View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1056_low_75 (Length: 278)

Name: NF1056_low_75
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1056_low_75
NF1056_low_75
[»] chr6 (17 HSPs)
chr6 (1-259)||(33640781-33641039)
chr6 (7-144)||(16439041-16439178)
chr6 (4-144)||(28900454-28900594)
chr6 (4-144)||(2607245-2607385)
chr6 (4-144)||(24194809-24194949)
chr6 (159-257)||(502715-502806)
chr6 (159-258)||(26206198-26206297)
chr6 (47-129)||(31534736-31534818)
chr6 (159-258)||(15674697-15674796)
chr6 (71-144)||(21010537-21010610)
chr6 (78-129)||(15381217-15381268)
chr6 (159-244)||(11060038-11060123)
chr6 (164-246)||(2554482-2554564)
chr6 (192-258)||(13938583-13938649)
chr6 (164-258)||(17605515-17605609)
chr6 (177-255)||(21549715-21549792)
chr6 (164-258)||(21629303-21629397)
[»] chr8 (33 HSPs)
chr8 (1-146)||(42423539-42423684)
chr8 (4-144)||(12737706-12737846)
chr8 (7-144)||(27878234-27878371)
chr8 (7-144)||(28018415-28018552)
chr8 (11-144)||(27915178-27915311)
chr8 (11-144)||(27961597-27961730)
chr8 (159-259)||(4987241-4987341)
chr8 (4-144)||(27974590-27974730)
chr8 (4-144)||(28031859-28031999)
chr8 (18-144)||(27869563-27869688)
chr8 (5-142)||(12522030-12522167)
chr8 (4-144)||(44977069-44977208)
chr8 (46-144)||(3007432-3007530)
chr8 (46-144)||(8029475-8029572)
chr8 (9-117)||(6387748-6387856)
chr8 (159-258)||(16375279-16375378)
chr8 (61-144)||(24082593-24082676)
chr8 (71-144)||(33177492-33177565)
chr8 (71-128)||(4870784-4870842)
chr8 (164-246)||(41664549-41664631)
chr8 (71-144)||(19484588-19484661)
chr8 (100-144)||(7760953-7760997)
chr8 (164-248)||(32267429-32267513)
chr8 (109-144)||(41394306-41394341)
chr8 (164-254)||(13878668-13878758)
chr8 (164-249)||(9923475-9923560)
chr8 (164-213)||(11393512-11393561)
chr8 (159-244)||(17659720-17659805)
chr8 (96-144)||(24067259-24067305)
chr8 (99-144)||(35879824-35879869)
chr8 (99-144)||(37131200-37131245)
chr8 (164-212)||(12135132-12135180)
chr8 (203-247)||(45255060-45255104)
[»] chr4 (31 HSPs)
chr4 (1-146)||(29509683-29509828)
chr4 (1-146)||(32890210-32890355)
chr4 (4-144)||(33139132-33139273)
chr4 (4-144)||(24966115-24966255)
chr4 (159-259)||(8935938-8936038)
chr4 (159-259)||(19648559-19648659)
chr4 (46-141)||(50517494-50517589)
chr4 (46-144)||(46862568-46862667)
chr4 (1-117)||(46287045-46287162)
chr4 (46-129)||(35518147-35518230)
chr4 (159-258)||(19115301-19115400)
chr4 (159-258)||(23872653-23872752)
chr4 (159-258)||(55299486-55299585)
chr4 (159-258)||(29552977-29553076)
chr4 (159-258)||(20675900-20675999)
chr4 (71-129)||(25842621-25842679)
chr4 (164-249)||(1827721-1827806)
chr4 (101-144)||(26490899-26490942)
chr4 (71-129)||(26955682-26955740)
chr4 (71-144)||(40317295-40317368)
chr4 (71-144)||(40327369-40327442)
chr4 (176-255)||(26694796-26694875)
chr4 (164-246)||(19756144-19756226)
chr4 (164-246)||(19783580-19783662)
chr4 (87-128)||(4511593-4511634)
chr4 (71-144)||(29469538-29469611)
chr4 (100-141)||(871954-871995)
chr4 (71-144)||(8084566-8084639)
chr4 (99-144)||(24454025-24454070)
chr4 (159-247)||(34976817-34976905)
chr4 (80-144)||(42937234-42937298)
[»] chr7 (20 HSPs)
chr7 (4-144)||(16709875-16710015)
chr7 (4-144)||(17684111-17684251)
chr7 (8-144)||(43172407-43172543)
chr7 (159-259)||(45993440-45993540)
chr7 (47-144)||(23017364-23017461)
chr7 (33-144)||(21486502-21486614)
chr7 (47-144)||(42610892-42610989)
chr7 (28-128)||(5771754-5771853)
chr7 (159-254)||(13440927-13441022)
chr7 (95-144)||(31445773-31445822)
chr7 (71-139)||(1254147-1254215)
chr7 (159-246)||(34232578-34232665)
chr7 (71-144)||(6268851-6268924)
chr7 (71-144)||(14741826-14741899)
chr7 (71-144)||(4639527-4639600)
chr7 (164-213)||(36227332-36227381)
chr7 (108-144)||(33497004-33497040)
chr7 (164-249)||(17721509-17721594)
chr7 (102-143)||(26201700-26201741)
chr7 (164-249)||(29968848-29968933)
[»] chr3 (23 HSPs)
chr3 (4-144)||(49458703-49458843)
chr3 (5-144)||(7437171-7437310)
chr3 (4-144)||(4962333-4962473)
chr3 (10-144)||(43173246-43173380)
chr3 (11-144)||(33693610-33693743)
chr3 (46-144)||(21386111-21386209)
chr3 (159-258)||(6175653-6175752)
chr3 (164-255)||(48569204-48569295)
chr3 (71-144)||(30238192-30238264)
chr3 (164-231)||(24925866-24925933)
chr3 (71-146)||(53836333-53836408)
chr3 (192-258)||(962372-962438)
chr3 (164-246)||(34331996-34332078)
chr3 (71-110)||(9031707-9031746)
chr3 (176-255)||(36709777-36709856)
chr3 (176-255)||(42674631-42674710)
chr3 (164-258)||(12341436-12341530)
chr3 (71-121)||(29690976-29691026)
chr3 (164-258)||(43120855-43120949)
chr3 (164-213)||(21739669-21739718)
chr3 (71-144)||(49296489-49296562)
chr3 (100-144)||(21718360-21718404)
chr3 (159-247)||(46907846-46907934)
[»] chr2 (25 HSPs)
chr2 (8-132)||(31846802-31846926)
chr2 (8-144)||(9731286-9731422)
chr2 (1-144)||(34342578-34342721)
chr2 (7-144)||(38295346-38295484)
chr2 (4-144)||(40829971-40830110)
chr2 (159-258)||(13551447-13551546)
chr2 (18-140)||(18727269-18727391)
chr2 (71-144)||(32294259-32294332)
chr2 (159-258)||(25380569-25380669)
chr2 (76-129)||(24026204-24026257)
chr2 (71-128)||(37810530-37810587)
chr2 (174-258)||(15018542-15018626)
chr2 (71-144)||(18899556-18899629)
chr2 (198-255)||(22724654-22724711)
chr2 (71-129)||(30850788-30850846)
chr2 (71-119)||(2308394-2308442)
chr2 (100-144)||(3858323-3858367)
chr2 (164-212)||(11233670-11233718)
chr2 (179-255)||(33515389-33515465)
chr2 (176-255)||(8065454-8065533)
chr2 (111-144)||(2308179-2308212)
chr2 (164-212)||(9668187-9668235)
chr2 (108-144)||(15926489-15926525)
chr2 (191-255)||(28399758-28399822)
chr2 (218-258)||(33411341-33411381)
[»] chr1 (27 HSPs)
chr1 (1-144)||(49452682-49452825)
chr1 (1-144)||(25253862-25254008)
chr1 (4-144)||(35176891-35177031)
chr1 (7-144)||(3593577-3593714)
chr1 (163-259)||(25504172-25504268)
chr1 (4-144)||(32759724-32759864)
chr1 (4-144)||(42304004-42304144)
chr1 (4-144)||(47371192-47371332)
chr1 (4-144)||(49236620-49236760)
chr1 (46-144)||(28403603-28403701)
chr1 (47-119)||(48966153-48966225)
chr1 (159-258)||(5497951-5498050)
chr1 (159-258)||(48072602-48072701)
chr1 (159-258)||(32352488-32352587)
chr1 (83-144)||(19863274-19863335)
chr1 (76-144)||(46042298-46042366)
chr1 (71-144)||(226316-226389)
chr1 (71-144)||(1242934-1243007)
chr1 (71-118)||(5208933-5208980)
chr1 (164-243)||(20796540-20796619)
chr1 (164-243)||(39431166-39431245)
chr1 (174-244)||(17708937-17709007)
chr1 (71-144)||(41353816-41353889)
chr1 (71-118)||(11578779-11578826)
chr1 (159-244)||(7395898-7395981)
chr1 (102-140)||(52182484-52182522)
chr1 (71-144)||(8147737-8147810)
[»] scaffold0573 (1 HSPs)
scaffold0573 (4-144)||(9200-9340)
[»] chr5 (18 HSPs)
chr5 (4-144)||(29716524-29716664)
chr5 (4-126)||(34218769-34218890)
chr5 (159-258)||(22094425-22094524)
chr5 (70-128)||(36196017-36196075)
chr5 (71-129)||(15286132-15286190)
chr5 (84-144)||(31913805-31913865)
chr5 (71-144)||(5650426-5650499)
chr5 (164-254)||(27796353-27796443)
chr5 (164-258)||(33385154-33385248)
chr5 (164-249)||(28534857-28534942)
chr5 (71-144)||(28622821-28622894)
chr5 (167-256)||(31865164-31865253)
chr5 (92-144)||(21490040-21490091)
chr5 (164-258)||(25856620-25856714)
chr5 (164-234)||(30509204-30509274)
chr5 (164-234)||(30549547-30549617)
chr5 (164-249)||(23239257-23239342)
chr5 (203-247)||(6050116-6050160)
[»] scaffold0013 (1 HSPs)
scaffold0013 (4-144)||(89621-89762)
[»] scaffold0118 (1 HSPs)
scaffold0118 (76-129)||(38242-38295)
[»] scaffold1350 (1 HSPs)
scaffold1350 (164-255)||(412-503)


Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 33641039 - 33640781
Alignment:
Q  1 ccaacggtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttat 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33641039 ccaacggtggaaattcagatttcgacgtcggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttat 33640940  T
Q  101 tttttagatagttttattaacaactttaggaaattgtgaaacttccnnnnnnnggatggtttctgggaccctgttgtgaatcgtataaagtctagactgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  33640939 tttttagatagttttattaacaactttaggaaattgtgaaacttcctttttttggatggtttctgggaccctgttgtgaatcgtataaagtctagactgt 33640840  T
Q  201 caggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgtg 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33640839 caggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgtg 33640781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 7 - 144
Target Start/End: Original strand, 16439041 - 16439178
Alignment:
Q  7 gtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttatttttta 106  Q
    ||||||||| ||||||||||||||||||||||||||   ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  16439041 gtggaaatttagatttcgacgccggtgattgcgacgttggttagggttgcagtggtggtgtttgttgaccttttgaagaaattaactagtttatttttta 16439140  T
Q  107 gatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||||||||||||||||| || |||||||||||    
T  16439141 gatagttttattaacaactttagaaacttgtgaaactt 16439178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 28900594 - 28900454
Alignment:
Q  4 acggtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttatttt 103  Q
    |||||||||||||| ||||| |||||| | |||||||| |  ||||||||||  ||||| ||||| |||| |||||||||||||||||||||||||||||    
T  28900594 acggtggaaattcatatttcaacgccgtttattgcgacaccggttagggttgttgtggtagtgtttgttgtccttttgaagaaattaactagtttatttt 28900495  T
Q  104 ttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  28900494 ttagatagttttattaacaactttaggaacttgtgaaactt 28900454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 2607245 - 2607385
Alignment:
Q  4 acggtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttatttt 103  Q
    |||||||||||||| ||||||||  |||||||||||||||  |||||||||| |||||| ||||| |||||||||||||| |||||||||||||| ||||    
T  2607245 acggtggaaattcatatttcgacatcggtgattgcgacgccggttagggttgtggtggtagtgtttgttgaccttttgaaaaaattaactagtttctttt 2607344  T
Q  104 ttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||||||||||| ||||||||||||| || |||| ||||||    
T  2607345 ttagatagtttttttaacaactttagaaacttgtaaaactt 2607385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 24194809 - 24194949
Alignment:
Q  4 acggtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttatttt 103  Q
    |||||||||||||| |||| |||| |||||||| | || |  |||||| |||||||||||| ||| | ||||||||||||||||||||||||||||||||    
T  24194809 acggtggaaattcatattttgacgtcggtgattacaacactggttaggattgcggtggtggagtttgctgaccttttgaagaaattaactagtttatttt 24194908  T
Q  104 ttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
T  24194909 ttagatagttttaataacaactttaggaatttgtgaaactt 24194949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 159 - 257
Target Start/End: Original strand, 502715 - 502806
Alignment:
Q  159 gtttctgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctg 257  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||    
T  502715 gtttctgggaccctgttgtgaatcgtataaaaactagactgtcaggttggaatagtcgtttcctct-------gggccgtttggttcttctcaaatctg 502806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 159 - 258
Target Start/End: Complemental strand, 26206297 - 26206198
Alignment:
Q  159 gtttctgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgt 258  Q
    |||||||||| ||| ||||||||||||| || ||||||||||| |||||||||||||| || || ||||||||||| || ||||||||||||||||||||    
T  26206297 gtttctgggaacctattgtgaatcgtattaaatctagactgtcgggttggaatagtcggtttctatcttttggtggtcgcttggttcttctcaaatctgt 26206198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 31534818 - 31534736
Alignment:
Q  47 ttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttag 129  Q
    |||||||||||||  ||||||| ||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  31534818 ttagggttgcggtcatggtgtttgttgatcttttgaagaaattaagtagtttatttcttagatagttttattaacaactttag 31534736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 159 - 258
Target Start/End: Complemental strand, 15674796 - 15674697
Alignment:
Q  159 gtttctgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgt 258  Q
    |||||||||| ||| ||||||||||||| || ||||||||||| ||||||||||| || || |||||||||||||| || | |||||| |||||||||||    
T  15674796 gtttctgggaacctattgtgaatcgtattaaatctagactgtcgggttggaatagacggtttctctcttttggtggtcgctgggttctactcaaatctgt 15674697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 21010610 - 21010537
Alignment:
Q  71 ttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||| |||||||||||||||||||||||||  ||| ||||| || |||||||||||||| || |||||||||||    
T  21010610 ttgaacttttgaagaaattaactagtttataattttgataggttaattaacaactttagaaacttgtgaaactt 21010537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 15381268 - 15381217
Alignment:
Q  78 tttgaagaaattaactagtttattttttagatagttttattaacaactttag 129  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||| |||||    
T  15381268 tttgaagaaattaacttgtttattttttggatagttttattaacaattttag 15381217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 244
Target Start/End: Original strand, 11060038 - 11060123
Alignment:
Q  159 gtttctgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggtt 244  Q
    |||||||||| ||| ||||||||||||||||  ||||  |||| |||||||| ||||||||  | ||||||||||||||| |||||    
T  11060038 gtttctgggatcctattgtgaatcgtataaaagctaggttgtctggttggaacagtcgttttttatcttttggtggccgtctggtt 11060123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 246
Target Start/End: Complemental strand, 2554564 - 2554482
Alignment:
Q  164 tgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttct 246  Q
    ||||| ||||||||||||||||| || |||||| |||| |||||  | ||||| ||||| ||||| ||||| |||||| ||||    
T  2554564 tgggaacctgttgtgaatcgtattaaatctagattgtctggttgacaaagtcggttcctttctttcggtggtcgtttgattct 2554482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 13938649 - 13938583
Alignment:
Q  192 ctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgt 258  Q
    ||||| |||| ||| || ||||||| ||||| |||||||||||||| ||| | ||||||||||||||    
T  13938649 ctagattgtctggtcggcatagtcggttcctttcttttggtggccgattgatccttctcaaatctgt 13938583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 258
Target Start/End: Original strand, 17605515 - 17605609
Alignment:
Q  164 tgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgt 258  Q
    ||||| ||| |||| |||||||||||||||||| ||||  ||||| ||| | | | ||| || |||||||| |||||| | ||||||||||||||    
T  17605515 tgggagcctattgttaatcgtataaagtctagattgtctagttggcataataggtacctttcctttggtggtcgtttgatacttctcaaatctgt 17605609  T

