View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10570_low_12 (Length: 217)
Name: NF10570_low_12
Description: NF10570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10570_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 15474759 - 15474905
Alignment:
| Q |
1 |
tctacaggagtttcaatcaaaccatgatgtatacgacagaaaatgttacaaacagcagctgaattggtgaaaaaagcagcaccataaatccgatgttgtt |
100 |
Q |
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| T |
15474759 |
tctacaggagtttcaatcaaaccatgatgtatacgacagaaaatgttacaaacagcagctgaattggtgaaaaaagcagcaccataaatccgatgttgtt |
15474858 |
T |
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| Q |
101 |
tagccacatcaagtgcccaaggtagaaaagaatcatacacaatgcaa |
147 |
Q |
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| T |
15474859 |
tagccacatcaagtgcccaaggtagaaaagaatcatacacaatgcaa |
15474905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 15467211 - 15467353
Alignment:
| Q |
4 |
acaggagtttcaatcaaaccatgatgtatacgacagaaaatgttacaaacagcagctgaattggtgaaaaaagcagcaccataaatccgatgttgtttag |
103 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||| |
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| T |
15467211 |
acaggaatttcaatcaaaccatgatgtatacgacaaaaaatgttacaaacagcagctgaattagtgaaaaaagcagcaccataaataccatgttgtttag |
15467310 |
T |
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| Q |
104 |
ccacatcaagtgcccaaggtagaaaagaatcatacacaatgca |
146 |
Q |
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| T |
15467311 |
caacatcaagtgcccaaggtagaaaagaatcatagacaatgca |
15467353 |
T |
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