View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10570_low_10 (Length: 235)
Name: NF10570_low_10
Description: NF10570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10570_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5458785 - 5459005
Alignment:
| Q |
1 |
gaagctattctcttcattggtctatacttgttggccttcggcagtgcaggaaccaaagctgcattgccatcacatggtgcagaccaatttgatgaatcag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5458785 |
gaagctattctcttcattggtctatacttgttggccttcggcagtgcaggaaccaaagctgcattgccatcacatggtgcagaccaatttgatgaatcag |
5458884 |
T |
|
| Q |
101 |
atcccaaagaagaaaagaaaatgtccacattctttaatgttctcttgcttgctgtttgcatgggtggtgcagtcagcttaactttcattgtatggataca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5458885 |
atcccaaagaagaaaagaaaatgtccacattctttaatgttctcttgcttgctgtttgcatgggtggtgcagtcagcttaactttcattgtatggataca |
5458984 |
T |
|
| Q |
201 |
aatcaacaaaggatgggattg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
5458985 |
aatcaacaaaggatgggattg |
5459005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 36330365 - 36330585
Alignment:
| Q |
1 |
gaagctattctcttcattggtctatacttgttggccttcggcagtgcaggaaccaaagctgcattgccatcacatggtgcagaccaatttgatgaatcag |
100 |
Q |
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|||||| ||||||||||| ||||||||||||||||||| || |||||||| |||||| | ||||| |||||||||| ||||| ||||||||| || |
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| T |
36330365 |
gaagcttttctcttcattagtctatacttgttggcctttggtagtgcaggcttgaaagcttctctgccagcacatggtgctgaccagtttgatgaaaaag |
36330464 |
T |
|
| Q |
101 |
atcccaaagaagaaaaga-aaatgtccacattctttaatgttctcttgcttgctgtttgcatgggtggtgcagtcagcttaactttcattgtatggatac |
199 |
Q |
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| T |
36330465 |
atcccaaagaa-acaagacaaatgtctagcttctttaatgctctcttgcttgctgtttgcattggtggttctgtcagcttaacatttaatgtatggatac |
36330563 |
T |
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| Q |
200 |
aaatcaacaaaggatgggattg |
221 |
Q |
| |
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||| || ||||||||||||||| |
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| T |
36330564 |
aaaacagcaaaggatgggattg |
36330585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 36323519 - 36323738
Alignment:
| Q |
1 |
gaagctattctcttcattggtctatacttgttggccttcggcagtgcaggaaccaaagctgcattgccatcacatggtgcagaccaatttgatgaatcag |
100 |
Q |
| |
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|||||| ||||||| |||||||| |||||||||||||| || |||||||| |||||| | ||||| |||||||||| ||||| ||||||||| || |
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| T |
36323519 |
gaagcttttctcttgattggtctctacttgttggcctttggtagtgcaggcttgaaagcttctctgccagcacatggtgctgaccagtttgatgaaaaag |
36323618 |
T |
|
| Q |
101 |
atcccaaagaagaaaaga-aaatgtccacattctttaatgttctcttgcttgctgtttgcatgggtggtgcagtcagcttaactttcattgtatggatac |
199 |
Q |
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||||||||||| | |||| ||||||||| |||||||||| |||||||||||| ||||| | |||||| | |||||||||||||| | ||||||||||| |
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| T |
36323619 |
atcccaaagaa-acaagacaaatgtccagcttctttaatggtctcttgcttgcaatttgcgttggtggttctgtcagcttaacttttaatgtatggatac |
36323717 |
T |
|
| Q |
200 |
aaatcaacaaaggatgggatt |
220 |
Q |
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|| ||||||||||||||||| |
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| T |
36323718 |
aagacaacaaaggatgggatt |
36323738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 37919867 - 37920087
Alignment:
| Q |
1 |
gaagctattctcttcattggtctatacttgttggccttcggcagtgcaggaaccaaagctgcattgccatcacatggtgcagaccaatttgatgaatcag |
100 |
Q |
| |
|
|||||| ||||||||||| |||||||| |||||||||| || |||||||| |||||| | ||||| |||||||||| ||||| ||||||||| || |
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| T |
37919867 |
gaagcttttctcttcattagtctatacgtgttggcctttggtagtgcaggcttgaaagcttctctgccagcacatggtgctgaccagtttgatgaaaaag |
37919966 |
T |
|
| Q |
101 |
atcccaaagaagaaaaga-aaatgtccacattctttaatgttctcttgcttgctgtttgcatgggtggtgcagtcagcttaactttcattgtatggatac |
199 |
Q |
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||| ||||||| | |||| ||||||| | || |||||||||||||| |||| ||||||||| | |||| | |||| |||||| || | ||||| ||||| |
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| T |
37919967 |
atctcaaagaa-acaagacaaatgtctagcttatttaatgttctcttacttgttgtttgcattgatggttctgtcaacttaacatttaatgtatagatac |
37920065 |
T |
|
| Q |
200 |
aaatcaacaaaggatgggattg |
221 |
Q |
| |
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||| || |||||| |||||||| |
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| T |
37920066 |
aaaacagcaaagggtgggattg |
37920087 |
T |
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