View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1056_low_65 (Length: 301)
Name: NF1056_low_65
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_low_65 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 47255837 - 47255586
Alignment:
| Q |
1 |
tgttatatcagcttcagcttcaatgaacatgacaccctccccggtgcaatccaccatcaacttgcgcccagcaccctccctaatccttcctgcccctgga |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47255837 |
tgttatatcagcttcagcttcaatgaacatgacaccctccccggtgcaatccaccatcaacttgcgcccagcaccctccctaatccttcctgcacctgga |
47255738 |
T |
|
| Q |
101 |
tagtaataaacaagtgttcgtgagagtgcatgtttaagaaccttaacagggtctttctctttcattgaaggttcatgacgaaagacaaatatgacaggaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47255737 |
tagtaataaacaagtgttcgtgagagtgcatgtttaagaaccttaacagggtctttctctttcattgaaggttcatgacgaaagacaaatatgacaggaa |
47255638 |
T |
|
| Q |
201 |
gattgaaacgaaggccttcttgatcatcaatgtcagagaggagtttaacttc |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47255637 |
gattgaaacgaaggccttcttgatcatcaatgtcagagaggagtttaacttc |
47255586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 2 - 252
Target Start/End: Complemental strand, 47264880 - 47264630
Alignment:
| Q |
2 |
gttatatcagcttcagcttcaatgaacatgacaccctccccggtgcaatccaccatcaacttgcgcccagcaccctccctaatccttcctgcccctggat |
101 |
Q |
| |
|
|||| ||||||||||||||||| |||||| || ||||| || || ||||| |||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
47264880 |
gttacatcagcttcagcttcaacgaacataactccctcgccagtacaatcgaccatcaacttgcgtccagcaccctccctaatccttcctgcaaatggat |
47264781 |
T |
|
| Q |
102 |
agtaataaacaagtgttcgtgagagtgcatgtttaagaaccttaacagggtctttctctttcattgaaggttcatgacgaaagacaaatatgacaggaag |
201 |
Q |
| |
|
||||||||||||||| | |||||||||||||| ||||||| |||||||| ||||| ||||||||||| |||||||||||| ||| ||| || | ||||| |
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|
| T |
47264780 |
agtaataaacaagtgcttgtgagagtgcatgtctaagaactttaacaggatctttttctttcattgacggttcatgacgatagataaacatcataggaat |
47264681 |
T |
|
| Q |
202 |
attgaaacgaaggccttcttgatcatcaatgtcagagaggagtttaacttc |
252 |
Q |
| |
|
||||||||| | ||||||||| ||||| |||||||| | ||||||||||| |
|
|
| T |
47264680 |
attgaaacgtaagccttcttggtcatctatgtcagacaatagtttaacttc |
47264630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 7 - 252
Target Start/End: Complemental strand, 47275443 - 47275198
Alignment:
| Q |
7 |
atcagcttcagcttcaatgaacatgacaccctccccggtgcaatccaccatcaacttgcgcccagcaccctccctaatccttcctgcccctggatagtaa |
106 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||| ||||| |||||||||||||||||| || ||| ||||||||||| ||||| || |||||| ||| |
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|
| T |
47275443 |
atcagtttcagcttcaatgaacatgactccctcaccggtacaatccaccatcaacttgtccctagctccctccctaattcttcccgcaagtggataataa |
47275344 |
T |
|
| Q |
107 |
taaacaagtgttcgtgagagtgcatgtttaagaaccttaacagggtctttctctttcattgaaggttcatgacgaaagacaaatatgacaggaagattga |
206 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||| |||||||||||| ||| |||||||| ||| | ||||| |
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| T |
47275343 |
taaacaagtgtttgtgagagtgcacgtttaagaaccttagcagggtctttctctatcattgatggttcatgacgatagataaatatgataggcatattga |