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Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 21549792 - 21549715
Alignment:
Q  177 tgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatc 255  Q
    ||||||| || || ||||||||| | |||||||||||| | || ||||||||||||||||| ||| |||| ||||||||    
T  21549792 tgaatcgcattaaatctagactgac-ggttggaatagtagatttctctcttttggtggccgcttgattctcctcaaatc 21549715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 258
Target Start/End: Original strand, 21629303 - 21629397
Alignment:
Q  164 tgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgt 258  Q
    ||||| ||| |||| ||| |||||||||||||| |||| |||||| ||||| | | ||| || |||||||| || ||| | ||||||||||||||    
T  21629303 tgggagcctattgttaattgtataaagtctagattgtctggttggcatagtaggtacctttcctttggtggtcgcttgatacttctcaaatctgt 21629397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 42423539 - 42423684
Alignment:
Q  1 ccaacggtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42423539 ccaacggtggaaattcagatttcgacgccggtgattgcgacgccagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttat 42423638  T
Q  101 tttttagatagttttattaacaactttaggaaattgtgaaacttcc 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  42423639 tttttagatagttttattaacaactttaggaaattgtgaaacttcc 42423684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 12737846 - 12737706
Alignment:
Q  4 acggtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttatttt 103  Q
    |||||| ||||||||||||||| |||| |||||||||||   ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  12737846 acggtgaaaattcagatttcgatgccgatgattgcgacgttggttagggttgcagtggtggtgtttgttgaccttttgaagaaattaactagtttatttt 12737747  T
Q  104 ttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    | ||||||| ||||||||||||||||||| |||||||||||    
T  12737746 taagatagtattattaacaactttaggaacttgtgaaactt 12737706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 27878371 - 27878234
Alignment:
Q  7 gtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttatttttta 106  Q
    ||||||||| |||||||||||||||||||||  | |   |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  27878371 gtggaaatttagatttcgacgccggtgattgttatgtcggttagggttgcgatggtggtgtttgttgaccttttgaagaaattaactagtttatttttta 27878272  T
Q  107 gatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  27878271 gatagttttattatcaactttaggaacttgtgaaactt 27878234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 28018552 - 28018415
Alignment:
Q  7 gtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttatttttta 106  Q
    ||||||||| |||||||||||||||||||||  | |   |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  28018552 gtggaaatttagatttcgacgccggtgattgttatgtcggttagggttgcgatggtggtgtttgttgaccttttgaagaaattaactagtttatttttta 28018453  T
Q  107 gatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  28018452 gatagttttattatcaactttaggaacttgtgaaactt 28018415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 27915311 - 27915178
Alignment:
Q  11 aaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttattttttagata 110  Q
    ||||| |||||||||||||||||||||  | |   |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27915311 aaatttagatttcgacgccggtgattgttatgtcggttagggttgcgatggtggtgtttgttgaccttttgaagaaattaactagtttattttttagata 27915212  T
Q  111 gttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||||||| |||||||| |||||||||||    
T  27915211 gttttattaacaattttaggaacttgtgaaactt 27915178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 27961730 - 27961597
Alignment:
Q  11 aaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttattttttagata 110  Q
    ||||| |||||||||||||||||||||  | |   |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27961730 aaatttagatttcgacgccggtgattgttatgtcggttagggttgcgatggtggtgtttgttgaccttttgaagaaattaactagtttattttttagata 27961631  T
Q  111 gttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||||||| |||||||| |||||||||||    
T  27961630 gttttattaacaattttaggaacttgtgaaactt 27961597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 159 - 259
Target Start/End: Original strand, 4987241 - 4987341
Alignment:
Q  159 gtttctgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgt 258  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4987241 gtttctgggaccctgttgtgaatcgtgtaaaatctagactgtcaggttggaatagtcgtttcctttcttttggtggccgtttggttcttctcaaatctgt 4987340  T
Q  259 g 259  Q
    |    
T  4987341 g 4987341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 27974730 - 27974590
Alignment:
Q  4 acggtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttatttt 103  Q
    |||||||||||| ||||| |||||||||||||||||| ||  |||||| || ||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  27974730 acggtggaaatttagattccgacgccggtgattgcgatgccggttaggatttcggtggtggtgtttgtttaccttttgaagaaattaactagtttatttt 27974631  T
Q  104 ttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||| ||||||| | |||||||||||||| |||||||||||    
T  27974630 ttaggtagttttgtcaacaactttaggaacttgtgaaactt 27974590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 28031999 - 28031859
Alignment:
Q  4 acggtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttatttt 103  Q
    |||||||||||| ||||| |||||||||||||||||| ||  |||||| || ||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  28031999 acggtggaaatttagattccgacgccggtgattgcgatgccggttaggatttcggtggtggtgtttgtttaccttttgaagaaattaactagtttatttt 28031900  T
Q  104 ttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||| ||||||| | |||||||||||||| |||||||||||    
T  28031899 ttaggtagttttgtcaacaactttaggaacttgtgaaactt 28031859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 27869688 - 27869563
Alignment:
Q  18 gatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttattttttagatagttttat 117  Q
    |||||||| |||||||||||| |  |  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27869688 gatttcgatgccggtgattgcaatcccggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttat-ttttagatagttttat 27869590  T
Q  118 taacaactttaggaaattgtgaaactt 144  Q
    ||||||||||||||| |||||||||||    
T  27869589 taacaactttaggaacttgtgaaactt 27869563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 5 - 142
Target Start/End: Complemental strand, 12522167 - 12522030
Alignment:
Q  5 cggtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttattttt 104  Q
    ||||||||||||||||| |||||||| ||||||||  |    || ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  12522167 cggtggaaattcagattgcgacgccgatgattgcgttgtcgatttgggttgcggcggtggtgtttgttgaccttttgaagaaattaactagtttattttt 12522068  T
Q  105 tagatagttttattaacaactttaggaaattgtgaaac 142  Q
    | |||||||||| ||||||||||||||| |||||||||    
T  12522067 ttgatagttttaataacaactttaggaacttgtgaaac 12522030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 44977069 - 44977208
Alignment:
Q  4 acggtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttatttt 103  Q
    |||||| |||||||||||||||| | | |||  ||||| | ||||||||||| ||| ||| |||| ||  ||||||||||||||||||||||||||||||    
T  44977069 acggtgaaaattcagatttcgacacggatgagagcgacaccagttagggttgtggtagtgctgtttgta-accttttgaagaaattaactagtttatttt 44977167  T
Q  104 ttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  44977168 ttagatagttttattaacaactttaggaacttgtgaaactt 44977208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 3007530 - 3007432
Alignment:
Q  46 gttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||| |||||||||||| |||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||| ||||||    
T  3007530 gttagagttgcggtggtgttgtttgttgaccatttgaagaaattaactagtttattttttatatagttttattaacaactttatgaacttgtaaaactt 3007432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 8029572 - 8029475
Alignment:
Q  46 gttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||||||||| |||||| ||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  8029572 gttagggttgtggtggtagtgtttgttgacttttt-aagaaattaactagtttattttttagatagttttattaacaattttaggaacttgtgaaactt 8029475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 6387856 - 6387748
Alignment:
Q  9 ggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttattttttaga 108  Q
    |||||||| |||| | |||||||||||||||| |   ||||||||||||||||||||||| | |||| |||||||||||||| | |||||||||||| ||    
T  6387856 ggaaattccgattgcaacgccggtgattgcgatgttggttagggttgcggtggtggtgtttgatgactttttgaagaaattagccagtttattttttgga 6387757  T
Q  109 tagttttat 117  Q
    |||||||||    
T  6387756 tagttttat 6387748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 159 - 258
Target Start/End: Original strand, 16375279 - 16375378
Alignment:
Q  159 gtttctgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgt 258  Q
    |||||||||| ||| ||||||| ||||| || |||||||||| ||||||||||||||| || |||||||||||||| || |||||||| |||||||||||    
T  16375279 gtttctgggaacctattgtgaaccgtattaaatctagactgttaggttggaatagtcggtttctctcttttggtggtcgcttggttctactcaaatctgt 16375378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 61 - 144
Target Start/End: Original strand, 24082593 - 24082676
Alignment:
Q  61 gtggtgttagttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||||||| | ||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||| ||| |||||||||||    
T  24082593 gtggtgtttgatgaccttctgaagaaattaagtagtttattttttagatagtttaattaacaactttacgaacttgtgaaactt 24082676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 33177565 - 33177492
Alignment:
Q  71 ttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||| |||||||| ||||||||||||||||||||| ||||| ||||||||||||||||  || |||||||||||    
T  33177565 ttgaacttttgaaaaaattaactagtttattttttggataggtttattaacaactttaaaaacttgtgaaactt 33177492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 4870842 - 4870784
Alignment:
Q  71 ttgaccttttgaagaaattaactagtttatt-ttttagatagttttattaacaacttta 128  Q
    |||| ||||||||| |||||||||||||||| |||| ||||||||||||||||||||||    
T  4870842 ttgaacttttgaagtaattaactagtttatttttttggatagttttattaacaacttta 4870784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 246
Target Start/End: Original strand, 41664549 - 41664631
Alignment:
Q  164 tgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttct 246  Q
    ||||| ||||||||||||||||| || |||||| |||| |||||| | ||||| ||||| ||||| ||||| |||||| ||||    
T  41664549 tgggaacctgttgtgaatcgtattaaatctagattgtctggttggcaaagtcggttcctatctttcggtggtcgtttgattct 41664631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 19484588 - 19484661
Alignment:
Q  71 ttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||| |||||||||| ||||||| |||||| ||||||||||||  ||| ||||  || |||||||||||    
T  19484588 ttgacctttcgaagaaattacctagtttgttttttggatagttttattctcaagtttataaacttgtgaaactt 19484661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 7760953 - 7760997
Alignment:
Q  100 ttttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||| |||||||||||||||||||| |||||| |||||||||||    
T  7760953 tttttaagatagttttattaacaactctaggaacttgtgaaactt 7760997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 32267513 - 32267429
Alignment:
Q  164 tgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttc 248  Q
    ||||| ||||||||||| ||||| || |||||| |||| |||||| | ||||| ||||| ||||| ||||| |||||| ||||||    
T  32267513 tgggaacctgttgtgaaccgtattaaatctagattgtctggttggcaaagtcggttcctttctttcggtggtcgtttgattcttc 32267429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 144
Target Start/End: Original strand, 41394306 - 41394341
Alignment:
Q  109 tagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||||||||||||||||||||||| |||||||||||    
T  41394306 tagttttattaacaactttaggaacttgtgaaactt 41394341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 254
Target Start/End: Original strand, 13878668 - 13878758
Alignment:
Q  164 tgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaat 254  Q
    ||||| |||||||| |||||||| ||  || || |||| |||||| ||||||| ||||| ||||||||||| ||| |  ||||||||||||    
T  13878668 tgggagcctgttgttaatcgtattaaaactcgattgtctggttggcatagtcggttcctttcttttggtggtcgtctaattcttctcaaat 13878758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 9923560 - 9923475
Alignment:
Q  164 tgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttct 249  Q
    ||||| |||||||| ||||| || ||   |||| |||| |||||| | ||||| ||||| ||||||||||| ||||||||||||||    
T  9923560 tgggaacctgttgttaatcgcattaaaaatagattgtctggttggcaaagtcgattcctttcttttggtggtcgtttggttcttct 9923475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 11393512 - 11393561
Alignment:
Q  164 tgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatag 213  Q
    ||||||||||||||||||   || || |||||||||||||||||||||||    
T  11393512 tgggaccctgttgtgaataaaattaaatctagactgtcaggttggaatag 11393561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 244
Target Start/End: Complemental strand, 17659805 - 17659720
Alignment:
Q  159 gtttctgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggtt 244  Q
    |||||| ||| ||| ||||||||||||||||  ||||  ||||  |||| |||||||||||| | |||||||| |||||| |||||    
T  17659805 gtttctaggatcctattgtgaatcgtataaaagctaggttgtcttgttgaaatagtcgtttcttatcttttggaggccgtctggtt 17659720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 24067259 - 24067305
Alignment:
Q  96 tttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||||||||||  |||||||||||||||||||||||| ||| |||||||    
T  24067259 tttatttttta--tagttttattaacaactttaggaacttgagaaactt 24067305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 35879824 - 35879869
Alignment:
Q  99 attttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||||||| ||||||||||||||||| |||||||  ||||||||||    
T  35879824 attttttatatagttttattaacaacgttaggaacgtgtgaaactt 35879869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 37131245 - 37131200
Alignment:
Q  99 attttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||||||  |||||||||||||||| |||||||| |||||||||||    
T  37131245 attttttttatagttttattaacaattttaggaacttgtgaaactt 37131200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 12135180 - 12135132
Alignment:
Q  164 tgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaata 212  Q
    ||||| ||| ||||||||||||| || |||||| |||||||||||||||    
T  12135180 tgggatcctattgtgaatcgtattaaatctagattgtcaggttggaata 12135132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 45255060 - 45255104
Alignment:
Q  203 ggttggaatagtcgtttcctctcttttggtggccgtttggttctt 247  Q
    |||||||||||||||||| | |||||||| |||||| ||||||||    
T  45255060 ggttggaatagtcgtttcttatcttttggcggccgtctggttctt 45255104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 29509828 - 29509683
Alignment:
Q  1 ccaacggtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttat 100  Q
    ||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  29509828 ccaacggtggaaattcagagttcaacgccggtgattgcgacgccagttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactggtttat 29509729  T
Q  101 tttttagatagttttattaacaactttaggaaattgtgaaacttcc 146  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  29509728 tttttagatagttttattaacaacttaaggaaattgtgaaacttcc 29509683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 32890210 - 32890355
Alignment:
Q  1 ccaacggtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttat 100  Q
    ||||||||||||||||| ||||||||| |||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32890210 ccaacggtggaaattcatatttcgacgtcggtgattgcgacgccggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttat 32890309  T
Q  101 tttttagatagttttattaacaactttaggaaattgtgaaacttcc 146  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  32890310 tttttagatagttttattaacaactttaggaaattttgaaacttcc 32890355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 33139132 - 33139273
