View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_low_72 (Length: 284)
Name: NF1056_low_72
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_low_72 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 29 - 276
Target Start/End: Complemental strand, 54267305 - 54267055
Alignment:
| Q |
29 |
atgataaataatatatataataaactacgtaccaaggtagactgcaacaatcaattacaaagatcaccaccatatata--gaattgaaatgccacatgaa |
126 |
Q |
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| T |
54267305 |
atgataaataatatatataataaactacgtaccaaggtagactgcaacaatcaattacaaagatcaccaccatatatatagaattgaaatgccacatgaa |
54267206 |
T |
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| Q |
127 |
aataagttaaaacattag-ctaactccatatattgatcaattaatgttggaagaagaaaactaatgaaaaagagtatgaaattaccttgtctccctttct |
225 |
Q |
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| T |
54267205 |
aataagttaaaacattaggctaactccatatattgatcaattaatgttggaagaagaaaactaatgaaaaagagtatgaaattaccttgtctccctttct |
54267106 |
T |
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| Q |
226 |
tgttctgagactcattccaacaattcttgtcccacaaatgagcttcatatc |
276 |
Q |
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| T |
54267105 |
tgttctgagactcattccaacaattcttgtcccacaaatgagcttcatatc |
54267055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 276
Target Start/End: Complemental strand, 1229073 - 1229001
Alignment:
| Q |
204 |
aaattaccttgtctccctttcttgttctgagactcattccaacaattcttgtcccacaaatgagcttcatatc |
276 |
Q |
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| T |
1229073 |
aaatcaccttgtcttcctttcttgctttgtgattcattccagcaattcttatcccacaaatgagcttcatatc |
1229001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 209 - 274
Target Start/End: Complemental strand, 25049855 - 25049790
Alignment:
| Q |
209 |
accttgtctccctttcttgttctgagactcattccaacaattcttgtcccacaaatgagcttcata |
274 |
Q |
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| T |
25049855 |
accttgtcgtccttttttgttttgcgattcattccaacaattcttgtcccacaaatgagcttcata |
25049790 |
T |
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