View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_low_94 (Length: 251)
Name: NF1056_low_94
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_low_94 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 29948111 - 29947886
Alignment:
| Q |
11 |
agaatatgcaatgacaggccatttgcttgttaaaagtgatgtttatagttatggtgttgtactgcttgaacttctaacaggaagaaagccagtggatatg |
110 |
Q |
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| T |
29948111 |
agaatatgcaatgacaggccatttgcttgttaaaagtgatgtttatagttatggtgttgtactgcttgaacttctaacaggaagaaagccagtggatatg |
29948012 |
T |
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| Q |
111 |
tctcaacctcttggagaggagaatctagtagtatgggcacgtccacttttgaaaagtagggagggtttagaacagttggtggatccgacattggctggaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29948011 |
tctcaacctcttggagaggagaatctagtagtatgggcacgtccacttttgaaaagtagggagggtttagaacagttggtggatccgacattggctggaa |
29947912 |
T |
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| Q |
211 |
cttatgactttgatgaattgacaaag |
236 |
Q |
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||||||||||||||||| |||||||| |
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| T |
29947911 |
cttatgactttgatgaaatgacaaag |
29947886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 23409467 - 23409531
Alignment:
| Q |
42 |
aaaagtgatgtttatagttatggtgttgtactgcttgaacttctaacaggaagaaagccagtgga |
106 |
Q |
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| T |
23409467 |
aaaagtgatgtttatagttttggagttgtccttttagaactcttgacaggaagaaagccagtgga |
23409531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 226
Target Start/End: Original strand, 39776749 - 39776964
Alignment:
| Q |
11 |
agaatatgcaatgacaggccatttgcttgttaaaagtgatgtttatagttatggtgttgtactgcttgaacttctaacaggaagaaagccagtggatatg |
110 |
Q |
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| T |
39776749 |
agaatatgcaatgacgggccatttactggttaaaagtgatgtttatagttacggtgttgtgcttcttgaacttctcacaggcagaaaaccagtggatatg |
39776848 |
T |
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| Q |
111 |
tctcaacctcttggagaggagaatctagtagtatgggcacgtccacttttgaaaagtagggagggtttagaacagttggtggatccgacattggctggaa |
210 |
Q |
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|||||||||| ||| |||||||||| || |||||||| |||| |||| ||||| || |||||||| ||| | |||||||| | ||||||||| |
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| T |
39776849 |
tctcaacctcagggacaggagaatcttgttacctgggcacgggcactgttgactagtagagaaggtttagagcagctagtggatccatctttggctggag |
39776948 |
T |
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| Q |
211 |
cttatgactttgatga |
226 |
Q |
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| T |
39776949 |
gttacaactttgatga |
39776964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 44888594 - 44888518
Alignment:
| Q |
36 |
cttgttaaaagtgatgtttatagttatggtgttgtactgcttgaacttctaacaggaagaaagccagtggatatgtc |
112 |
Q |
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| T |
44888594 |
cttgttaaaagtgatgtttatagctatggagttgtcttgctagaactgctcactggaaggacacctgtggatatgtc |
44888518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 5506807 - 5506701
Alignment:
| Q |
12 |
gaatatgcaatgacaggccatttgcttgttaaaagtgatgtttatagttatggtgttgtactgcttgaacttctaacaggaagaaagccagtggatatgt |
111 |
Q |
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||||||||||||||||| ||| | || | |||||||||||||| ||||| || |||||||| ||||| || ||||| || |||||||| |||||| ||| |
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| T |
5506807 |
gaatatgcaatgacaggtcatcttctcgccaaaagtgatgtttacagttacggagttgtactccttgagctcctaaccggtagaaagcctgtggatttgt |
5506708 |
T |
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| Q |
112 |
ctcaacc |
118 |
Q |
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| T |
5506707 |
cacaacc |
5506701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 36639939 - 36639992
Alignment:
| Q |
44 |
aagtgatgtttatagttatggtgttgtactgcttgaacttctaacaggaagaaa |
97 |
Q |
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| T |
36639939 |
aagtgatgtttatagttttggtgttgttcttcttgaacttttgactggaagaaa |
36639992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 2018272 - 2018317
Alignment:
| Q |
46 |
gtgatgtttatagttatggtgttgtactgcttgaacttctaacagg |
91 |
Q |
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| T |
2018272 |
gtgatgtttatagttatggtgtcatactgctagaacttctatcagg |
2018317 |
T |
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