Alignment:
Q  4 acggtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagttta-ttt 102  Q
    ||||||||||||||||||||||| ||| ||||||| ||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  33139132 acggtggaaattcagatttcgactccgatgattgcaacgccggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttatttt 33139231  T
Q  103 tttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  33139232 tttagatagttttattaacaactttaggaacttgtgaaactt 33139273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 24966255 - 24966115
Alignment:
Q  4 acggtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttatttt 103  Q
    |||||||||| | ||||||||||||||| |||||| | ||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  24966255 acggtggaaacttagatttcgacgccggagattgcaatgccggttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttgtttt 24966156  T
Q  104 ttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  24966155 ttagatagttttattaacaactttaggaacttgtgaaactt 24966115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 159 - 259
Target Start/End: Complemental strand, 8936038 - 8935938
Alignment:
Q  159 gtttctgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgt 258  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8936038 gtttctgggaccctgttgtgaatcgtataaaaactagactgtcaggttggaatagtcgtttcctctcttttggttgccgtttggttcttctcaaatctgt 8935939  T
Q  259 g 259  Q
    |    
T  8935938 g 8935938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 159 - 259
Target Start/End: Complemental strand, 19648659 - 19648559
Alignment:
Q  159 gtttctgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgt 258  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19648659 gtttctgggaccctgttgtgaatcgtataaaatctagagtgtcaggttggaatagtcgtttcctctcttttgctggccgtttggttcttctcaaatctgt 19648560  T
Q  259 g 259  Q
    |    
T  19648559 g 19648559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 46 - 141
Target Start/End: Original strand, 50517494 - 50517589
Alignment:
Q  46 gttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaa 141  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||    
T  50517494 gttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatggatttattaacaactttaggaacttgtgaaa 50517589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 46862667 - 46862568
Alignment:
Q  46 gttagggttgcggtggtggtgttagttgacctttt-gaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  46862667 gttagggttgcggtggtagtgtttgttgacctttttgaagaaattaactagtttattttttagatagttttattaacaactttaagaacttgtgaaactt 46862568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 46287045 - 46287162
Alignment:
Q  1 ccaacggtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagttta- 99  Q
    |||||| |||||||||| |||||||| || ||||||||||||   |||||||||||||||||| |||| ||||||||||||||||||||||||||||||     
T  46287045 ccaacgatggaaattcaaatttcgactcccgtgattgcgacgtcggttagggttgcggtggtgatgtttgttgaccttttgaagaaattaactagtttat 46287144  T
Q  100 ttttttagatagttttat 117  Q
    ||||||||||||||||||    
T  46287145 ttttttagatagttttat 46287162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 35518230 - 35518147
Alignment:
Q  46 gttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttag 129  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||    
T  35518230 gttagggttgcggtggtggtatttgttgaccttttgaagaaattaactagtttatttattgaatagttttattaacaactttag 35518147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 159 - 258
Target Start/End: Complemental strand, 19115400 - 19115301
Alignment:
Q  159 gtttctgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgt 258  Q
    |||||||||| ||| ||||||||||| | ||  || ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  19115400 gtttctgggatcctattgtgaatcgtgttaaagctcgactgtcgggttggaatagtcgtttcctctcttttggtggccgcttggttcttctcaaagctgt 19115301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 159 - 258
Target Start/End: Original strand, 23872653 - 23872752
Alignment:
Q  159 gtttctgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgt 258  Q
    |||||||||| ||| ||||||||||||| || ||||||||||| |||||||||||||| || |||||||||||||| || |||||||| |||||||||||    
T  23872653 gtttctgggaacctattgtgaatcgtattaaatctagactgtcgggttggaatagtcggtttctctcttttggtggtcgcttggttctactcaaatctgt 23872752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 159 - 258
Target Start/End: Complemental strand, 55299585 - 55299486
Alignment:
Q  159 gtttctgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgt 258  Q
    |||||||||| ||| ||||||||||||| || |||||| |||| |||||||||||||| || |||||||||||||| || |||||||| |||||||||||    
T  55299585 gtttctgggaacctattgtgaatcgtattaaatctagattgtcgggttggaatagtcggtttctctcttttggtggtcgcttggttctactcaaatctgt 55299486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 159 - 258
Target Start/End: Original strand, 29552977 - 29553076
Alignment:
Q  159 gtttctgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgt 258  Q
    |||| ||||| ||| ||||||||||||| |   |||||||||| |||||||||||| ||||||| ||||||||||| |||||||||||||||||| ||||    
T  29552977 gtttttgggatcctattgtgaatcgtattagaactagactgtcgggttggaatagttgtttcctttcttttggtggtcgtttggttcttctcaaagctgt 29553076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 258
Target Start/End: Complemental strand, 20675999 - 20675900
Alignment:
Q  159 gtttctgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgt 258  Q
    |||||| ||| ||| ||||||||||||| || ||||||||||| ||||| |||||||| ||  ||||||||||||| || |||||||| |||||||||||    
T  20675999 gtttctaggaacctattgtgaatcgtattaaatctagactgtcgggttgtaatagtcggtttttctcttttggtggtcgcttggttctactcaaatctgt 20675900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 71 - 129
Target Start/End: Complemental strand, 25842679 - 25842621
Alignment:
Q  71 ttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttag 129  Q
    |||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  25842679 ttgatcttttgaagaaattaactagtttattttttggatagctttattaacaactttag 25842621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 164 - 249
Target Start/End: Original strand, 1827721 - 1827806
Alignment:
Q  164 tgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttct 249  Q
    ||||| ||| ||||||||||||| || |||||| |||| |||||| | ||||| ||||||||||| |||||||||||| |||||||    
T  1827721 tgggaacctattgtgaatcgtattaaatctagattgtctggttggcaaagtcggttcctctctttcggtggccgtttgattcttct 1827806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 144
Target Start/End: Complemental strand, 26490942 - 26490899
Alignment:
Q  101 tttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  26490942 tttttagatagttttattaacaactttaggaacttgtgaaactt 26490899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 129
Target Start/End: Original strand, 26955682 - 26955740
Alignment:
Q  71 ttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttag 129  Q
    |||| |||||||||||||||| | ||||||||||| |||||||||||||| ||||||||    
T  26955682 ttgaacttttgaagaaattaaattgtttattttttggatagttttattaaaaactttag 26955740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 40317368 - 40317295
Alignment:
Q  71 ttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||| |||||||||||||||||||||| |||||||  |||| |||||||| |||||||| || || ||||||||    
T  40317368 ttgatcttttgaagaaattaactagttcattttttgaatagatttattaataactttagaaacttctgaaactt 40317295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 40327442 - 40327369
Alignment:
Q  71 ttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||| |||||||||||||||||||||| |||||||  |||| |||||||| |||||||| || || ||||||||    
T  40327442 ttgatcttttgaagaaattaactagttcattttttgaatagatttattaataactttagaaacttctgaaactt 40327369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 255
Target Start/End: Complemental strand, 26694875 - 26694796
Alignment:
Q  176 gtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatc 255  Q
    |||||||| || || ||||||||| | |||||||||||| | || ||||||||||||||||| ||| |||| ||||||||    
T  26694875 gtgaatcgcattaaatctagactgacgggttggaatagtagatttctctcttttggtggccgcttgattctcctcaaatc 26694796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 246
Target Start/End: Complemental strand, 19756226 - 19756144
Alignment:
Q  164 tgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttct 246  Q
    ||||| ||||||||||||||||| || |||||| |||| |||||| | ||||| ||||| ||||| ||||| |||||| ||||    
T  19756226 tgggaacctgttgtgaatcgtattaaatctagattgtctggttggcaaagtcggttcctttctttcggtggtcgtttgattct 19756144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 246
Target Start/End: Original strand, 19783580 - 19783662
Alignment:
Q  164 tgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttct 246  Q
    ||||| ||||||||||||||||| || |||||| |||| |||||| | ||||| ||||| ||||| ||||| |||||| ||||    
T  19783580 tgggaacctgttgtgaatcgtattaaatctagattgtctggttggcaaagtcggttcctttctttcggtggtcgtttgattct 19783662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 4511634 - 4511593
Alignment:
Q  87 attaactagtttattttttagatagttttattaacaacttta 128  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  4511634 attaactagtttattttttagataattttattaacaaattta 4511593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 29469538 - 29469611
Alignment:
Q  71 ttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||| |||||||||| ||||||| |||||| ||||||||||||  ||| ||||  || |||||||||||    
T  29469538 ttgacctttcgaagaaattacctagtttgttttttggatagttttattctcaagtttataaacttgtgaaactt 29469611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 871954 - 871995
Alignment:
Q  100 ttttttagatagttttattaacaactttaggaaattgtgaaa 141  Q
    |||||| ||||||||||||||||| |||||||| ||||||||    
T  871954 ttttttggatagttttattaacaaatttaggaacttgtgaaa 871995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 8084566 - 8084639
Alignment:
Q  71 ttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||| |||||||||| ||||||| |||| | ||||||||||||  ||| ||||  || |||||||||||    
T  8084566 ttgacctttcgaagaaattacctagtttgttttctggatagttttattctcaagtttataaacttgtgaaactt 8084639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 24454025 - 24454070
Alignment:
Q  99 attttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||||||| ||||||||||||||||| |||||||  ||||||||||    
T  24454025 attttttatatagttttattaacaacgttaggaacgtgtgaaactt 24454070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 247
Target Start/End: Complemental strand, 34976905 - 34976817
Alignment:
Q  159 gtttctgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttctt 247  Q
    |||| ||||| ||| |||||| ||| |||||  ||||  |||| ||||||||||||| |||  | |||||||| |||||||||||||||    
T  34976905 gtttttgggaacctattgtgagtcgcataaaagctaggttgtctggttggaatagtcattttttatcttttggcggccgtttggttctt 34976817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 42937298 - 42937234
Alignment:
Q  80 tgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||||| ||| ||| |||||| ||||||||||||  ||| ||||| || |||||||||||    
T  42937298 tgaagaaattacctaatttgttttttggatagttttattctcaagtttagaaacttgtgaaactt 42937234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 16709875 - 16710015
Alignment:
Q  4 acggtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttatttt 103  Q
    |||||||||||||||||||| ||| ||||||||||||| | ||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||    
T  16709875 acggtggaaattcagatttcaacgtcggtgattgcgacaccagttagggttgcggtggtgatgtttgttgaccttttgaagaaattaacttgtttatttt 16709974  T
Q  104 ttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||| ||||||||||||||||||| |||||||||||    
T  16709975 ttagatagtcttattaacaactttaggaacttgtgaaactt 16710015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 17684111 - 17684251
Alignment:
Q  4 acggtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttatttt 103  Q
    |||||||||||||||||||| ||| ||||||||||||| | ||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||    
T  17684111 acggtggaaattcagatttcaacgtcggtgattgcgacaccagttagggttgcggtggtgatgtttgttgaccttttgaagaaattaacttgtttatttt 17684210  T
Q  104 ttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||| ||||||||||||||||||| |||||||||||    
T  17684211 ttagatagtcttattaacaactttaggaacttgtgaaactt 17684251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 43172407 - 43172543
Alignment:
Q  8 tggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttattttttag 107  Q
    ||||||||||||||||||||||| |||||||||| |  ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  43172407 tggaaattcagatttcgacgccgatgattgcgacaccggttagggttgcggtggtggtgtctgttgaccttttgaagaaattaactagtttattttttag 43172506  T
Q  108 atagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  43172507 atagttttattaacaactttacgaacttgtgaaactt 43172543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 159 - 259
Target Start/End: Complemental strand, 45993540 - 45993440
Alignment:
Q  159 gtttctgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgt 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  45993540 gtttctgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggtcgtttggttcttctcaaatctgt 45993441  T
Q  259 g 259  Q
    |    
T  45993440 g 45993440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 23017364 - 23017461
Alignment:
Q  47 ttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  23017364 ttagggttgcggtggtggtgtttgttgaccttttgaaaaaattaactagtttattttttagatagttttattaacaactttagaaacttgtgaaactt 23017461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 33 - 144
Target Start/End: Original strand, 21486502 - 21486614
Alignment:
Q  33 gattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagttta-ttttttagatagttttattaacaactttagga 131  Q
    |||| ||||||  |||||| |||| ||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21486502 gatttcgacgccggttaggattgcagtggtggtgtttgttgaccttttgaaaaaattaactagtttatttttttagatagttttattaacaactttagga 21486601  T
Q  132 aattgtgaaactt 144  Q
    | |||||||||||    
T  21486602 acttgtgaaactt 21486614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 42610892 - 42610989
Alignment:
Q  47 ttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||| || ||||||||||||| |||||||||||||| |||||||||||| || ||||||||| |||||||||||||||||||||| |||||||||||    
T  42610892 ttaggattacggtggtggtgtttgttgaccttttgaaaaaattaactagtctagtttttagatggttttattaacaactttaggaacttgtgaaactt 42610989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 128
Target Start/End: Complemental strand, 5771853 - 5771754
Alignment:
Q  28 ccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttattttttagatagttttattaacaacttt 127  Q
    |||||||| | |||||  ||||| |||||| |||||||||| | ||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||    
T  5771853 ccggtgatcgtgacgctggttagagttgcgatggtggtgtttgatgaccttttgaagaaattaac-agtttatttttttgatagttttattaaaaacttt 5771755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 159 - 254
Target Start/End: Complemental strand, 13441022 - 13440927
Alignment:
Q  159 gtttctgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaat 254  Q
    |||||||||| ||| ||||||||||||| || ||||||||||| |||||||||||||| || ||||||| |||||| || |||||||| |||||||    
T  13441022 gtttctgggaacctattgtgaatcgtattaaatctagactgtcgggttggaatagtcggtttctctcttgtggtggtcgcttggttctactcaaat 13440927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 31445773 - 31445822
Alignment:
Q  95 gtttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31445773 gtttattttttagatagttttattaacaactttaggaacttgtgaaactt 31445822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 1254215 - 1254147
Alignment:
Q  71 ttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtga 139  Q
