View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10571_high_1 (Length: 333)
Name: NF10571_high_1
Description: NF10571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10571_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-175; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 14 - 331
Target Start/End: Original strand, 880820 - 881137
Alignment:
| Q |
14 |
ctttcttcttcaaaacctcaggtgccacgtaagcaggggttccacacggagttaaaagcatcccatcctctcggcgttgttctggcaacgctgagagtcc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
880820 |
ctttcttcttcaaaacctcaggtgccacgtaagcaggggttccacatggagttaaaagcatcccatcctctcggcgttgttctggcaacgctgagagtcc |
880919 |
T |
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| Q |
114 |
aaaatcggagaccttgaggtcttcgttttcatccaagagtagattttctggtttcaaatcgcgatgtgtgacaccacgactatggcaaaaatcaacagca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
880920 |
aaaatcggagaccttgaggtcttcgttttcatccaagagtagattttctggtttcaaatcgcgatgtgtgacaccacgactatggcaaaaatcaacagca |
881019 |
T |
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| Q |
214 |
ctaatgagttgttgaaaatactttctagcaacatcttcattcaattttccttttgctaccttgttgaagagttcacctccttttacatattccactacaa |
313 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
881020 |
ctaatgagttgttgaaagtactttctagcaacatcttcattcaattttccttttgctaccttgttgaagagttcacctccttttacatattccactacaa |
881119 |
T |
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| Q |
314 |
gaaagatttttccctttg |
331 |
Q |
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|||||||||||||||||| |
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| T |
881120 |
gaaagatttttccctttg |
881137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 9995043 - 9995110
Alignment:
| Q |
112 |
ccaaaatcggagaccttgaggtcttcgttttcatccaagagtagattttctggtttcaaatcgcgatg |
179 |
Q |
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| T |
9995043 |
ccaaaatctgagaccttcaaatttccgttttcatccaacagaagattttctggtttcaaatcacgatg |
9995110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 45268317 - 45268605
Alignment:
| Q |
17 |
tcttcttcaaaacctcaggtgccacgtaagcaggggttccacacggagttaaaagcatcccatcctctcggcgttgttctggcaacgctgagagtccaaa |
116 |
Q |
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||||||||||||| |||||||| || |||||||| || ||||| || || | |||||| ||||| || ||||| || || || ||||| | ||||| |
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| T |
45268317 |
tcttcttcaaaacttcaggtgcaacataagcaggagtcccacaaggtgtgagaagcattccatcggatctacgttgatcaggtaatgctgataaaccaaa |
45268416 |
T |
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| Q |
117 |
atcggagaccttgaggtcttcgttttcatccaagagtagattttctggtttcaaatcgcgatgtgtgacaccacgactatggcaaaaatcaacagcacta |
216 |
Q |
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| T |
45268417 |
atcagataccttaagatcttcattttcatccaaaagaagattctcgggtttaagatcacggtgtgtaactccccgactatgacagaaatctacagcactg |
45268516 |
T |
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| Q |
217 |
atgagttgttgaaaatactttctagcaacatcttcattcaattttccttttgctaccttgttgaagagttcacctccttttacatattc |
305 |
Q |
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|| | |||||||||||||||||| |||| || ||| | || ||| ||||| || || ||| ||| |||||||||||||| || ||||| |
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| T |
45268517 |
atcaattgttgaaaatactttctggcaatattttcttccattttacctttggcgactttggcgaaaagttcacctcctttgacgtattc |
45268605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 275
Target Start/End: Original strand, 3294060 - 3294244
Alignment:
| Q |
91 |
tgttctggcaacgctgagagtccaaaatcggagaccttgaggtcttcgttttcatccaagagtagattttctggtttcaaatcgcgatgtgtgacaccac |
190 |
Q |
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||||| ||||| || ||||| |||||||||||||| || || | ||||||||||| | | || ||| || ||||| ||||| ||||| | ||||| | |
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| T |
3294060 |
tgttcaggcaaagcagagagaccaaaatcggagactttaagattctcgttttcatcgagtaataaattctccggttttaaatcacgatgagaaacacctc |
3294159 |
T |
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| Q |
191 |
gactatggcaaaaatcaacagcactaatgagttgttgaaaatactttctagcaacatcttcattcaattttccttttgctacctt |
275 |
Q |
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|||||||||| |||| |||||||| || || ||||| || |||||||| |||| ||||| || ||||| |||||||||||||| |
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| T |
3294160 |
tactatggcaataatctacagcacttataagctgttggaagtactttcttgcaagttcttccttaaatttaccttttgctacctt |
3294244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 27312268 - 27312300
Alignment:
| Q |
27 |
aacctcaggtgccacgtaagcaggggttccaca |
59 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
27312268 |
aacctcaggtgccacgtaagcaggggttccaca |
27312300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 27006956 - 27006916
Alignment:
| Q |
139 |
ttttcatccaagagtagattttctggtttcaaatcgcgatg |
179 |
Q |
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||||||||||| ||||||||||| ||||||||||| ||||| |
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| T |
27006956 |
ttttcatccaatagtagattttcgggtttcaaatctcgatg |
27006916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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