47275244 |
T |
|
| Q |
207 |
aacgaaggccttcttgatcatcaatgtcagagaggagtttaacttc |
252 |
Q |
| |
|
|||| | || |||||||||||| |||||||| | ||||||||||| |
|
|
| T |
47275243 |
aacgcaagcattcttgatcatctatgtcagataatagtttaacttc |
47275198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 47296308 - 47296559
Alignment:
| Q |
1 |
tgttatatcagcttcagcttcaatgaacatgacaccctccccggtgcaatccaccatcaacttgcgcccagcaccctccctaatccttcctgcccctgga |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| || || || |||||||||||||||||||||||||| ||||||||||| ||||| || |||| |
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|
| T |
47296308 |
tgttacatcagcttcagcttcaatgaacatgacaccttcaccagtacaatccaccatcaacttgcgcccagctccctccctaattcttcccgcaagtgga |
47296407 |
T |
|
| Q |
101 |
tagtaataaacaagtgttcgtgagagtgcatgtttaagaaccttaacagggtctttctctttcattgaaggttcatgacgaaagacaaatatgacaggaa |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||| ||||||| ||||||||||||| |||||| |||| || ||| ||| ||||||||||||| |
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|
| T |
47296408 |
tagtaatacacaagtgttcgtgagagtgcatgtctaagcaccttaagagggtctttctctaccattgatggtttgtggcgatagataaatatgacaggac |
47296507 |
T |
|
| Q |
201 |
gattgaaacgaaggccttcttgatcatcaatgtcagagaggagtttaacttc |
252 |
Q |
| |
|
|||||| || | |||||||||||||| |||||||| | ||||||||||| |
|
|
| T |
47296508 |
tattgaatcgcataccttcttgatcatctatgtcagataatagtttaacttc |
47296559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 47300900 - 47301151
Alignment:
| Q |
1 |
tgttatatcagcttcagcttcaatgaacatgacaccctccccggtgcaatccaccatcaacttgcgcccagcaccctccctaatccttcctgcccctgga |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| || || |||||||||||||||||||| | ||| ||||||||||||||||| || |||| |
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|
| T |
47300900 |
tgttacatcagcttcagcttcaatgaacatgacaccctcgccagtacaatccaccatcaacttgcgactagctccctccctaatccttcccgcaaatgga |
47300999 |
T |
|
| Q |
101 |
tagtaataaacaagtgttcgtgagagtgcatgtttaagaaccttaacagggtctttctctttcattgaaggttcatgacgaaagacaaatatgacaggaa |
200 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| | |||||||||||||||||||||||| |||||| ||||| ||| || ||| ||| || | ||||| |
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|
| T |
47301000 |
tagtaataaacaagtgcttgtgagagtgcatgtctcagaaccttaacagggtctttctctgccattgatggttcgtgatgatagataaagatcataggaa |
47301099 |
T |
|
| Q |
201 |
gattgaaacgaaggccttcttgatcatcaatgtcagagaggagtttaacttc |
252 |
Q |
| |
|
|||||| || | |||||||||||||| |||||||| | ||||||||||| |
|
|
| T |
47301100 |
tattgaagcgcaaaccttcttgatcatctatgtcagataatagtttaacttc |
47301151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 47282190 - 47281936
Alignment:
| Q |
1 |
tgttatatcagcttcagcttcaatgaacatgacaccctccccg---gtgcaatccaccatcaacttgcgcccagcaccctccctaatccttcctgcccct |
97 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| || || || |||||||||||||| ||| || ||| ||||||||||| ||||| || | |
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|
| T |
47282190 |
tgttacatcagcttcagcttcaatgaacatgacaccttcaccaccagtacaatccaccatcaatttgtccctagctccctccctaattcttcccgcaagt |
47282091 |
T |
|
| Q |
98 |
ggatagtaataaacaagtgttcgtgagagtgcatgtttaagaaccttaacagggtctttctctttcattgaaggttcatgacgaaagacaaatatgacag |
