View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10570_low_2 (Length: 359)

Name: NF10570_low_2
Description: NF10570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10570_low_2
NF10570_low_2
[»] chr2 (5 HSPs)
chr2 (16-359)||(23147303-23147646)
chr2 (16-359)||(23559093-23559436)
chr2 (24-118)||(12093395-12093489)
chr2 (86-243)||(30464260-30464417)
chr2 (61-121)||(23929031-23929091)
[»] chr3 (1 HSPs)
chr3 (29-358)||(44807457-44807783)
[»] chr6 (1 HSPs)
chr6 (22-267)||(15934168-15934419)
[»] scaffold0008 (1 HSPs)
scaffold0008 (61-117)||(252617-252673)
[»] chr4 (4 HSPs)
chr4 (58-117)||(15427204-15427263)
chr4 (58-117)||(15433822-15433881)
chr4 (58-115)||(15454727-15454784)
chr4 (58-114)||(15462811-15462867)


Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 359
Target Start/End: Original strand, 23147303 - 23147646
Alignment:
Q  16 taggcattacgatcgcttcgagcatcatgatcatcttcagaactggaggagggccaagagcgtctgttacgtcttggtggtgacctccttgggggagatc 115  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||    
T  23147303 taggcattacgatcgcttcgagcatcatgatcatcttcaaaattggaggagggccaagagcgtctgttgcgtcttggcggtgacctccttgggagagatc 23147402  T
Q  116 gtctagaagatctccttctaggcgaccgccgactctggctaggagatctcacgctggttgagtgccttggagatctggatcgggacgggcgagggttcct 215  Q
    |||||| |||||||||||| |||||||||||||||||||||||| |||||||| || ||||||||||||||||| |||||||||||||||||||| ||||    
T  23147403 gtctaggagatctccttcttggcgaccgccgactctggctaggatatctcacgttgcttgagtgccttggagatatggatcgggacgggcgagggctcct 23147502  T
Q  216 tcctcttctgatacatggtggggaaggagcattgcggagagtgatcaactgccttttcgactgctcgaggtaagtgatgcgtcgattttgctcctcggct 315  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |  ||| || |||||||||||||||||    
T  23147503 tcctcttctgatacgtggtggggaaggagcattgcggagagtgatcaactgcctattcgactgctcgaggtaggccatgtgttgattttgctcctcggct 23147602  T
Q  316 atcgacgtttgtcgttgaatcgtgtggattaggtcgttgaccaa 359  Q
    |||||||||||| |||||| |||||||||||||| |||||||||    
T  23147603 atcgacgtttgtggttgaaccgtgtggattaggtagttgaccaa 23147646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 359
Target Start/End: Original strand, 23559093 - 23559436
Alignment:
Q  16 taggcattacgatcgcttcgagcatcatgatcatcttcagaactggaggagggccaagagcgtctgttacgtcttggtggtgacctccttgggggagatc 115  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||    
T  23559093 taggcattacgatcgcttcgagcatcatgatcatcttcaaaattggaggagggccaagagcgtctgttgcgtcttggcggtgacctccttgggagagatc 23559192  T
Q  116 gtctagaagatctccttctaggcgaccgccgactctggctaggagatctcacgctggttgagtgccttggagatctggatcgggacgggcgagggttcct 215  Q
    |||||| |||||||||||| |||||||||||||||||||||||| |||||||| || ||||||||||||||||| |||||||||||||||||||| ||||    
T  23559193 gtctaggagatctccttcttggcgaccgccgactctggctaggatatctcacgttgcttgagtgccttggagatatggatcgggacgggcgagggctcct 23559292  T
Q  216 tcctcttctgatacatggtggggaaggagcattgcggagagtgatcaactgccttttcgactgctcgaggtaagtgatgcgtcgattttgctcctcggct 315  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |  ||| || |||||||||||||||||    
T  23559293 tcctcttctgatacgtggtggggaaggagcattgcggagagtgatcaactgcctattcgactgctcgaggtaggccatgtgttgattttgctcctcggct 23559392  T
Q  316 atcgacgtttgtcgttgaatcgtgtggattaggtcgttgaccaa 359  Q
    |||||||||||| |||||| |||||||||||||| |||||||||    
T  23559393 atcgacgtttgtggttgaaccgtgtggattaggtagttgaccaa 23559436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 12093395 - 12093489
Alignment:
Q  24 acgatcgcttcgagcatcatgatcatcttcagaactggaggagggccaagagcgtctgttacgtcttggtggtgacctccttgggggagatcgtc 118  Q
    ||||||||||||| |||| |||||||| |||||| |  |||||| | |||||||| |||| |||||||||| |||| ||||||| ||||||||||    
T  12093395 acgatcgcttcgatcatcgtgatcatcctcagaattaaaggaggactaagagcgtatgttgcgtcttggtgttgacttccttggaggagatcgtc 12093489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 86 - 243
Target Start/End: Complemental strand, 30464417 - 30464260
Alignment:
Q  86 gtcttggtggtgacctccttgggggagatcgtctagaagatctccttctaggcgaccgccgactctggctaggagatctcacgctggttgagtgccttgg 185  Q
    ||||||||||||||||||||||||||||||||| |   |||||| |||| || || |||||||| |||||   |||||||||| ||   || || |  ||    
T  30464417 gtcttggtggtgacctccttgggggagatcgtcgaagggatctctttctcggtgaacgccgactgtggctcacagatctcacgatgacggaatgtcgggg 30464318  T
Q  186 agatctggatcgggacgggcgagggttccttcctcttctgatacatggtggggaagga 243  Q
    ||||| | ||| ||||||||||||| || ||||||||||| |||  | ||||||||||    
T  30464317 agatcagaatctggacgggcgagggctcattcctcttctgttacgggttggggaagga 30464260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 23929031 - 23929091
Alignment:
Q  61 gaggagggccaagagcgtctgttacgtcttggtggtgacctccttgggggagatcgtctag 121  Q
    ||||||| ||||||||||||||| ||||||||||| || |||||||| || ||||||||||    
T  23929031 gaggaggaccaagagcgtctgttgcgtcttggtggggatctccttggaggggatcgtctag 23929091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 29 - 358
Target Start/End: Complemental strand, 44807783 - 44807457
Alignment:
Q  29 cgcttcgagcatcatgatcatcttcagaactggaggagggccaagagcgtctgttacgtcttggtggtgacctccttgggggagatcgtctagaagatct 128  Q
    |||||||||||||  |||  ||||||||||||||||||| |||||| |   ||||  ||||||||||||||||||||| ||||||||||| ||  |||||    
T  44807783 cgcttcgagcatcgcgattgtcttcagaactggaggaggaccaagaac---tgttgtgtcttggtggtgacctccttgtgggagatcgtcgaggggatct 44807687  T
Q  129 ccttctaggcgaccgccgactctggctaggagatctcacgctggttgagtgccttggagatctggatcgggacgggcgagggttccttcctcttctgata 228  Q
    |||||| || || || ||    ||| | |||||||||||||||    |  |  ||||||||||||||  |||| |||||||| ||||||| |||||| ||    
T  44807686 ccttctgggtgatcgtcggtcgtggtttggagatctcacgctgacgaaacgtgttggagatctggatttggacaggcgagggctccttccccttctgtta 44807587  T
Q  229 catggtggggaaggagcattgcggagagtgatcaactgccttttcgactgctcgaggtaagtgatgcgtcgattttgctcctcggctatcgacgtttgtc 328  Q
      || ||||||||||||||||| ||||| | |||||| |||||| ||  | | ||||| ||  ||||||||||| |||||||||| ||||||||||||||    
T  44807586 agtgatggggaaggagcattgcagagagggttcaacttcctttttgatcgattgaggtcagcaatgcgtcgattctgctcctcggttatcgacgtttgtc 44807487  T
Q  329 gttgaatcgtgtggattaggtcgttgacca 358  Q
    |||||| ||||| || || || ||||||||    
T  44807486 gttgaaccgtgtagagtaagtagttgacca 44807457  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 267
Target Start/End: Complemental strand, 15934419 - 15934168
Alignment:
Q  22 ttacgatcgcttcgagcatcatgatcatcttcagaactggaggagggc------caagagcgtctgttacgtcttggtggtgacctccttgggggagatc 115  Q
    |||||||||||| |||||||| ||||||| |||||||||||||||| |      ||||||| |||||| |||||||| || || || ||||| |||||||    
T  15934419 ttacgatcgctttgagcatcacgatcatcgtcagaactggaggaggacgaggaccaagagcatctgttgcgtcttggaggggatcttcttggaggagatc 15934320  T
Q  116 gtctagaagatctccttctaggcgaccgccgactctggctaggagatctcacgctggttgagtgccttggagatctggatcgggacgggcgagggttcct 215  Q
     ||  | ||| |||||| | ||  ||||||| |   | ||||||||||||||||||   ||  | || ||||||||||||| |||||||||||   || |    
T  15934319 ttcgtggagacctccttttgggtaaccgccggcctcgactaggagatctcacgctgacagaacgtctgggagatctggatctggacgggcgagaactcat 15934220  T
Q  216 tcctcttctgatacatggtggggaaggagcattgcggagagtgatcaactgc 267  Q
    |||  ||||||||| ||||||||||||||  | ||||||| |||||||||||    
T  15934219 tccctttctgatacgtggtggggaaggagtgtcgcggagattgatcaactgc 15934168  T

