View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10570_low_3 (Length: 351)
Name: NF10570_low_3
Description: NF10570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10570_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 50264580 - 50264232
Alignment:
| Q |
1 |
aataaatttcattcattcctttgtttcttgcttcaatcaccaaaacctatgactgctcttacctcaaacctaaaccttatcccacaacatggtaaaaacc |
100 |
Q |
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| T |
50264580 |
aataaatttcattcattcctttgtttcttgcttcaatcaccaaaacctatgactgctcttacctcaaacctaaaccttatcccacaacatggtaaaaacc |
50264481 |
T |
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| Q |
101 |
atcaaca---ccaaggttcttgtgttgttgaggaaattaaagggctaattaacgtacacaaagatggatatatagaacgacccaacattgttccatgtgt |
197 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
50264480 |
atcaacaacaccaaggttcttgtgttgttgaggaaattaaagggctaattaaagtacataaagatggatatatagaacgacccaacattgttccatgtgt |
50264381 |
T |
|
| Q |
198 |
cacttctgatctatgtccaaaaataaatgtgacttcaagggacattatcattgacagtgttacaaacatttgggcacgtttctatgttccaaattcttca |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
50264380 |
cacttctgatctatgtccaaaaataaatgtgacttcaagggacattatcattgacagtgttacaaacatttgggcacgtttctatgttccaaattctcca |
50264281 |
T |
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| Q |
298 |
cnnnnnnnnctacctttgttagtgtattttcatggtggtggtttctgtg |
346 |
Q |
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| |||||||||||||||||||||||||||||||||||||||| |
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| T |
50264280 |
caaaaaaaactacctttgttagtgtattttcatggtggtggtttctgtg |
50264232 |
T |
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