    |||| |||||||||||| |||||| |||||||||| ||||| ||||||||||||||||| || ||||||    
T  1254215 ttgaacttttgaagaaactaactaatttattttttggataggtttattaacaactttagaaatttgtga 1254147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 246
Target Start/End: Complemental strand, 34232665 - 34232578
Alignment:
Q  159 gtttctgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttct 246  Q
    |||| ||||| ||| ||||||||||||||||  ||||  |||| |||||||||||||||||  | ||||||||||||||| |||||||    
T  34232665 gtttttgggaaccttttgtgaatcgtataaaagctaggttgtctggttggaatagtcgttttttatcttttggtggccgtctggttct 34232578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 6268851 - 6268924
Alignment:
Q  71 ttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||| |||||||| |||||||||||||| ||| ||  |||| ||||||||||||||||| || |||||||||||    
T  6268851 ttgaacttttgaaaaaattaactagtttgtttcttgaataggtttattaacaactttagaaacttgtgaaactt 6268924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 14741826 - 14741899
Alignment:
Q  71 ttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||| |||||||||| ||||||| |||||| ||||||||||||  ||| ||||| || |||||||||||    
T  14741826 ttgacctttcgaagaaattacctagtttgttttttggatagttttattctcaagtttagaaacttgtgaaactt 14741899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 4639600 - 4639527
Alignment:
Q  71 ttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||| |||||||||| ||||||| |||||| ||||||||||||  ||| ||||  || |||||||||||    
T  4639600 ttgacctttcgaagaaattacctagtttgttttttggatagttttattctcaagtttataaacttgtgaaactt 4639527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 36227332 - 36227381
Alignment:
Q  164 tgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatag 213  Q
    ||||||||| |||||||||| || |||||||||||||| |||||||||||    
T  36227332 tgggaccctattgtgaatcgcattaagtctagactgtcgggttggaatag 36227381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 33497040 - 33497004
Alignment:
Q  108 atagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||||||||||||||||||| |||||||||||    
T  33497040 atagttttattaacaactttaggaacttgtgaaactt 33497004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 17721594 - 17721509
Alignment:
Q  164 tgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttct 249  Q
    ||||| |||||||| ||||| || ||   |||| |||| |||||| | ||||| ||||| ||||||||||| ||||||||||||||    
T  17721594 tgggaacctgttgttaatcgcattaaaaatagattgtctggttggcaaagtcggttcctttcttttggtggtcgtttggttcttct 17721509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 143
Target Start/End: Complemental strand, 26201741 - 26201700
Alignment:
Q  102 ttttagatagttttattaacaactttaggaaattgtgaaact 143  Q
    |||| ||||||||||||||||| |||||||| ||||||||||    
T  26201741 ttttggatagttttattaacaattttaggaacttgtgaaact 26201700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 29968933 - 29968848
Alignment:
Q  164 tgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttct 249  Q
    ||||| ||||||||||| ||||| || |||||| || | |||||| | ||||| ||||| || || |||||||||||| |||||||    
T  29968933 tgggaacctgttgtgaaccgtattaaatctagattggctggttggcaaagtcggttcctttccttcggtggccgtttgattcttct 29968848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 49458703 - 49458843
Alignment:
Q  4 acggtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttatttt 103  Q
    |||||||||||||| || |||||| ||||||||||| |||  |||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||    
T  49458703 acggtggaaattcatatatcgacgtcggtgattgcgtcgccggttagggttgtggtggtagtgtttgttgaccttttgaagaaattaactagtttatttt 49458802  T
Q  104 ttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  49458803 ttagatagttttattaacaactttaggaacttgtgaaactt 49458843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 5 - 144
Target Start/End: Complemental strand, 7437310 - 7437171
Alignment:
Q  5 cggtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttattttt 104  Q
    ||||||||||||||||||||||| | |||||||||||||  ||||| ||||||||||||||||| ||| || |||||||| |||||||||||||||||||    
T  7437310 cggtggaaattcagatttcgacgtcagtgattgcgacgctggttagagttgcggtggtggtgtttgtttactttttgaagtaattaactagtttattttt 7437211  T
Q  105 tagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  7437210 tagatagttttattaacaactttaggaacttgttaaactt 7437171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 4962473 - 4962333
Alignment:
Q  4 acggtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttatttt 103  Q
    ||||||||||||||  |||||||  || |||||||||||   ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  4962473 acggtggaaattcatgtttcgacatcgatgattgcgacgttggttagggttgcggtggtggtgtttgttaaccttttgaagaaattaactagtttatttt 4962374  T
Q  104 ttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||||||||| ||||||||||||| |||||||||||    
T  4962373 ttagatagttttattgacaactttaggaacttgtgaaactt 4962333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 43173246 - 43173380
Alignment:
Q  10 gaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttattttttagat 109  Q
    |||| ||| |||||||||| ||||||||||| ||  ||||||||||||| || |||||| ||||||||||||||||||||||||| ||||||||||||||    
T  43173246 gaaactcatatttcgacgctggtgattgcgatgccggttagggttgcggcggcggtgtttgttgaccttttgaagaaattaactaatttattttttagat 43173345  T
Q  110 agttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||||||||||||||||| | |||||||||    
T  43173346 agttttattaacaactttaggaactggtgaaactt 43173380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 33693610 - 33693743
Alignment:
Q  11 aaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttattttttagata 110  Q
    ||||||||||||| | ||| |||||||||||||    || |||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  33693610 aaattcagatttcaatgcctgtgattgcgacgccgactacggttgcagtggtggtgtttgttgaccttttgaagaaattaagtagtttattttttagata 33693709  T
Q  111 gttttattaacaactttaggaaattgtgaaactt 144  Q
    |||||||||||||||||||||| |||||||||||    
T  33693710 gttttattaacaactttaggaacttgtgaaactt 33693743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 21386209 - 21386111
Alignment:
Q  46 gttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||| |||||||||||    
T  21386209 gttagggttgcggtggtggtgtttgatgaccttttgaagaaattaactagtttattttttggacagttttattaacaactttacgaacttgtgaaactt 21386111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 159 - 258
Target Start/End: Original strand, 6175653 - 6175752
Alignment:
Q  159 gtttctgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgt 258  Q
    |||||| ||| ||| ||||||||| ||| || ||||||||||| |||||||||||||| || |||||||||||||| || |||||||| |||||||||||    
T  6175653 gtttctaggaacctattgtgaatcatattaaatctagactgtcgggttggaatagtcggtttctctcttttggtggtcgcttggttctactcaaatctgt 6175752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 164 - 255
Target Start/End: Original strand, 48569204 - 48569295
Alignment:
Q  164 tgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatc 255  Q
    ||||| |||||||| ||||||||||| |||||| |||| |||||| ||||||| ||||| ||||||||||| |||||| |||||||||||||    
T  48569204 tgggagcctgttgttaatcgtataaaatctagattgtctggttggcatagtcggttcctttcttttggtggtcgtttgattcttctcaaatc 48569295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 30238264 - 30238192
Alignment:
Q  71 ttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||| |||||||| ||||||||||||||||||||| ||||| ||||||||||||||| | ||  ||||||||||    
T  30238264 ttgaacttttgaa-aaattaactagtttattttttggataggtttattaacaacttttgaaacctgtgaaactt 30238192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 231
Target Start/End: Original strand, 24925866 - 24925933
Alignment:
Q  164 tgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttgg 231  Q
    ||||| ||| |||||||||||||||| ||||||||||| ||||||||||  || || |||||||||||    
T  24925866 tgggatcctattgtgaatcgtataaaatctagactgtcgggttggaataaacggtttctctcttttgg 24925933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 146
Target Start/End: Original strand, 53836333 - 53836408
Alignment:
Q  71 ttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaacttcc 146  Q
    ||||||||| |||||||||| ||||||| |||||| ||||||||||||  ||| ||||  || |||||||||||||    
T  53836333 ttgacctttcgaagaaattacctagtttgttttttggatagttttattctcaagtttataaacttgtgaaacttcc 53836408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 258
Target Start/End: Original strand, 962372 - 962438
Alignment:
Q  192 ctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgt 258  Q
    ||||| |||| |||||| ||||||| ||||| |||||||||||||| ||| | ||||||||||||||    
T  962372 ctagattgtctggttggcatagtcggttcctttcttttggtggccggttgatccttctcaaatctgt 962438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 246
Target Start/End: Original strand, 34331996 - 34332078
Alignment:
Q  164 tgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttct 246  Q
    ||||| ||||||||||||||||| || |||||| |||| |||||| | ||||| ||||| ||||| ||||| |||||| ||||    
T  34331996 tgggaacctgttgtgaatcgtattaaatctagattgtctggttggcaaagtcggttcctttctttcggtggtcgtttgattct 34332078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 110
Target Start/End: Complemental strand, 9031746 - 9031707
Alignment:
Q  71 ttgaccttttgaagaaattaactagtttattttttagata 110  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  9031746 ttgaacttttgaagaaattaactagtttattttttggata 9031707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 255
Target Start/End: Complemental strand, 36709856 - 36709777
Alignment:
Q  176 gtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatc 255  Q
    |||||||| || || ||||||||||| |||||||||||| | || || ||||| |||||||||||| | || ||||||||    
T  36709856 gtgaatcgcattaaatctagactgtcgggttggaatagtagatttctttctttcggtggccgtttgatcctcctcaaatc 36709777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 255
Target Start/End: Original strand, 42674631 - 42674710
Alignment:
Q  176 gtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatc 255  Q
    |||||||| || || ||||||||| |  ||||||||||| | || ||||||||||||||||| ||| |||| ||||||||    
T  42674631 gtgaatcgcattaaatctagactgacgagttggaatagtagatttctctcttttggtggccgcttgattctcctcaaatc 42674710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 258
Target Start/End: Original strand, 12341436 - 12341530
Alignment:
Q  164 tgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgt 258  Q
    ||||| ||| |||| |||| ||||||||||||| |||| |||||| ||||| | | ||| || |||||||| || ||| | ||||||||||||||    
T  12341436 tgggagcctattgttaatcatataaagtctagattgtctggttggcatagtaggtacctttcctttggtggtcgcttgatacttctcaaatctgt 12341530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 29690976 - 29691026
Alignment:
Q  71 ttgaccttttgaagaaattaactagtttattttttagatagttttattaac 121  Q
    |||| |||||||| ||||||||| ||||||||||| ||||| |||||||||    
T  29690976 ttgaacttttgaaaaaattaacttgtttattttttggataggtttattaac 29691026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 258
Target Start/End: Original strand, 43120855 - 43120949
Alignment:
Q  164 tgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgt 258  Q
    ||||| ||| |||||||||  || || | ||||||||| |||||||||||||||||| | |||||||| || ||  |||||||| | ||||||||    
T  43120855 tgggatcctattgtgaatcagattaaatttagactgtctggttggaatagtcgtttcttatcttttggcggtcgcctggttcttttaaaatctgt 43120949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 21739669 - 21739718
Alignment:
Q  164 tgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatag 213  Q
    |||||||||||||||||  | || || |||||||||||||||||||||||    
T  21739669 tgggaccctgttgtgaacagaattaaatctagactgtcaggttggaatag 21739718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 49296489 - 49296562
Alignment:
Q  71 ttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||| ||||||||||  |||||| |||||| ||||||||||||  ||| ||||  || |||||||||||    
T  49296489 ttgacctttcgaagaaattacttagtttgttttttggatagttttattctcaagtttataaacttgtgaaactt 49296562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 21718404 - 21718360
Alignment:
Q  100 ttttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||| |||||||||||||||| |||| ||| |||||||||||    
T  21718404 ttttttatatagttttattaacaattttaagaacttgtgaaactt 21718360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 247
Target Start/End: Original strand, 46907846 - 46907934
Alignment:
Q  159 gtttctgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttctt 247  Q
    |||| ||||| ||| || |||||||||| ||  |||||||||| |||||||||||||| || |  || ||| | |||||||||||||||    
T  46907846 gtttttgggatcctattttgaatcgtattaaagctagactgtctggttggaatagtcgatttcattccttttgcggccgtttggttctt 46907934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 31846926 - 31846802
Alignment:
Q  8 tggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttattttttag 107  Q
    |||||||| ||||||| ||||| |||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31846926 tggaaatttagatttcaacgccagtgattgcgacgcttgttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttag 31846827  T
Q  108 atagttttattaacaactttaggaa 132  Q
    |||||||||||||||||||||||||    
T  31846826 atagttttattaacaactttaggaa 31846802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 9731286 - 9731422
Alignment:
Q  8 tggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttattttttag 107  Q
    ||||||||||||||| |||| || ||||||||||||   |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  9731286 tggaaattcagattttgacgtcgatgattgcgacgccgattagggttgcggtggtggtgtttgttgaccttttgaagaaattaattagtttattttttag 9731385  T
Q  108 atagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||||||||||||||||||||| || |||||||||||    
T  9731386 atagttttattaacaactttagtaatttgtgaaactt 9731422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 34342578 - 34342721
Alignment:
Q  1 ccaacggtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttat 100  Q
    ||||||||||||||||| |||||||||| ||| |||||||||   |||||||||| |||||||||||| ||||||||||| |||||||||||||||||||    
T  34342578 ccaacggtggaaattcatatttcgacgctggtaattgcgacgtcggttagggttgtggtggtggtgtttgttgaccttttcaagaaattaactagtttat 34342677  T
Q  101 tttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||||||||||||||||||||||||||   || |||||||||||    
T  34342678 tttttagatagttttattaacaactttgaaaacttgtgaaactt 34342721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 38295484 - 38295346
Alignment:
Q  7 gtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgacctttt-gaagaaattaactagtttatttttt 105  Q
    ||||||||||| ||||||| | ||||||||| |||||  ||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  38295484 gtggaaattcatatttcgatgtcggtgattgtgacgccggttagggttgcggtggtggtgtttgctgacctttttgaagaaattaactagtttatttttt 38295385  T
Q  106 agatagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  38295384 agatagttttattagcaactttaggaatttgtgaaactt 38295346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 40829971 - 40830110
Alignment:
Q  4 acggtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttatttt 103  Q
    |||||||||||||||||||| |||| | ||||||||||||  ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| ||    
T  40829971 acggtggaaattcagatttccacgctgatgattgcgacgcg-gttagggttgcagtggtagtgtttgttgaccttttgaagaaattaactagtttatgtt 40830069  T
Q  104 ttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||||| ||||||||||||||| |||||| |||||||||||    
T  40830070 ttagatggttttattaacaactataggaacttgtgaaactt 40830110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 159 - 258
Target Start/End: Complemental strand, 13551546 - 13551447
Alignment:
Q  159 gtttctgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgt 258  Q
    |||||||||| ||| ||||||||||||| || |||||||||||||||||||||||||| || || ||||||||||| || ||||||||||||||||||||    
