View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1056_low_58 (Length: 321)

Name: NF1056_low_58
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1056_low_58
NF1056_low_58
[»] chr8 (6 HSPs)
chr8 (100-321)||(5284223-5284444)
chr8 (100-321)||(5291718-5291939)
chr8 (100-321)||(5312371-5312592)
chr8 (100-321)||(14951038-14951259)
chr8 (100-320)||(5305159-5305379)
chr8 (100-321)||(15124408-15124629)
[»] chr6 (7 HSPs)
chr6 (100-321)||(31527720-31527941)
chr6 (141-223)||(21177706-21177788)
chr6 (136-231)||(21263930-21264026)
chr6 (136-231)||(21297785-21297880)
chr6 (136-194)||(21109152-21109210)
chr6 (100-200)||(21260091-21260195)
chr6 (136-175)||(33722786-33722825)
[»] scaffold0719 (1 HSPs)
scaffold0719 (100-150)||(5899-5949)
[»] scaffold0272 (2 HSPs)
scaffold0272 (100-150)||(19972-20022)
scaffold0272 (182-231)||(19913-19962)
[»] scaffold0016 (1 HSPs)
scaffold0016 (182-231)||(39775-39824)


Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 100 - 321
Target Start/End: Complemental strand, 5284444 - 5284223
Alignment:
Q  100 gttctttggtctataattagaactttcttaaaagaaaacatattaatagcattttatgcattaataagaactatttctgctgtagtttcacctcttatac 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5284444 gttctttggtctataattagaactttcttaaaagaaaacatattaatagcattttatgcattaatcagaactatttctgctgtagtttcacctcttatac 5284345  T
Q  200 tttatgcttttgttaactactcaaatagaactgaggcagatctcaaacaaggtctttccatagttggtattttaattctaaccaaattagttgattctct 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5284344 tttatgcttttgttaactactcaaatagaactgaggcagatctcaaacaaggtctttccatagttggtattttaattctaaccaaattagttgattctct 5284245  T
Q  300 gtctcaaagacattggtttttt 321  Q
    ||||||||||||||||||||||    
T  5284244 gtctcaaagacattggtttttt 5284223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 100 - 321
Target Start/End: Complemental strand, 5291939 - 5291718
Alignment:
Q  100 gttctttggtctataattagaactttcttaaaagaaaacatattaatagcattttatgcattaataagaactatttctgctgtagtttcacctcttatac 199  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| | || |||||||||||||||||    
T  5291939 gttctttggtctatagttagaactttcttgaaagaaaacatattaatagcattttatgcattaataagaactgtttcggttgcagtttcacctcttatac 5291840  T
Q  200 tttatgcttttgttaactactcaaatagaactgaggcagatctcaaacaaggtctttccatagttggtattttaattctaaccaaattagttgattctct 299  Q
    | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |  |||| ||| |    
T  5291839 tctatgcttttgttaactactcaaatagaaccgaggcagatctcaaacaaggtctttccatagttggtattttgattctcaccaaagtttttgagtcttt 5291740  T
Q  300 gtctcaaagacattggtttttt 321  Q
     |||||||| ||||||||||||    
T  5291739 atctcaaaggcattggtttttt 5291718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 100 - 321
Target Start/End: Original strand, 5312371 - 5312592
Alignment:
Q  100 gttctttggtctataattagaactttcttaaaagaaaacatattaatagcattttatgcattaataagaactatttctgctgtagtttcacctcttatac 199  Q
    |||||||||||| | |||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||    
T  5312371 gttctttggtctgttattagaacttacttaaaagaaaacatagtaatagcattttatgcattaatcagaactatttctgttgtagtttcacctctaatac 5312470  T
Q  200 tttatgcttttgttaactactcaaatagaactgaggcagatctcaaacaaggtctttccatagttggtattttaattctaaccaaattagttgattctct 299  Q
    | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| || | ||||| |||||||| || || |||||    
T  5312471 tctatgcttttgttaactacgcaaatagaactgaggcagatctcaaacaaggtctttcaatagttggttttctgattctcaccaaattggtcgagtctct 5312570  T
Q  300 gtctcaaagacattggtttttt 321  Q
    ||||||| ||||||||||||||    
T  5312571 gtctcaacgacattggtttttt 5312592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 100 - 321
Target Start/End: Complemental strand, 14951259 - 14951038
Alignment:
Q  100 gttctttggtctataattagaactttcttaaaagaaaacatattaatagcattttatgcattaataagaactatttctgctgtagtttcacctcttatac 199  Q
