View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1056_low_60 (Length: 314)
Name: NF1056_low_60
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_low_60 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 46 - 242
Target Start/End: Original strand, 14191724 - 14191920
Alignment:
| Q |
46 |
catattttctttatttgtttatggtctcatatatatttatcttagaaatgaaagtcatgggagttnnnnnnnccttatgatagtcccttttctttaataa |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14191724 |
catattttctttatttgtttatggtctcatatatatttatcttagaaatgaaagtcatgggagttaaaaaaaccttatgatagtcccttttctttaataa |
14191823 |
T |
|
| Q |
146 |
gttaaatcagtccaaggaaattgatacgaaggtccttaattaggctgagatttgttgcctcactcgtagatctagtagcataataaaaatacacaat |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14191824 |
gttaaatcagtccaaggaaattgatacgaaggtccttaattaggctgagatttgttgcctcactcgtagatctagtagcataaaaaaaatacacaat |
14191920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 121 - 311
Target Start/End: Complemental strand, 14192717 - 14192526
Alignment:
| Q |
121 |
tatgatagtcccttttcttt---aataagttaaatcagtccaaggaaattgatacgaaggtccttaattaggctgagatttgttgcctcactcgtagatc |
217 |
Q |
| |
|
|||||||||||||||| ||| || |||| |||||||||| |||||||||| ||| ||||||||| ||||||| ||||||| || |||||||||| |
|
|
| T |
14192717 |
tatgatagtccctttttttttttaagaagtcgaatcagtccatggaaattgattcgatggtccttaa----gctgagaattgttgcatccctcgtagatc |
14192622 |
T |
|
| Q |
218 |
tagtagcataataaaaa--tacacaatttaataggagaaaaaacagtagatacaagaaatatatgatagaacaaaataagttacctttgcttctcc |
311 |
Q |
| |
|
|| ||||| || ||||| |||||||||||||||||| ||||||| ||||| ||||||||||| |||||||||||||| |||||||| |||||||| |
|
|
| T |
14192621 |
tactagcagaaaaaaaaaatacacaatttaataggaggaaaaacaatagatccaagaaatatacgatagaacaaaatatgttaccttagcttctcc |
14192526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 212 - 302
Target Start/End: Original strand, 14209680 - 14209769
Alignment:
| Q |
212 |
tagatctagtagcataataaaaatacacaatttaataggagaaaaaacagtagatacaagaaatatatgatagaacaaaataagttacctt |
302 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14209680 |
tagatctagtagcagaa-aaaaatacacaatttaataggagaaaaaacagtagatccaagaaacatatgatagaacaaaataagttacctt |
14209769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 230 - 311
Target Start/End: Original strand, 17536034 - 17536115
Alignment:
| Q |
230 |
aaaaatacacaatttaataggagaaaaaacagtagatacaagaaatatatgatagaacaaaataagttacctttgcttctcc |
311 |
Q |
| |
|
|||| |||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||| ||||||| | |||||| |
|
|
| T |
17536034 |
aaaattacacaatttaataggagaaaaaataatagatctaagaaatatatgatagaacaaaataatttaccttagtttctcc |
17536115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 293
Target Start/End: Original strand, 17531721 - 17531785
Alignment:
| Q |
230 |
aaaaatacacaatttaataggag-aaaaaacagtagatacaagaaatatatgatagaacaaaata |
293 |
Q |
| |
|
|||| |||||||||||||||||| |||||| | ||||| ||||||||||||||||| ||||||| |
|
|
| T |
17531721 |
aaaattacacaatttaataggagaaaaaaataatagatctaagaaatatatgatagatcaaaata |
17531785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University