View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1056_low_86 (Length: 258)
Name: NF1056_low_86
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_low_86 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 22 - 258
Target Start/End: Complemental strand, 41920586 - 41920350
Alignment:
| Q |
22 |
aacaccttggagttccaactgcattaagaagagtgataactgaaggaatataaacagctccccattttgggactgcaacttcaggtaccaaaactgttgc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41920586 |
aacaccttggagttccaactgcattaagaagagtgataactgaaggaatataaacagctccccattttgggactgcaacttcaggtaccaaaactgttgc |
41920487 |
T |
|
| Q |
122 |
aggtagaacaatgcaataaaacacaaacgtattgatgtgtgctatcactttccgaacaaagaagaaactgtaaattacatgtatcttcttccacaaggac |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41920486 |
aggtagaacaatgcaataaaacacaaacgtattgatgtgtgctatcactttccgaacaaagaagaaactgtaaattacatgtatcttcttccacaaggac |
41920387 |
T |
|
| Q |
222 |
actttctgcaatgtatacacattattagcatgagtat |
258 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41920386 |
actttctgcaatgcatacacattattagcatgagtat |
41920350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 25 - 234
Target Start/End: Original strand, 26830735 - 26830944
Alignment:
| Q |
25 |
accttggagttccaactgcattaagaagagtgataactgaaggaatataaacagctccccattttgggactgcaacttcaggtaccaaaactgttgcagg |
124 |
Q |
| |
|
|||||||||||||||| ||||| | ||| ||||| | ||||| |||||||||||||||||||| ||||| |||| |||||||||| ||| |||||||| |
|
|
| T |
26830735 |
accttggagttccaacagcatttaaaagggtgatgatggaagggatataaacagctccccatttagggaccacaacctcaggtaccataacagttgcagg |
26830834 |
T |
|
| Q |
125 |
tagaacaatgcaataaaacacaaacgtattgatgtgtgctatcactttccgaacaaagaagaaactgtaaattacatgtatcttcttccacaaggacact |
224 |
Q |
| |
|
|| ||||||||||| || ||||| || |||||||| || | | |||||||||||||| |||||||||| |||| ||||||||||||||| |||||| |
|
|
| T |
26830835 |
taacacaatgcaatagaaaacaaatgtgttgatgtgggccacaatcttccgaacaaagaaaaaactgtaaacaacatatatcttcttccacaaagacact |
26830934 |
T |
|
| Q |
225 |
ttctgcaatg |
234 |
Q |
| |
|
|||||||||| |
|
|
| T |
26830935 |
ttctgcaatg |
26830944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 230
Target Start/End: Original strand, 26784058 - 26784219
Alignment:
| Q |
69 |
atataaacagctccccattttgggactgcaacttcaggtaccaaaactgttgcaggtagaacaatgcaataaaacacaaacgtattgatgtgtgctatca |
168 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||| ||||| |||| ||| |||||||||| ||||||||||| |||||||| || || ||||| | | | |
|
|
| T |
26784058 |
atataaacagttccccatttagggaccacaatctcaggcaccataacagttgcaggtaacacaatgcaatataacacaaatgtgtttatgtgaaccacaa |
26784157 |
T |
|
| Q |
169 |
ctttccgaacaaagaagaaactgtaaattacatgtatcttcttccacaaggacactttctgc |
230 |
Q |
| |
|
||||| |||||||| |||||||||| | || | | ||||||||||| |||||||||||| |
|
|
| T |
26784158 |
tcttccggacaaagaaaaaactgtaaaccatatatgttttcttccacaaagacactttctgc |
26784219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 234
Target Start/End: Original strand, 26790382 - 26790591
Alignment:
| Q |
25 |
accttggagttccaactgcattaagaagagtgataactgaaggaatataaacagctccccattttgggactgcaacttcaggtaccaaaactgttgcagg |
124 |
Q |
| |
|
||||||| |||||||| || |||||||| ||||| | ||||| | |||||||| ||||||||| ||||| |||| ||||| |||| ||| |||||||| |
|
|
| T |
26790382 |
accttggtgttccaacagctttaagaagggtgatgatggaagggacataaacagttccccatttagggaccacaacctcaggaaccataacagttgcagg |
26790481 |
T |
|
| Q |
125 |
tagaacaatgcaataaaacacaaacgtattgatgtgtgctatcactttccgaacaaagaagaaactgtaaattacatgtatcttcttccacaaggacact |
224 |
Q |
| |
|
|| | |||||||| |||||||| || | | ||| | | | || |||| |||||| |||||||||| | ||||| ||||||| |||| |||||| |
|
|
| T |
26790482 |
taacaatatgcaatagaacacaaatgtgtgtacgtgcaccacaatctttcgaataaagaaaaaactgtaaacaatatgtagcttcttcaacaaagacact |
26790581 |
T |
|
| Q |
225 |
ttctgcaatg |
234 |
Q |
| |
|
|||||||||| |
|
|
| T |
26790582 |
ttctgcaatg |
26790591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University