    ||||||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||||||| ||||||||  ||| ||||||||||||||| ||||    
T  14951259 gttctttggtctatagttagatcttacctaaaagaaaacatattaatagcattttatgcattaatcagaactatagctgttgtagtttcacctctgatac 14951160  T
Q  200 tttatgcttttgttaactactcaaatagaactgaggcagatctcaaacaaggtctttccatagttggtattttaattctaaccaaattagttgattctct 299  Q
    | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||  || | || ||| |  |||| |||||    
T  14951159 tctatgcttttgttaactactcaaatagaactgaggaagatctcaaacaaggtctttccatagttggttttttggttgtcactaaagtctttgagtctct 14951060  T
Q  300 gtctcaaagacattggtttttt 321  Q
    ||||||||||||||||||||||    
T  14951059 gtctcaaagacattggtttttt 14951038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 100 - 320
Target Start/End: Original strand, 5305159 - 5305379
Alignment:
Q  100 gttctttggtctataattagaactttcttaaaagaaaacatattaatagcattttatgcattaataagaactatttctgctgtagtttcacctcttatac 199  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||   |||||||||||||||    
T  5305159 gttctttggtctatagtaagaactttcttaaaagaaaacatattaatagcattttatgcattaatcagaactatttcggttgccatttcacctcttatac 5305258  T
Q  200 tttatgcttttgttaactactcaaatagaactgaggcagatctcaaacaaggtctttccatagttggtattttaattctaaccaaattagttgattctct 299  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || || | ||||| | |||| |  | || ||| |    
T  5305259 tctatgcttttgttaactactcaaatagaactgaggcagatctcaaacaaggtcttaccatagtttgttttctgattctcaacaaagttttggagtcttt 5305358  T
Q  300 gtctcaaagacattggttttt 320  Q
    |||||| ||||||||||||||    
T  5305359 gtctcagagacattggttttt 5305379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 100 - 321
Target Start/End: Original strand, 15124408 - 15124629
Alignment:
Q  100 gttctttggtctataattagaactttcttaaaagaaaacatattaatagcattttatgcattaataagaactatttctgctgtagtttcacctcttatac 199  Q
    ||||||||||||||| ||||| | | | ||||||||||||||||||||||||||||||||||||| ||||||||  ||| ||||||||||||||| ||||    
T  15124408 gttctttggtctatagttagatcatacctaaaagaaaacatattaatagcattttatgcattaatcagaactatagctgttgtagtttcacctctaatac 15124507  T
Q  200 tttatgcttttgttaactactcaaatagaactgaggcagatctcaaacaaggtctttccatagttggtattttaattctaaccaaattagttgattctct 299  Q
    | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||  || | || ||| |  |||| ||  |    
T  15124508 tctatgcttttgttaactactcaaatagaactgaggaagatctcaaacaaggtctttccatagttggttttttggttgtcactaaagtctttgagtcggt 15124607  T
Q  300 gtctcaaagacattggtttttt 321  Q
     |||||||||||||||||||||    
T  15124608 atctcaaagacattggtttttt 15124629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 5e-53; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 100 - 321
Target Start/End: Complemental strand, 31527941 - 31527720
Alignment:
Q  100 gttctttggtctataattagaactttcttaaaagaaaacatattaatagcattttatgcattaataagaactatttctgctgtagtttcacctcttatac 199  Q
    ||||||||||||||| ||| ||||| |||| |||||||||||||||||||||| |||||| || | ||||||||||||| |||||||| |||||| || |    
T  31527941 gttctttggtctatagttaaaacttacttacaagaaaacatattaatagcattctatgcactactcagaactatttctgttgtagttttacctctaattc 31527842  T
Q  200 tttatgcttttgttaactactcaaatagaactgaggcagatctcaaacaaggtctttccatagttggtattttaattctaaccaaattagttgattctct 299  Q
    | |||||||||||||||||||||| |||||| |||| | |||||| | |||||||||||||||||||| || | ||||| ||||||||||| || ||| |    
T  31527841 tctatgcttttgttaactactcaagtagaaccgagggaaatctcagagaaggtctttccatagttggttttctgattctcaccaaattagtcgagtcttt 31527742  T
Q  300 gtctcaaagacattggtttttt 321  Q
     || || |||||||||||||||    
T  31527741 ttcccagagacattggtttttt 31527720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 141 - 223
Target Start/End: Complemental strand, 21177788 - 21177706
Alignment:
