View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1056_low_73 (Length: 283)

Name: NF1056_low_73
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1056_low_73
NF1056_low_73
[»] chr3 (11 HSPs)
chr3 (48-283)||(5374948-5375183)
chr3 (58-282)||(5369222-5369444)
chr3 (48-130)||(5363178-5363260)
chr3 (48-130)||(5368394-5368476)
chr3 (53-282)||(5356541-5356769)
chr3 (170-246)||(5363276-5363359)
chr3 (225-282)||(7127013-7127070)
chr3 (225-282)||(7178901-7178958)
chr3 (173-210)||(5368495-5368532)
chr3 (60-121)||(7126688-7126749)
chr3 (53-129)||(7178718-7178794)
[»] chr6 (2 HSPs)
chr6 (54-121)||(33839541-33839608)
chr6 (61-121)||(33843461-33843521)
[»] chr8 (1 HSPs)
chr8 (53-125)||(30054498-30054570)
[»] chr7 (1 HSPs)
chr7 (56-121)||(44500709-44500774)
[»] chr4 (1 HSPs)
chr4 (60-121)||(36590659-36590720)
[»] scaffold0210 (1 HSPs)
scaffold0210 (61-121)||(15608-15668)


Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 48 - 283
Target Start/End: Original strand, 5374948 - 5375183
Alignment:
Q  48 gcaaccctattcagctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggttttgaggccgatatatttatattttg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5374948 gcaaccctattcagctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggttttgaggccgatatatttatattttg 5375047  T
Q  148 ttcttcaattgcttgtattttccgtttctttatatataaattttgtctaaaatatataactatccttctttccttcgataggttctctcctttgttcctg 247  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5375048 ttcttcaattgcttgtatttttcgtttctttatatataaattttgtctaaaatatataactatccttctttccttcgataggttctctcctttgttcctg 5375147  T
Q  248 atttgatcaaggttaaactcaattccttgtgtaacc 283  Q
    ||||||||||||||||||||||||||||||||||||    
T  5375148 atttgatcaaggttaaactcaattccttgtgtaacc 5375183  T

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Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 58 - 282
Target Start/End: Original strand, 5369222 - 5369444
Alignment:
Q  58 tcagctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggttttgaggccgatatatttata--ttttgttcttcaa 155  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||  | | ||||| |      
T  5369222 tcagctggctgcaagagcttgctaatatcaaatcattgacagtctcttctaatactcttcaggttttgaggccgttatatttatacgtgtggttctgctg 5369321  T
Q  156 ttgcttgtattttccgtttctttatatataaattttgtctaaaatatataactatccttctttccttcgataggttctctcctttgttcctgatttgatc 255  Q
    ||||||| ||||| |||||  |||||| ||||  ||||||||||| ||| | | ||| |||||| ||| |||||||||||| ||||||||||||||| ||    
T  5369322 ttgcttgcatttt-cgttt-attatatctaaa--ttgtctaaaatgtatgattgtccatctttcattcaataggttctctcttttgttcctgatttgttc 5369417  T
Q  256 aaggttaaactcaattccttgtgtaac 282  Q
    || |||||||||| |||||| ||||||    
T  5369418 aatgttaaactcacttccttatgtaac 5369444  T

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Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 5363178 - 5363260
Alignment:
Q  48 gcaaccctattcagctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggttttgaggcc 130  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5363178 gcaaccctactcagctggctgcttgagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggttttgaggcc 5363260  T

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Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 5368394 - 5368476
Alignment:
Q  48 gcaaccctattcagctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggttttgaggcc 130  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5368394 gcaaccctactcagctggctgctcgagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggttttgaggcc 5368476  T