T  13551546 gtttctgggaacctattgtgaatcgtattaaatctagactgtcaggttggaatagtcggtttctatcttttggtggtcgcttggttcttctcaaatctgt 13551447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 18727391 - 18727269
Alignment:
Q  18 gatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttattttttagatagttttat 117  Q
    |||| |||| ||| |||||| |||||  ||| ||||||||||||||||||| |  ||||||||||||||||||||||||| |||||||  ||||||||||    
T  18727391 gattgcgacaccgatgattgtgacgctggttggggttgcggtggtggtgtttgacgaccttttgaagaaattaactagttgattttttgaatagttttat 18727292  T
Q  118 taacaactttaggaaattgtgaa 140  Q
    ||||||||||| ||| |||||||    
T  18727291 taacaactttacgaacttgtgaa 18727269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 32294259 - 32294332
Alignment:
Q  71 ttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  32294259 ttgatcttttgaagaaattaactagtttattttttggatagttttattaacaactttaggaacttgtgaaactt 32294332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 258
Target Start/End: Original strand, 25380569 - 25380669
Alignment:
Q  159 gtttctgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctc-ttttggtggccgtttggttcttctcaaatctg 257  Q
    |||| ||||| ||| ||||||||||||| || |||||||||||| |||||| ||||||||| ||||| |||||| ||||| |||||||||||||||||||    
T  25380569 gtttttgggaacctattgtgaatcgtattaaatctagactgtcaagttggattagtcgttttctctctttttggcggccgcttggttcttctcaaatctg 25380668  T
Q  258 t 258  Q
    |    
T  25380669 t 25380669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 24026204 - 24026257
Alignment:
Q  76 cttttgaagaaattaactagtttattttttagatagttttattaacaactttag 129  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24026204 cttttgaagaaattaactagtttattttttggatagttttattaacaactttag 24026257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 37810587 - 37810530
Alignment:
Q  71 ttgaccttttgaagaaattaactagtttattttttagatagttttattaacaacttta 128  Q
    |||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  37810587 ttgaacttttgaagaaattaactagtttattttttggataggtttattaacaacttta 37810530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 258
Target Start/End: Complemental strand, 15018626 - 15018542
Alignment:
Q  174 ttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgt 258  Q
    ||||||||||| | ||  || || |||| ||||||||||||||||||||||||||||||||| | |||||| |||||||| ||||    
T  15018626 ttgtgaatcgtgttaaagctcgattgtcgggttggaatagtcgtttcctctcttttggtggctgcttggttgttctcaaagctgt 15018542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 18899629 - 18899556
Alignment:
Q  71 ttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||| |||||||||| ||||||| |||||| ||||||||||||  ||| ||||| || |||||||||||    
T  18899629 ttgacctttcgaagaaattacctagtttgttttttggatagttttattctcaagtttagaaacttgtgaaactt 18899556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 255
Target Start/End: Original strand, 22724654 - 22724711
Alignment:
Q  198 tgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatc 255  Q
    |||| |||||||||||| |||||||||||||||||||| | ||||||||||| |||||    
T  22724654 tgtcgggttggaatagttgtttcctctcttttggtggctgattggttcttcttaaatc 22724711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 129
Target Start/End: Original strand, 30850788 - 30850846
Alignment:
Q  71 ttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttag 129  Q
    |||| |||||||| ||||||||| | ||||||| | |||||||||||||||||||||||    
T  30850788 ttgaacttttgaataaattaacttggttattttatggatagttttattaacaactttag 30850846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 2308442 - 2308394
Alignment:
Q  71 ttgaccttttgaagaaattaactagtttattttttagatagttttatta 119  Q
    ||||||||||||||||||||  ||||||||||||| |||| ||||||||    
T  2308442 ttgaccttttgaagaaattatttagtttattttttggataattttatta 2308394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 3858367 - 3858323
Alignment:
Q  100 ttttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||||| ||||||||||||||||||| |||||| |||||||||||    
T  3858367 ttttttggatagttttattaacaactataggaacttgtgaaactt 3858323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 11233670 - 11233718
Alignment:
Q  164 tgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaata 212  Q
    |||||||||||||||||| | || || ||||||||||||||||||||||    
T  11233670 tgggaccctgttgtgaatagaattaaatctagactgtcaggttggaata 11233718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 33515389 - 33515465
Alignment:
Q  179 aatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatc 255  Q
    ||||||||||| |||||| |||| |||||| ||||||| ||||| ||||||||| | ||| || |||||| ||||||    
T  33515389 aatcgtataaaatctagattgtctggttggcatagtcggttcctttcttttggtagtcgtctgattcttcgcaaatc 33515465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 255
Target Start/End: Original strand, 8065454 - 8065533
Alignment:
Q  176 gtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatc 255  Q
    ||||||||||| || |||||| |||| |||||||||||  | || |||||||| |||||||||||| |  ||||||||||    
T  8065454 gtgaatcgtattaaatctagattgtcgggttggaatagcagatttctctctttcggtggccgtttgatcattctcaaatc 8065533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 144
Target Start/End: Complemental strand, 2308212 - 2308179
Alignment:
Q  111 gttttattaacaactttaggaaattgtgaaactt 144  Q
    |||||||||||||||||||||| |||||||||||    
T  2308212 gttttattaacaactttaggaacttgtgaaactt 2308179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 9668187 - 9668235
Alignment:
Q  164 tgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaata 212  Q
    |||||||||||||||||| | || || |||||| |||||||||||||||    
T  9668187 tgggaccctgttgtgaatagaattaaatctagattgtcaggttggaata 9668235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 15926489 - 15926525
Alignment:
Q  108 atagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||||||||||||||||||||||||  ||||||||||    
T  15926489 atagttttattaacaactttaggaacatgtgaaactt 15926525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 28399758 - 28399822
Alignment:
Q  191 tctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatc 255  Q
    ||||||||||| |||||| ||||| | || |||||||||||||| |||||| |||| || |||||    
T  28399758 tctagactgtcgggttggcatagtaggtttctctcttttggtggacgtttgattctcctaaaatc 28399822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 33411341 - 33411381
Alignment:
Q  218 ttcctctcttttggtggccgtttggttcttctcaaatctgt 258  Q
    ||||| ||||||||||| |||||||||||||| ||||||||    
T  33411341 ttcctttcttttggtggtcgtttggttcttctgaaatctgt 33411381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 49452825 - 49452682
Alignment:
Q  1 ccaacggtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttat 100  Q
    ||||||||||||| ||| |||||||||||| | ||||||||||  ||||||||||||||||| ||||| |||| | ||||||||||||||||||||||||    
T  49452825 ccaacggtggaaagtcatatttcgacgccgtttattgcgacgccggttagggttgcggtggtagtgtttgttgtcgttttgaagaaattaactagtttat 49452726  T
Q  101 tttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||||||||||||||||| |||||||| |||||||||||    
T  49452725 tttttagatagttttattaacaaatttaggaacttgtgaaactt 49452682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 25253862 - 25254008
Alignment:
Q  1 ccaacggtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagt---t 97  Q
    ||||||||||||||||| ||||||||||||||||||||||||  |  ||||||||||||||||||||| |||||||||||||||||||||||||||   |    
T  25253862 ccaacggtggaaattcatatttcgacgccggtgattgcgacgtcaaatagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttat 25253961  T
Q  98 tattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||||||||||||||||||||||||||||| | || ||| |||||||    
T  25253962 tattttttagatagttttattaacaactttggaaacttgagaaactt 25254008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 35177031 - 35176891
Alignment:
Q  4 acggtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttatttt 103  Q
    |||||||||||||||||||||||| |||||||||||||||  ||||||||| || |||||||||| |||||||||||||||||||| |||| |||| |||    
T  35177031 acggtggaaattcagatttcgacgtcggtgattgcgacgccggttagggttacgttggtggtgtttgttgaccttttgaagaaattcactaatttaattt 35176932  T
Q  104 ttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||||||||||||||| ||| ||| |||||||||||    
T  35176931 ttagatagttttattaacaacattatgaacttgtgaaactt 35176891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 7 - 144
Target Start/End: Original strand, 3593577 - 3593714
Alignment:
Q  7 gtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttatttttta 106  Q
    |||||||||||||||||||||||  |||||||||| |  ||||||||||||||| ||||||| ||| ||||||||||||||||||| |||||||||||||    
T  3593577 gtggaaattcagatttcgacgccaatgattgcgacaccggttagggttgcggtgttggtgtttgtttaccttttgaagaaattaacaagtttatttttta 3593676  T
Q  107 gatagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||||||||||||||||||||| | | |||||||||||    
T  3593677 gatagttttattaacaactttacggacttgtgaaactt 3593714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 163 - 259
Target Start/End: Original strand, 25504172 - 25504268
Alignment:
Q  163 ctgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgtg 259  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25504172 ctgggtccctgttgtgaatcgtataaaatctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgtg 25504268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 32759864 - 32759724
Alignment:
Q  4 acggtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttatttt 103  Q
    |||||| |||||||||||||||||||||||||||||||    ||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||    
T  32759864 acggtgaaaattcagatttcgacgccggtgattgcgacatcggttagggttgcgggggtggtgtttgttgaccatttgaagaaattaactagtttatttt 32759765  T
Q  104 ttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||||||||||||||||||| |||  ||| |||| ||||||    
T  32759764 ttagatagttttattaacaattttttgaacttgtaaaactt 32759724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 42304144 - 42304004
Alignment:
Q  4 acggtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttatttt 103  Q
    |||||||||||||| ||||| ||||||||||||| ||| |  ||||||||||  ||||||||||| |||||| |||||||||||||||||| ||||||||    
T  42304144 acggtggaaattcatatttcaacgccggtgattgtgacactggttagggttgttgtggtggtgtttgttgacgttttgaagaaattaactactttatttt 42304045  T
Q  104 ttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||||||||||| ||||||||||| |||||||||||    
T  42304044 ttagatagttttattaataactttaggaacttgtgaaactt 42304004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 47371332 - 47371192
Alignment:
Q  4 acggtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttatttt 103  Q
    |||||||||| | |||||||||||||||||||||| | ||  |||||||||| || ||||||||| ||||||||||||||||||||||||||||| ||||    
T  47371332 acggtggaaacttagatttcgacgccggtgattgcaatgccggttagggttgtggcggtggtgttcgttgaccttttgaagaaattaactagtttgtttt 47371233  T
Q  104 ttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||||| |||||||||||||||||| ||| |||||||||||    
T  47371232 ttagattgttttattaacaactttaagaacttgtgaaactt 47371192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 49236760 - 49236620
Alignment:
Q  4 acggtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttatttt 103  Q
    |||||| ||||||||||||||||| || ||||||| ||||  |||| |||||| |||||||| || ||||||||||| ||||||||||||||||||||||    
T  49236760 acggtgaaaattcagatttcgacgtcgatgattgcaacgctggttatggttgctgtggtggtatttgttgaccttttaaagaaattaactagtttatttt 49236661  T
Q  104 ttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||||||||||||||||||||||| || ||||||||    
T  49236660 ttagatagttttattaacaactttaggaacttatgaaactt 49236620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 28403701 - 28403603
Alignment:
Q  46 gttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  28403701 gttaggattgcggtagtggtgtttgttgaccttttgaagaaattaactagtttattttttaaatagttttattaacaactttaggaacttgtgaaactt 28403603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 47 - 119
Target Start/End: Complemental strand, 48966225 - 48966153
Alignment:
Q  47 ttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttattttttagatagttttatta 119  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48966225 ttagggttgcggtggtggtgtttgttgaccttttgaagaaattaactagtttattttttagatagttttatta 48966153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 159 - 258
Target Start/End: Complemental strand, 5498050 - 5497951
Alignment:
Q  159 gtttctgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgt 258  Q
    |||||||||| ||| ||||||||||||| || ||||||||||| |||||||||||||| || || ||||||||||| || ||||||||||||||||||||    
T  5498050 gtttctgggaacctattgtgaatcgtattaaatctagactgtcgggttggaatagtcggtttctatcttttggtggtcgcttggttcttctcaaatctgt 5497951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 159 - 258
Target Start/End: Original strand, 48072602 - 48072701
Alignment:
Q  159 gtttctgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgt 258  Q
    |||||||||| ||| ||||||||||||| || ||||||||||| |||||||||||||| || |||||||||||||| || |||||||| |||||||||||    
T  48072602 gtttctgggaacctattgtgaatcgtattaaatctagactgtcgggttggaatagtcggtttctctcttttggtggtcgcttggttctactcaaatctgt 48072701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 159 - 258
Target Start/End: Original strand, 32352488 - 32352587
Alignment:
Q  159 gtttctgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgt 258  Q
    |||||||||| ||| |||||||| |||| || ||||||||||| |||||||||||||| || |||||||||||||| || |||||||| |||||||||||    
T  32352488 gtttctgggaacctattgtgaattgtattaaatctagactgtcgggttggaatagtcggtttctctcttttggtggtcgcttggttctactcaaatctgt 32352587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 19863274 - 19863335
Alignment:
Q  83 agaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  19863274 agaaatttactagtttattttttagatagttttattaacaactttaggaacttgtgaaactt 19863335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 46042298 - 46042366
Alignment:
Q  76 cttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||| |||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  46042298 cttttgacgaaattaactagtttattttttggataggtttattaacaactttagaaaattgtgaaactt 46042366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 226316 - 226389
Alignment:
Q  71 ttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||| || || ||||||||    
T  226316 ttgaacttttgaaaaaattaactagtttattttttagataggtttattaacaactttagaaacttatgaaactt 226389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 1243007 - 1242934
Alignment:
Q  71 ttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||| |||||||||| ||||||| |||||| ||||||||||||  ||| ||||| || |||||||||||    
T  1243007 ttgacctttcgaagaaattacctagtttgttttttggatagttttattctcaagtttagaaacttgtgaaactt 1242934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 5208980 - 5208933
Alignment:
Q  71 ttgaccttttgaagaaattaactagtttattttttagatagttttatt 118  Q
    |||||||||||||||||||| ||||||| |||||| ||||||||||||    
T  5208980 ttgaccttttgaagaaattacctagtttgttttttggatagttttatt 5208933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 20796619 - 20796540
Alignment:
Q  164 tgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggt 243  Q
    |||||||||||||||||| | || || |||||| ||||||||||||||||||| || ||||| || ||||| || |||||    
T  20796619 tgggaccctgttgtgaatagaattaaatctagattgtcaggttggaatagtcgatttctctcgttcggtggtcgcttggt 20796540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 39431245 - 39431166
Alignment:
Q  164 tgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggt 243  Q
    |||||||||||||||||| | || || |||||| ||||||||||||||||||| || ||||| || ||||| || |||||    
T  39431245 tgggaccctgttgtgaatagaattaaatctagattgtcaggttggaatagtcggtttctctcgttcggtggtcgcttggt 39431166  T