Q  141 attaatagcattttatgcattaataagaactatttctgctgtagtttcacctcttatactttatgcttttgttaactactcaa 223  Q
    |||||| ||||||||||||||||| |||||||| |||| | ||||||||||||| ||||| |||||| |||||||||||||||    
T  21177788 attaatggcattttatgcattaatcagaactatatctgttttagtttcacctctaatactctatgctattgttaactactcaa 21177706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 231
Target Start/End: Complemental strand, 21264026 - 21263930
Alignment:
Q  136 aacatattaatagcattttatgcattaataagaactatttctgctgtagtttcacctcttatactttatgcttttgttaact-actcaaatagaact 231  Q
    |||||||||||||||||||||| |||||| ||||||||||||  ||||||||||||||| ||  | ||| || ||||| ||| ||||||||||||||    
T  21264026 aacatattaatagcattttatgaattaatcagaactatttctattgtagtttcacctctaatcttctattctattgttgactaactcaaatagaact 21263930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 231
Target Start/End: Complemental strand, 21297880 - 21297785
Alignment:
Q  136 aacatattaatagcattttatgcattaataagaactatttctgctgtagtttcacctcttatactttatgcttttgttaactactcaaatagaact 231  Q
    ||||||||||||||| ||||||||| ||| |||||||| |||| ||||||||||| ||| ||| | ||  || ||||||| |||||||||||||||    
T  21297880 aacatattaatagcagtttatgcataaatcagaactatctctgttgtagtttcacatctaatattatactctattgttaattactcaaatagaact 21297785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 21109210 - 21109152
Alignment:
Q  136 aacatattaatagcattttatgcattaataagaactatttctgctgtagtttcacctct 194  Q
    ||||||||||||||||||||||||||||| | || || |||||||||| ||||||||||    
T  21109210 aacatattaatagcattttatgcattaatcataattacttctgctgtaatttcacctct 21109152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 200
Target Start/End: Complemental strand, 21260195 - 21260091
Alignment:
Q  100 gttctttggtctataattagaactttcttaaaa----gaaaacatattaatagcattttatgcattaataagaactatttctgctgtagtttcacctctt 195  Q
    ||||||||||||||| ||||||||| || ||||    ||||||| ||||| || |||||||||||||   |||||||||  || |||||||| ||||||     
T  21260195 gttctttggtctatagttagaacttactaaaaattaagaaaacacattaaaagtattttatgcattacacagaactattgttgttgtagtttgacctcta 21260096  T
Q  196 atact 200  Q
    |||||    
T  21260095 atact 21260091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 175
Target Start/End: Complemental strand, 33722825 - 33722786
Alignment:
Q  136 aacatattaatagcattttatgcattaataagaactattt 175  Q
    |||||||||||| |||||||||||||||| ||||||||||    
T  33722825 aacatattaatatcattttatgcattaatcagaactattt 33722786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0719 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0719
Description:

Target: scaffold0719; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 5949 - 5899
Alignment:
Q  100 gttctttggtctataattagaactttcttaaaagaaaacatattaatagca 150  Q
    |||||||||||| || ||||||||  |||||||||||||||| ||||||||    
T  5949 gttctttggtctctagttagaactaacttaaaagaaaacataataatagca 5899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 20022 - 19972
Alignment:
Q  100 gttctttggtctataattagaactttcttaaaagaaaacatattaatagca 150  Q
    |||||||||||| || |||||||| | ||||||||||||||| ||||||||    
T  20022 gttctttggtctgtagttagaactattttaaaagaaaacataataatagca 19972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 19962 - 19913
Alignment:
Q  182 tagtttcacctcttatactttatgcttttgttaactactcaaatagaact 231  Q
    ||||||||||||| ||||| ||| || |||||||||| ||||||||||||    
T  19962 tagtttcacctctaatactctatactattgttaactaatcaaatagaact 19913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 39775 - 39824
Alignment:
Q  182 tagtttcacctcttatactttatgcttttgttaactactcaaatagaact 231  Q
    ||||||||||||| ||||| ||| || |||||||||| ||||||||||||    
T  39775 tagtttcacctctaatactctatactattgttaactaatcaaatagaact 39824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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