View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_low_78 (Length: 275)
Name: NF1056_low_78
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_low_78 |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 23 - 260
Target Start/End: Original strand, 39630315 - 39630548
Alignment:
| Q |
23 |
gacaaagatgttaataaaagccattcaaacaagaaattttannnnnnnnatgaagttcgaggctcgaaatctaagaccatgagataaaggcaatacatgc |
122 |
Q |
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| T |
39630315 |
gacaaagatgttaataaaagccattcaaacaagaaattttattttttt-atgaagttcgaggctcgaaatctaagaccatgagataaaggcaatacatgc |
39630413 |
T |
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| Q |
123 |
acgaaattttannnnnnnnaattacgtcagttccatgctatcagacnnnnnnnnnnnnggatcattgttatagttttcattatcagttctatatggactc |
222 |
Q |
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| T |
39630414 |
acgaaatttta-tttttttaattacgtcagttccatgctatcacacaaaaaacaaaaaggatcattgt--tagttttcattatcagttccatatggactc |
39630510 |
T |
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| Q |
223 |
aatgtcaaaccacaaccattagctcatcattaagtttt |
260 |
Q |
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| T |
39630511 |
aacgtcaaaccacaaccattagctcatcatcaagtttt |
39630548 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 265
Target Start/End: Complemental strand, 28652323 - 28652265
Alignment:
| Q |
207 |
agttctatatggactcaatgtcaaaccacaaccattagctcatcattaagttttctgtg |
265 |
Q |
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| T |
28652323 |
agttccatatggactaaatgttaaaccacaaccattagctaatcatcaagttttttgtg |
28652265 |
T |
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