View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_low_79 (Length: 270)
Name: NF1056_low_79
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_low_79 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 19199524 - 19199751
Alignment:
| Q |
11 |
cagagaaaacatgagattttcaatggtgagattctgatcaaacaagggttctcaatagttttcatattcaatatttaatttattgtaaaataacgttgaa |
110 |
Q |
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| T |
19199524 |
cagagaaaacatgagattttcaatggtgagattctgatcaaacaagggttctcaatagttttcatattcaatatttaatttattgcaaaataacgttgaa |
19199623 |
T |
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| Q |
111 |
aaactagctttttcaatcttgttaccaccattaacatggtaaatattgtaacaataagcaagatatttatgactgcaatatatttgcaatacatgtttat |
210 |
Q |
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| T |
19199624 |
aaactagctttttcaatcttgttaccaccatttacatggtaaatattgtaacaataagcaagatatatatgactgcaatatatttgcaatacatgtttac |
19199723 |
T |
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| Q |
211 |
catccaataagatttgtgagaagaaaat |
238 |
Q |
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| T |
19199724 |
catccaataagatgtgtgagaagaaaat |
19199751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 164
Target Start/End: Original strand, 19203268 - 19203361
Alignment:
| Q |
71 |
ttcatattcaatatttaatttattgtaaaataacgttgaaaaactagctttttcaatcttgttaccaccattaacatggtaaatattgtaacaa |
164 |
Q |
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| T |
19203268 |
ttcatattcaatattcaacttattgcaaactagccttgaaaaactagcttttccaatcttgttgccaccattatcatggtaaatattgtaacaa |
19203361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 19203212 - 19203244
Alignment:
| Q |
12 |
agagaaaacatgagattttcaatggtgagattc |
44 |
Q |
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| T |
19203212 |
agagaaaacatgagattttcaatggagagattc |
19203244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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