View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10571_high_4 (Length: 260)
Name: NF10571_high_4
Description: NF10571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10571_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 12 - 223
Target Start/End: Original strand, 17824528 - 17824727
Alignment:
| Q |
12 |
agagatcagagttgaactgttacaagcaagctacatagagaaagttcttatgaagtttggaacggaatgtgcaaaaccaattacaacgccaattgcaaat |
111 |
Q |
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| T |
17824528 |
agagatcaaagttgaactgttacaagcaagctacatagagaaagttcttatgaagtttggaacggaatgtgcaaaaccaa------------ttgcaaat |
17824615 |
T |
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| Q |
112 |
catttcaaattttcataatacaatcacctcaaagtggttcgttgaaggtctaatttggaagcatgatgtatgcaatggtttgttcgaggcctaatttgac |
211 |
Q |
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| T |
17824616 |
catttcaaattttcataatacaatcacctcaaagtggtttgttcaaggtctaatttggaagcatgatgtatgcaatggtttgttcgaggcctaatttggc |
17824715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 12 - 214
Target Start/End: Original strand, 17811599 - 17811790
Alignment:
| Q |
12 |
agagatcagagttgaactgttacaagcaagctacatagagaaagttcttatgaagtttggaacggaatgtgcaaaaccaattacaacgccaattgcaaat |
111 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
17811599 |
agagatcagagttgaactcttacaagcaagctacatagagaaagttctaatgaagtttggaacggaatgtgcaaaaccaa------------ttgcaaat |
17811686 |
T |
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| Q |
112 |
catttcaaattttcataatacaatcacctcaaagtggttcgttgaaggtctaatttggaagcatgatgtatgcaatggtttg-ttcgaggcctaatttga |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
17811687 |
catttcaaattttcataatacaatcacctcaaagtggtttgttgaaggtctaatttggaagcatgatgtatgcaatggtttgtttcaaggcctaatttga |
17811786 |
T |
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