 - 14047209
Alignment:
Q  152 tttgatctctcattaaacaatctatctggacgaattcccaaatgcattaaaaatttcacttcaatgactcaaaaagcttcatcacaaggt 241  Q
    |||||||||||||| || |||||||||||||  ||||||||||||||  ||||||| || |||||||||||||| |||||||| ||||||    
T  14047298 tttgatctctcattgaataatctatctggacatattcccaaatgcatacaaaatttaacatcaatgactcaaaaggcttcatctcaaggt 14047209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 14047378 - 14047313
Alignment:
Q  30 aaggacacatcccttattggattggaagtgaattaaaagagttgcaagttttaagcttacaaagaa 95  Q
    |||||| |||||||||||||||||||||||||||||||||  | ||| ||||||||||||||||||    
T  14047378 aaggactcatcccttattggattggaagtgaattaaaagatctacaaattttaagcttacaaagaa 14047313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 335
Target Start/End: Complemental strand, 13932126 - 13932086
Alignment:
Q  295 atatgaactgaatacattcttgacatggaaaggtgtagaac 335  Q
    ||||||| ||||| |||| ||||||||||||||||||||||    
T  13932126 atatgaattgaatgcattgttgacatggaaaggtgtagaac 13932086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 335
Target Start/End: Complemental strand, 14014905 - 14014873
Alignment:
Q  303 tgaatacattcttgacatggaaaggtgtagaac 335  Q
    ||||| |||||||||||||||||||||||||||    
T  14014905 tgaatgcattcttgacatggaaaggtgtagaac 14014873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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