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Target: chr3; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 53 - 282
Target Start/End: Original strand, 5356541 - 5356769
Alignment:
Q  53 cctattcagctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggttttgaggccgatatatttatatttt----gt 148  Q
    |||| |||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||| | ||||||||||| |     ||    
T  5356541 cctactcagctggctgctagagcttgccaatataaaatcattgacagtctcttctaatactcttcaggttttgaggctgctatatttatatatgtgcggt 5356640  T
Q  149 tcttcaattgcttgtattttccgtttctttatatataaattttgtctaaaatatataactatccttctttccttcgataggttctctcctttgttcctga 248  Q
    |||| | ||||||| ||||  ||||  ||||| | |||||||| |||||||| |   ||  ||| | |||| ||| ||||||||||  | ||||||||||    
T  5356641 tctttagttgcttgcattt--cgtta-tttatttctaaattttttctaaaatgtcggaccgtccatatttcattcaataggttctc--cattgttcctga 5356735  T
Q  249 tttgatcaaggttaaactcaattccttgtgtaac 282  Q
    |||  ||||||||||||| | |||||||||||||    
T  5356736 ttttttcaaggttaaactaacttccttgtgtaac 5356769  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 5363276 - 5363359
Alignment:
Q  170 cgtttctttatatataaattttgtctaaaatata-------taactatccttctttccttcgataggttctctcctttgttcct 246  Q
    ||||||||||||||||||||||||||||||| ||       ||||||||| | | |||||| ||||||||||||||||||||||    
T  5363276 cgtttctttatatataaattttgtctaaaatgtataactattaactatccatttctccttcaataggttctctcctttgttcct 5363359  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 282
Target Start/End: Original strand, 7127013 - 7127070
Alignment:
Q  225 ataggttctctcctttgttcctgatttgatcaaggttaaactcaattccttgtgtaac 282  Q
    ||||||||||||||| ||||||| |||| | |||||||||||| |||||||| |||||    
T  7127013 ataggttctctccttagttcctggtttgttgaaggttaaactccattccttgcgtaac 7127070  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 282
Target Start/End: Original strand, 7178901 - 7178958
Alignment:
Q  225 ataggttctctcctttgttcctgatttgatcaaggttaaactcaattccttgtgtaac 282  Q
    ||||||||||||||| |||||| ||||  ||||||||||||||| | |||||||||||    
T  7178901 ataggttctctccttagttcctaatttattcaaggttaaactcactaccttgtgtaac 7178958  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 5368495 - 5368532
Alignment:
Q  173 ttctttatatataaattttgtctaaaatatataactat 210  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  5368495 ttctttatatataaatttggtctaaaatgtataactat 5368532  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 121
Target Start/End: Original strand, 7126688 - 7126749
Alignment:
Q  60 agctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggt 121  Q
    |||||| ||| |||||||||| ||| |||| |||| || |||||||| ||||||||||||||    
T  7126688 agctggttgcaagagcttgctgataccaaaacattgaccgtctcttcgaatactcttcaggt 7126749  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 7178718 - 7178794
Alignment:
Q  53 cctattcagctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggttttgaggc 129  Q
    |||| ||| |||||| || ||| |||||||||||| |||||| ||  |||||| || ||||||||||||||| ||||    
T  7178718 cctactcaactggcttctcgagtttgctaatatcacatcattgacgatctcttatagtactcttcaggttttaaggc 7178794  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 33839608 - 33839541
Alignment:
Q  54 ctattcagctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggt 121  Q
    |||||||||||||||||||| |||||||| ||  ||||||||||||||||||| | ||||||||||||    
T  33839608 ctattcagctggctgctagaccttgctaacatagaatcattaacagtctcttcaagtactcttcaggt 33839541  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 33843521 - 33843461
Alignment:
Q  61 gctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggt 121  Q
    ||||||||||||| ||||||||  |  |||||||||||||| |||| || |||||||||||    
T  33843521 gctggctgctagaccttgctaacttagaatcattaacagtcacttcaaaaactcttcaggt 33843461  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 30054570 - 30054498
Alignment:
Q  53 cctattcagctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggttttg 125  Q
    |||| ||| |||||| ||| || || |||||||||||||||| || ||||||||| |||||||||||||||||    
T  30054570 cctactcaactggctactacagttttctaatatcaaatcattgactgtctcttctgatactcttcaggttttg 30054498  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 44500774 - 44500709
Alignment:
Q  56 attcagctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggt 121  Q
    |||||||||||| |||||||||||||| || |||||||| || |||||| | | ||||||||||||    
T  44500774 attcagctggctactagagcttgctaacataaaatcattgacggtctctacaactactcttcaggt 44500709  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 121
Target Start/End: Complemental strand, 36590720 - 36590659
Alignment:
Q  60 agctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggt 121  Q
    ||||||||| |||| |||||||||||||||||||| || |||||| | | ||||||||||||    
T  36590720 agctggctgttagaacttgctaatatcaaatcattgacggtctctgcgagtactcttcaggt 36590659  T

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Target: scaffold0210 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 15668 - 15608
Alignment:
Q  61 gctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggt 121  Q
    |||||||| | |||||  |||||||||||||||| |||||| |||| | ||||||||||||    
T  15668 gctggctggtcgagctcactaatatcaaatcattgacagtcccttcaagtactcttcaggt 15608  T

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