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Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 244
Target Start/End: Complemental strand, 17709007 - 17708937
Alignment:
Q  174 ttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggtt 244  Q
    ||||||||||||||||  ||||  |||| ||||||||||||||||| || |||||||| |||||| |||||    
T  17709007 ttgtgaatcgtataaaagctaggttgtctggttggaatagtcgttttctatcttttggcggccgtctggtt 17708937  T

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Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 41353816 - 41353889
Alignment:
Q  71 ttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||| |||||||||| ||||||| |||||| ||||||||||||  ||| ||||  || |||||||||||    
T  41353816 ttgacctttcgaagaaattacctagtttgttttttggatagttttattctcaagtttataaacttgtgaaactt 41353889  T

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Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 11578826 - 11578779
Alignment:
Q  71 ttgaccttttgaagaaattaactagtttattttttagatagttttatt 118  Q
    ||||||||| |||||||||| ||||||| |||||| ||||||||||||    
T  11578826 ttgacctttcgaagaaattacctagtttgttttttggatagttttatt 11578779  T

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Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 244
Target Start/End: Original strand, 7395898 - 7395981
Alignment:
Q  159 gtttctgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggtt 244  Q
    ||||||| || ||| ||||||||||||| ||| ||||   ||| |||||||| |||||||| ||||| ||||| ||||||||||||    
T  7395898 gtttctgagatcctattgtgaatcgtattaaggctagg--gtctggttggaagagtcgttttctctcctttggcggccgtttggtt 7395981  T

