View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_low_99 (Length: 242)
Name: NF1056_low_99
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_low_99 |
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Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 32026646 - 32026814
Alignment:
| Q |
1 |
aggtaggtcgttaaaatattacttcccattaataaagtaataattgttaattttttaatgtacatatagttacatgattaaggttcatgttattgatgaa |
100 |
Q |
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| T |
32026646 |
aggtaggtcgttaaaatattacttcccattaataaagtaataattgttaattttttaatgtacatatagttacatgattaaggttcgtgttattgatgaa |
32026745 |
T |
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| Q |
101 |
aagactctgttacattagttannnnnnncttgaacaatgttact-aaaaaacggttggtgatattattg |
168 |
Q |
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| T |
32026746 |
aagactctcttacattagttatttttttcttgaacaatgttactaaaaaaacggttggtgatattattg |
32026814 |
T |
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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 32027491 - 32027405
Alignment:
| Q |
1 |
aggtaggtcgttaaaatattacttcccattaataaagtaataattgttaattttttaatgtacatatagttacatgattaaggttcatgttatt |
94 |
Q |
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|||||||| || ||||||| | |||||||||||| || |||||||||||| |||||| ||||| |||| ||||||||||||||||||| |
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| T |
32027491 |
aggtaggttgtgaaaatatgatttcccattaatatagaaataattgttaaatttttattgtac-------tacacgattaaggttcatgttatt |
32027405 |
T |
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