197 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| | |||||| ||||| |||||| ||| |||||||| || |
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|
| T |
47282090 |
ggatagtaataaacaagtgtttttgagagtgcacatttaagaaccttaacagggtctttctttaccattgatggttcgtgacgatagataaatatgatag |
47281991 |
T |
|
| Q |
198 |
gaagattgaaacgaaggccttcttgatcatcaatgtcagagaggagtttaacttc |
252 |
Q |
| |
|
| | ||||||||| | | |||||||||||| |||||||| | ||||||||||| |
|
|
| T |
47281990 |
gcatattgaaacgcaaacattcttgatcatctatgtcagataatagtttaacttc |
47281936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 47240885 - 47240818
Alignment:
| Q |
1 |
tgttatatcagcttcagcttcaatgaacatgacaccctccccggtgcaatccaccatcaacttgcgcc |
68 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| || || || |||||||||||||||||||||| |
|
|
| T |
47240885 |
tgttacatcagcttcagcttcaatgaacatgacaccttcaccagtacaatccaccatcaacttgcgcc |
47240818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 32729550 - 32729299
Alignment:
| Q |
1 |
tgttatatcagcttcagcttcaatgaacatgacaccctccccggtgcaatccaccatcaacttgcgcccagcaccctccctaatccttcctgcccctgga |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||| || || |||||||||||||||||||||| ||||||||||||||||||||| || ||| |
|
|
| T |
32729550 |
tgttacatcagcttcagcttcaatgaacacgacaccctcaccagtacaatccaccatcaacttgcgcctagcaccctccctaatccttcccgcaaatggg |
32729451 |
T |
|
| Q |
101 |
tagtaataaacaagtgttcgtgagagtgcatgtttaagaaccttaacagggtctttctctttcattgaaggttcatgacgaaagacaaatatgacaggaa |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||| ||||| ||||| ||| |||||||||||||| |
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|
| T |
32729450 |
tagtaatacacaagtgttcgtgagagtgcatgtctaagaaccttaatagggtctttctctgccattgatggttcgcgacgatagataaatatgacaggaa |
32729351 |
T |
|
| Q |
201 |
gattgaaacgaaggccttcttgatcatcaatgtcagagaggagtttaacttc |
252 |
Q |
| |
|
||||||||| | |||||||||||||| || ||||| | ||||||||||| |
|
|
| T |
32729350 |
cattgaaacgcaaaccttcttgatcatctatatcagataatagtttaacttc |
32729299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 20511887 - 20511651
Alignment:
| Q |
1 |
tgttatatcagcttcagcttcaatgaacatgacaccctccccggtgcaatccaccatcaacttgcgcccagcaccctccctaatccttcctgcccctgga |
100 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||| || || ||||||||||| ||||| | ||| | || |||||||||||||| || |||| |
|
|
| T |
20511887 |
tgttacattagcttcagcttcaatgaacatgacaccctcaccagtacaatccaccattaacttttgtccaactccttccctaatccttcccgcaaatgga |
20511788 |
T |
|
| Q |
101 |
tagtaataaacaagtgttcgtgagagtgcatgtttaagaaccttaacagggtctttctctttcattgaaggttcatgacgaaagacaaatatgacaggaa |
200 |
Q |
| |
|
||||||| |||||| | |||||||||||||| |||||||||||||||||||||||| | ||||| | ||||||||| || ||| ||| |||| | ||| |
|
|
| T |
20511787 |
tagtaatgcacaagtacttgtgagagtgcatgtctaagaaccttaacagggtctttctttgtcattaatggttcatgatgatagataaagatgagaagaa |
20511688 |
T |
|
| Q |
201 |
gattgaaacgaaggccttcttgatcatcaatgtcaga |
237 |
Q |
| |
|
|||| |||| || | || ||||||||| |||||||| |
|
|
| T |
20511687 |
tattgcaacggagacttttttgatcatctatgtcaga |
20511651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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