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Target: scaffold0008 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 252617 - 252673
Alignment:
Q  61 gaggagggccaagagcgtctgttacgtcttggtggtgacctccttgggggagatcgt 117  Q
    ||||||| |||||||||||||||| |||||||||| || |||||||| || ||||||    
T  252617 gaggaggaccaagagcgtctgttatgtcttggtggggatctccttggaggggatcgt 252673  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 15427204 - 15427263
Alignment:
Q  58 ctggaggagggccaagagcgtctgttacgtcttggtggtgacctccttgggggagatcgt 117  Q
    ||||||| || ||||||||||||||| |||||| |||| || |||||||| |||||||||    
T  15427204 ctggagggggaccaagagcgtctgttgcgtcttcgtggggatctccttggaggagatcgt 15427263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 15433822 - 15433881
Alignment:
Q  58 ctggaggagggccaagagcgtctgttacgtcttggtggtgacctccttgggggagatcgt 117  Q
    ||||||| || ||||||||||||||| |||||| |||| || |||||||| |||||||||    
T  15433822 ctggagggggaccaagagcgtctgttgcgtcttcgtggggatctccttggaggagatcgt 15433881  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 15454727 - 15454784
Alignment:
Q  58 ctggaggagggccaagagcgtctgttacgtcttggtggtgacctccttgggggagatc 115  Q
    ||||||| || |||||||||||| || ||||||||||| || |||||||| |||||||    
T  15454727 ctggagggggaccaagagcgtctattgcgtcttggtggggatctccttggaggagatc 15454784  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 15462811 - 15462867
Alignment:
Q  58 ctggaggagggccaagagcgtctgttacgtcttggtggtgacctccttgggggagat 114  Q
    ||||||| || |||||||| |||||| ||||||||||| || |||||||| ||||||    
T  15462811 ctggagggggaccaagagcttctgttgcgtcttggtggggatctccttggaggagat 15462867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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