View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10571_high_6 (Length: 241)
Name: NF10571_high_6
Description: NF10571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10571_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 9373947 - 9373723
Alignment:
| Q |
1 |
ttggaaattgagatgtttcaaagaagaagagaaattactatattggatgggataagatcataagaaga---ggctttaaaaggctcgttatgtggagaca |
97 |
Q |
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| T |
9373947 |
ttggaaattgagatgtttcaaagaagaagaaaaattactatattggatgggataagatcataagaagaagaggctttaaaaggctcgttatgtggagaca |
9373848 |
T |
|
| Q |
98 |
ttttgagaaaaatcacatgctactatatatatagacnnnnnnncgagcatgctgcttattattaatatagtgagaataaactagagttagatgaggtaaa |
197 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
9373847 |
ttttgagaaaaatcacatgctactatatatatagactttttttcgagcatgctgc---ttattaatatagtgagaataaactagagttagatgaggtaaa |
9373751 |
T |
|
| Q |
198 |
ctagggttaatcggttggttagttagtt |
225 |
Q |
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||||||||||||||||||||||||||| |
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| T |
9373750 |
ttagggttaatcggttggttagttagtt |
9373723 |
T |
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