View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_low_55 (Length: 336)
Name: NF1056_low_55
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_low_55 |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 30 - 322
Target Start/End: Complemental strand, 1863552 - 1863260
Alignment:
| Q |
30 |
ggtaaacctttgataacttatcaagtcttaatattaacccaactatgaaaagtcatgtgctcctcgaacctagctactgattcgaaatattgttggtaca |
129 |
Q |
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| T |
1863552 |
ggtaaacctttgataacttatcaagtcttaatattaacccaactatgaaaagtcatgtgctcctcgaacctagctactgattcgaaatattgttgttaca |
1863453 |
T |
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| Q |
130 |
tagccacactatagatatgttacattggagaatttgaataaactgacattgttattctatttagtgcnnnnnnnnnttatgaaataacatatgtagcgga |
229 |
Q |
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| T |
1863452 |
tagccacactatagatatgttacattggagaatttgaataaactgccattgttattctatttagtgcaaaaaaaaattatgaaataacatatgtagcgga |
1863353 |
T |
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| Q |
230 |
gttatagcagtgttgagtagtggaatttgaccaaaccactatttttcgcgattcctaattgacaatactgagctgagtaataacgaaaacctc |
322 |
Q |
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| T |
1863352 |
gttatagcagtgttgagtagtggaatttgaccaaaccactatttttcgcgattcctaattgacaatactgagctgagtaataacgaaaacctc |
1863260 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 273
Target Start/End: Complemental strand, 28976368 - 28976327
Alignment:
| Q |
232 |
tatagcagtgttgagtagtggaatttgaccaaaccactattt |
273 |
Q |
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| T |
28976368 |
tatagcattgttgtgtagtggaatttgaacaaaccactattt |
28976327 |
T |
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