View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_low_9 (Length: 732)
Name: NF1056_low_9
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 321 - 704
Target Start/End: Original strand, 777305 - 777688
Alignment:
| Q |
321 |
cacattaatttgatgtcacaactcaaccacatgagctacatcgataaattcataaaaatattttttgcttctatattgatatattttgtttattaaacat |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
777305 |
cacattaatttgatgtcacaactcaaccacatgagctacatcgataaattcataaaaatattttttgcttctatcttgatatattatgtttattaaacat |
777404 |
T |
|
| Q |
421 |
ttaagatgttattttcatagtaaaagtgttaatcgttacatttagacatcaagttaaaatcttaaatctttttgatgatggttgtaaaattatcattaat |
520 |
Q |
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||||||||||| ||| |||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
777405 |
ttaagatgttagttttatagtaaaagtgttaatcgtcacatttaggcatcgagttaaaatcttaaatctttttgaggatggttgtaaaattatcattaat |
777504 |
T |
|
| Q |
521 |
gtcaattttattctgaaaaaagtaggatgtataaattttaaaacaatgtttagcgttgtagttatgtttgtataactattaagttttacactttagaaaa |
620 |
Q |
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| T |
777505 |
gtcaattttattctgaaaaaagtaggatgtataaatttcaaaacaatgtttagcgttgtagttatgtttgtataactattaagttttacactttagaaaa |
777604 |
T |
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| Q |
621 |
atttgattgtcacgatatacatttaatttgtaaaatgcatttgcatgaaaattgccaaaacggttatatgttaacgtcactact |
704 |
Q |
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| T |
777605 |
atatgattgtcacgacatacatttaatttgtaaaatgcatttgcatgaaaattgtcaaaacggttatatgttaacgtcactact |
777688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 524 - 702
Target Start/End: Complemental strand, 8458004 - 8457833
Alignment:
| Q |
524 |
aattttattctgaaaaaagtaggatgtataaattttaaaacaatgtttagcgttgtagttatgtttgtataactattaagttttacactttagaaaaatt |
623 |
Q |
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| T |
8458004 |
aattttattcagaaaaaagtaggatgtataaatttcaaaacaatgtttagcgttgcagttatgtttgtataactatta-------cactttagaaaaatt |
8457912 |
T |
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| Q |
624 |
tgattgtcacgatatacatttaatttgtaaaatgcatttgcatgaaaattgccaaaacggttatatgttaacgtcacta |
702 |
Q |
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||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
8457911 |
tgattgtcacgatgtacatttaatctgtaaaatgcatttgcatgaaaattgccaaaatggttatatgttaaggtcacta |
8457833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 324 - 527
Target Start/End: Complemental strand, 8458237 - 8458032
Alignment:
| Q |
324 |
attaatttgatgtcacaactcaaccacatgagctacatcgataaattcata-aaaatattttttgcttctatat--tgatatattttgtttattaaacat |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| ||||||| | |||||||||||||| |
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| T |
8458237 |
attaatttgatgtcacaactcaaccacatgagctacatcgataaattcatacaaaatattgtttgcctctatatcttgatatactatgtttattaaacat |
8458138 |
T |
|
| Q |
421 |
ttaagatgttattttcatagtaaaagtgttaatcgttacatttagacatcaagttaaaatcttaaatctttttgatgatggttgtaaaattatcattaat |
520 |
Q |
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| T |
8458137 |
ttaagatgttagtttaatggtaaaagtgttaattgtcacatttaggcatagagttaaaatcttaaat-tgttttaggatggttgaaaaattatcgttaat |
8458039 |
T |
|
| Q |
521 |
gtcaatt |
527 |
Q |
| |
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||||||| |
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| T |
8458038 |
gtcaatt |
8458032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 8 - 155
Target Start/End: Original strand, 776992 - 777137
Alignment:
| Q |
8 |
caccacagatgagcatatcataagcttttaaaaactgaattaaatttcttnnnnnnnnnnntagaatttaaatgttcgccatatgatttcatagttacaa |
107 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
776992 |
caccacaaatgagcatatcataagcttttaaaaactgaattaaatttcttaaaaaaaaa--tagaatttaaatgttcgccatatgatttcatagttacaa |
777089 |
T |
|
| Q |
108 |
atgaccaatttacatattttgattgcttgatcataaacataaaacaaa |
155 |
Q |
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| T |
777090 |
atgaccaatttacatattttgattgcttgatcataaacataaaacaaa |
777137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 8 - 155
Target Start/End: Complemental strand, 8458437 - 8458291
Alignment:
| Q |
8 |
caccacagatgagcatatcataagcttttaaaaactgaattaaatttcttnnnnnnnnnnntagaattt-aaatgttcgccatatgatttcatagttaca |
106 |
Q |
| |
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||||||| |||||||||||||||||||||||||| | |||| |||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
8458437 |
caccacaaatgagcatatcataagcttttaaaaatttaatttaatttcttaaaaaaaaa--tagaattttaaatgttcgccatatgatttcatagttaca |
8458340 |
T |
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| Q |
107 |
aatgaccaatttacatattttgattgcttgatcataaacataaaacaaa |
155 |
Q |
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| T |
8458339 |
aatgaccaatttacatattttgattgcttgatcataaacataaaacaaa |
8458291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 638 - 679
Target Start/End: Original strand, 818805 - 818846
Alignment:
| Q |
638 |
tacatttaatttgtaaaatgcatttgcatgaaaattgccaaa |
679 |
Q |
| |
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||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
818805 |
tacatttaatttgcaaaatgcatttgcatgaaaaatgccaaa |
818846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 580 - 680
Target Start/End: Original strand, 830213 - 830307
Alignment:
| Q |
580 |
agttatgtttgtataactattaagttttacactttagaaaaatttgattgtcacgatatacatttaatttgtaaaatgcatttgcatgaaaattgccaaa |
679 |
Q |
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||||||||||||||||| |||||||| |||||| | ||||| | || ||| || ||||||||||||| |||||||||||||||||||| || |||| |
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| T |
830213 |
agttatgtttgtataacaattaagtt--acacttaaaaaaaaatgga----cacaatgtacatttaatttgcaaaatgcatttgcatgaaaaatgtcaaa |
830306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 580 - 680
Target Start/End: Original strand, 1195393 - 1195487
Alignment:
| Q |
580 |
agttatgtttgtataactattaagttttacactttagaaaaatttgattgtcacgatatacatttaatttgtaaaatgcatttgcatgaaaattgccaaa |
679 |
Q |
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||||||||||||||||| |||||||| |||||| | ||||| | || ||| || ||||||||||||| |||||||||||||||||||| || |||| |
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| T |
1195393 |
agttatgtttgtataacaattaagtt--acacttaaaaaaaaatgga----cacaatgtacatttaatttgcaaaatgcatttgcatgaaaaatgtcaaa |
1195486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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