View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1056_low_83 (Length: 265)
Name: NF1056_low_83
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_low_83 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 19199301 - 19199086
Alignment:
| Q |
1 |
tctacatcaagtaaatatttgttcaacagatatatttgtgtaagctatataaaaatagaactatagatgctcataattttcatcggtttacaaactttac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| || | |||||||||||||||| |
|
|
| T |
19199301 |
tctacatcaagtaaatatttgttcaacagatat--ttgtgtaagctatataaaaataaaact--------------ttgt----ggtttacaaactttac |
19199222 |
T |
|
| Q |
101 |
atgaacaattctgttagggtacaacttactggtaaggaggagaacaaagctgattttggtgccacaagggatcggaaaatacctatgcagaaaactcagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19199221 |
atgaacaattctgttagggtacaacttactggtaaggaggagaacaaagctgattttggtgccacaagggatcggaaaatacctatgcagaaaactcagt |
19199122 |
T |
|
| Q |
201 |
ctttcaaaggtaatgtttggttacctttttcccctt |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
19199121 |
ctttcaaaggtaatgtttggttacctttttcccctt |
19199086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 19203214 - 19202992
Alignment:
| Q |
1 |
tctacatcaagtaaatatttgttcaacagatatatttgtgtaagctatataaaaatagaactatagatgctcataattttcatcggtttacaaactttac |
100 |
Q |
| |
|
||||||| |||||||| || |||||| |||||||||| ||||||||||| |||| |||||||| ||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
19203214 |
tctacatgaagtaaattttagttcaatagatatatttttgtaagctatacaaaattagaactaaagatgctcataatattcattggtttacaaactttac |
19203115 |
T |
|
| Q |
101 |
atgaacaattctgttagggtacaacttactggtaaggaggagaacaaagctgattttggtgccacaagggatcggaaaatacctatgcagaaaactcagt |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| |||| |||||||||||| ||||||||||||| ||||| | |||| |
|
|
| T |
19203114 |
atgaacaattttgttagggtacaacttactggtacggaggagaacaaatctgatcttggcgccacaagggataggaaaatacctatacagaagaaccagt |
19203015 |
T |
|
| Q |
201 |
ctttcaaaggtaatgtttggtta |
223 |
Q |
| |
|
||||||||||| || |||||||| |
|
|
| T |
19203014 |
ctttcaaaggtgatatttggtta |
19202992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University