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Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 52182484 - 52182522
Alignment:
Q  102 ttttagatagttttattaacaactttaggaaattgtgaa 140  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  52182484 tttttgatagttttattaacaactttaggaacttgtgaa 52182522  T

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Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 8147737 - 8147810
Alignment:
Q  71 ttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||| |||||||||| |||||||  ||||| ||||||||||||  ||| ||||| || |||| ||||||    
T  8147737 ttgacctttcgaagaaattacctagtttggtttttggatagttttattctcaagtttagaaacttgtaaaactt 8147810  T

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Target: scaffold0573 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 9200 - 9340
Alignment:
Q  4 acggtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttatttt 103  Q
    |||||||||||||| ||||| |||||| | |||||||| |  ||||||||||  ||||| ||||| |||| |||||||||||||||||||||||||||||    
T  9200 acggtggaaattcatatttcaacgccgtttattgcgacaccggttagggttgttgtggtagtgtttgttgtccttttgaagaaattaactagtttatttt 9299  T
Q  104 ttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  9300 ttagatagttttattaacaactttaggaacttgtgaaactt 9340  T

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Target: chr5 (Bit Score: 89; Significance: 6e-43; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 29716664 - 29716524
Alignment:
Q  4 acggtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttatttt 103  Q
    ||||||||||||||| ||||||| ||| ||||| |||||   ||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||    
T  29716664 acggtggaaattcagttttcgacaccgatgattacgacgtcggttagggttacggtggtggtgcttgttgaccttttgaagaaattaactagtttatttt 29716565  T
Q  104 ttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||||||||||| ||||||||||| ||||| |||||    
T  29716564 ttagatagttttattaaaaactttaggaacttgtgtaactt 29716524  T

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Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 126
Target Start/End: Original strand, 34218769 - 34218890
Alignment:
Q  4 acggtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttatttt 103  Q
    |||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||| ||||| | ||||||||||||||||| ||||||||    
T  34218769 acggtggaaattcagatttcgacgccggtgattgtgacgtcagttagggttgcggtggtggtgtttgttgatc-tttgaagaaattaactaatttatttt 34218867  T
Q  104 ttagatagttttattaacaactt 126  Q
     ||||||||||||| ||||||||    
T  34218868 ctagatagttttatcaacaactt 34218890  T

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Target: chr5; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 159 - 258
Target Start/End: Original strand, 22094425 - 22094524
Alignment:
Q  159 gtttctgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgt 258  Q
    |||||||||| ||||||||||||||||| ||  |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  22094425 gtttctgggatcctgttgtgaatcgtattaaagctagactgtcgggttggaatagtcgtttcctctcttttggtggccatttggttcttctcaaagctgt 22094524  T

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Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 36196075 - 36196017
Alignment:
Q  70 gttgaccttttgaagaaattaactagtttattttttagatagttttattaacaacttta 128  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36196075 gttgaacttttgaagaaattaactagtttattttttggatagttttattaacaacttta 36196017  T

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Target: chr5; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 71 - 129
Target Start/End: Complemental strand, 15286190 - 15286132
Alignment:
Q  71 ttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttag 129  Q
    |||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  15286190 ttgaacttttgaagaaattaacttgtttattttttggatagttttattaacaactttag 15286132  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 31913805 - 31913865
Alignment:
Q  84 gaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||  || |||||||||||    
T  31913805 gaaattaactagtttattttttggataggtttattaacaactttaaaaacttgtgaaactt 31913865  T

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Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 5650499 - 5650426
Alignment:
Q  71 ttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    |||||||||||||||||||| ||| ||| |||||| ||||||||||||  ||| ||||| || |||||||||||    
T  5650499 ttgaccttttgaagaaattacctaatttgtttttttgatagttttattctcaagtttagaaacttgtgaaactt 5650426  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 254
Target Start/End: Complemental strand, 27796443 - 27796353
Alignment:
Q  164 tgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaat 254  Q
    ||||| |||||||| |||||||| ||  ||||| |||| |||||| ||||||| ||||| ||||||||||| ||| |  ||||||||||||    
T  27796443 tgggagcctgttgttaatcgtattaaaactagattgtctggttggcatagtcggttcctttcttttggtggtcgtctaattcttctcaaat 27796353  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 258
Target Start/End: Original strand, 33385154 - 33385248
Alignment:
Q  164 tgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgt 258  Q
    ||||| ||| |||| |||||||||||||||||| |||| |||||| ||||| | | ||| || |||||||| || ||| | ||||||||||||||    
T  33385154 tgggagcctattgttaatcgtataaagtctagattgtctggttggcatagtaggtacctttcctttggtggtcgcttgatacttctcaaatctgt 33385248  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 249
Target Start/End: Original strand, 28534857 - 28534942
Alignment:
Q  164 tgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttct 249  Q
    ||||| |||||||| |||||||| ||   |||| ||||||||||| | ||||| ||||| ||||||||||| |||||| |||||||    
T  28534857 tgggaacctgttgttaatcgtattaaaaatagattgtcaggttggcaaagtcggttcctttcttttggtggtcgtttgattcttct 28534942  T

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Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 28622894 - 28622821
Alignment:
Q  71 ttgaccttttgaagaaattaactagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||||| |||||||||| ||||||| |||||| ||||||||||||  ||| ||||| || |||| ||||||    
T  28622894 ttgacctttcgaagaaattacctagtttgttttttggatagttttattctcaagtttagaaacttgtaaaactt 28622821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 256
Target Start/End: Complemental strand, 31865253 - 31865164
Alignment:
Q  167 gaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatct 256  Q
    |||||| ||||||||||||| || |||||  |||| |||||||| || || || ||||||||||| ||||| |||||||| || ||||||    
T  31865253 gaccctattgtgaatcgtattaaatctaggttgtcgggttggaaaagccgatttctctcttttggaggccgcttggttctacttaaatct 31865164  T

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Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 21490040 - 21490091
Alignment:
Q  92 ctagtttattttttagatagttttattaacaactttaggaaattgtgaaactt 144  Q
    ||||||| ||||||| ||||||||||||||||||||| ||| |||||||||||    
T  21490040 ctagtttttttttta-atagttttattaacaactttaagaacttgtgaaactt 21490091  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 258
Target Start/End: Original strand, 25856620 - 25856714
Alignment:
Q  164 tgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgt 258  Q
    ||||| ||| |||| || ||||||||||||||| |||| |||||| ||||| | | ||| || |||||||| || ||| |||| |||||||||||    
T  25856620 tgggagcctattgttaaacgtataaagtctagattgtctggttggcatagtaggtacctttcctttggtggtcgcttgattctgctcaaatctgt 25856714  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 234
Target Start/End: Original strand, 30509204 - 30509274
Alignment:
Q  164 tgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtgg 234  Q
    ||||| ||||| ||||||||||| || |||||| |||| || |||||||| || || ||||||||||||||    
T  30509204 tgggatcctgtcgtgaatcgtattaaatctagattgtcggggtggaatagccggtttctctcttttggtgg 30509274  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 234
Target Start/End: Original strand, 30549547 - 30549617
Alignment:
Q  164 tgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtgg 234  Q
    ||||| ||||| ||||||||||| || |||||| |||| || |||||||| || || ||||||||||||||    
T  30549547 tgggatcctgtcgtgaatcgtattaaatctagattgtcggggtggaatagccggtttctctcttttggtgg 30549617  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 23239342 - 23239257
Alignment:
Q  164 tgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttct 249  Q
    ||||| ||||||||||||||||  || |||||| |||| |||||| | ||||| ||||| ||||| ||||| |||| | |||||||    
T  23239342 tgggaacctgttgtgaatcgtactaaatctagattgtctggttggcaaagtcggttcctttctttcggtggtcgttcgattcttct 23239257  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 6050160 - 6050116
Alignment:
Q  203 ggttggaatagtcgtttcctctcttttggtggccgtttggttctt 247  Q
    |||||||||||||||||| | ||||||||||||| | ||||||||    
T  6050160 ggttggaatagtcgtttcttatcttttggtggccatctggttctt 6050116  T

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Target: scaffold0013 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 89621 - 89762
Alignment:
Q  4 acggtggaaattcagatttcgacgccggtgattgcgacgcaagttagggttgcggtggtggtgttagttgaccttttgaagaaattaactagtttatttt 103  Q
    |||||||||||||| |||||| ||  || |||| ||||||  ||||||||||| ||| |||| || |||||||||||||||||||||| |||||||||||    
T  89621 acggtggaaattcatatttcgccgtaggcgattacgacgccggttagggttgcagtgatggtctttgttgaccttttgaagaaattaaatagtttatttt 89720  T
Q  104 ttagatag-ttttattaacaactttaggaaattgtgaaactt 144  Q
    |||||||| ||||||||||||||||||||| |||||||||||    
T  89721 ttagatagtttttattaacaactttaggaacttgtgaaactt 89762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 38242 - 38295
Alignment:
Q  76 cttttgaagaaattaactagtttattttttagatagttttattaacaactttag 129  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||| |||||    
T  38242 cttttgaagaaattaactagtttattttttgaatagttttattaacaattttag 38295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1350 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 255
Target Start/End: Complemental strand, 503 - 412
Alignment:
Q  164 tgggaccctgttgtgaatcgtataaagtctagactgtcaggttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatc 255  Q
    ||||| |||||||| |||||||| || |||||| | || |||||| ||||||| |||||||| |||||||| ||  || |||||||||||||    
T  503 tgggagcctgttgttaatcgtattaaatctagattttctggttggcatagtcggttcctctcctttggtggtcgcctgattcttctcaaatc 412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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