View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10571_low_1 (Length: 455)

Name: NF10571_low_1
Description: NF10571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10571_low_1
NF10571_low_1
[»] chr7 (5 HSPs)
chr7 (114-444)||(432259-432606)
chr7 (25-118)||(432643-432736)
chr7 (270-308)||(20188236-20188274)
chr7 (206-244)||(48221657-48221695)
chr7 (206-242)||(20379576-20379612)
[»] chr5 (6 HSPs)
chr5 (19-118)||(3828067-3828166)
chr5 (19-118)||(3841640-3841739)
chr5 (274-312)||(25994436-25994474)
chr5 (274-308)||(25995073-25995107)
chr5 (114-163)||(3827981-3828030)
chr5 (114-163)||(3841554-3841603)
[»] chr1 (7 HSPs)
chr1 (22-74)||(701745-701797)
chr1 (114-244)||(701895-702031)
chr1 (208-247)||(702014-702053)
chr1 (274-308)||(21485670-21485704)
chr1 (274-308)||(42294617-42294651)
chr1 (208-248)||(22605384-22605424)
chr1 (272-308)||(30858370-30858405)
[»] chr3 (3 HSPs)
chr3 (208-288)||(46183177-46183255)
chr3 (207-243)||(44836406-44836442)
chr3 (208-308)||(36182758-36182856)
[»] chr4 (5 HSPs)
chr4 (270-308)||(52031632-52031670)
chr4 (274-308)||(18845340-18845374)
chr4 (274-308)||(18846237-18846271)
chr4 (274-308)||(20779971-20780005)
chr4 (274-308)||(32303801-32303835)
[»] chr8 (3 HSPs)
chr8 (274-308)||(43532518-43532552)
chr8 (206-244)||(43640932-43640970)
chr8 (206-243)||(28707053-28707090)
[»] chr2 (1 HSPs)
chr2 (206-244)||(42119289-42119327)


Alignment Details
Target: chr7 (Bit Score: 162; Significance: 3e-86; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 114 - 444
Target Start/End: Complemental strand, 432606 - 432259
Alignment:
Q  114 ttcaaccatataagcttatgtaagcatagatgctagttgaagtgggaaag--tttgttgaagcatatagcataaggcaaagggtgttttaaaactagcgt 211  Q
    ||||||||||||||||||| || ||||| |||||||||||||||||||||  ||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  432606 ttcaaccatataagcttatatatgcatatatgctagttgaagtgggaaaggttttgttgaagcatatagcagaaggcaa-gggtgttttaaaactagcgt 432508  T
Q  212 gacttaa-------------------gtcacgctgcgcaacttaagtcacgcagggctattttggtcaggactgcagaggacgcgagtgttttgtggtgg 292  Q
    |||||||                   ||||||||||| ||||||||||||| | | ||||||||||| || |||||| |  ||||||||||||||||       
T  432507 gacttaactcacgctgcgtgagttaagtcacgctgcggaacttaagtcacgtatgactattttggtcggggctgcaggg--cgcgagtgttttgtgg--- 432413  T
Q  293 gtgaagagcagaattccaaacattatagtcttgtttcaaatctaactaagaaatcctaatagtgtgtg----tgtatatatagtaacttcttctcttcct 388  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    ||||||||||||||||||||||||||||    
T  432412 gtgaagagcagaattccaaacattacagtcttgtttcaaatctaactaagaaaccctaatagtgtgtgtgtttgtatatatagtaacttcttctcttcct 432313  T
Q  389 catttgttgcatttgcattggacggccgtagcacacaatccacaacccgttttcat 444  Q
    ||||||||||||||||||| |||||||||||  |||||||||||||| ||||||||    
T  432312 catttgttgcatttgcatttgacggccgtag--cacaatccacaacctgttttcat 432259  T

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Target: chr7; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 432736 - 432643
Alignment:
Q  25 atgatttgatattttcttttgtacgtgtctctgaaataactcaatcttatttaatggatgcttggacagaggacaaagttatatgaatattcaa 118  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| | ||||||||||||||||||    
T  432736 atgatttgatattttcttttgtacgtgtctccgaaataactcaaacttatctaatggatgcttggacagaggagagagttatatgaatattcaa 432643  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 20188274 - 20188236
Alignment:
Q  270 aggacgcgagtgttttgtggtgggtgaagagcagaattc 308  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  20188274 aggacgcgagtgttttgtgctgggtggagagcagaattc 20188236  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 48221657 - 48221695
Alignment:
Q  206 tagcgtgacttaagtcacgctgcgcaacttaagtcacgc 244  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  48221657 tagcgtgacttaagtcacgtagcgcaacttaagtcacgc 48221695  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 20379576 - 20379612
Alignment:
Q  206 tagcgtgacttaagtcacgctgcgcaacttaagtcac 242  Q
    |||||||||||||||||||  ||||||||||||||||    
T  20379576 tagcgtgacttaagtcacgtggcgcaacttaagtcac 20379612  T

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Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 3828166 - 3828067
Alignment:
Q  19 ctcagtatgatttgatattttcttttgtacgtgtctctgaaataactcaatcttatttaatggatgcttggacagaggacaaagttatatgaatattcaa 118  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||| | |||| ||||||||||||||||| ||||||||||||||||||    
T  3828166 ctcagtatgatttgatattttcttttgtatgtgtctccgaaataactcaaacttatctgatgggtgcttggacagaggacagagttatatgaatattcaa 3828067  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 3841739 - 3841640
Alignment:
Q  19 ctcagtatgatttgatattttcttttgtacgtgtctctgaaataactcaatcttatttaatggatgcttggacagaggacaaagttatatgaatattcaa 118  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||| | |||| ||||||||||||||||| ||||||||||||||||||    
T  3841739 ctcagtatgatttgatattttcttttgtatgtgtctccgaaataactcaaacttatctgatgggtgcttggacagaggacagagttatatgaatattcaa 3841640  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 312
Target Start/End: Complemental strand, 25994474 - 25994436
Alignment:
Q  274 cgcgagtgttttgtggtgggtgaagagcagaattccaaa 312  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  25994474 cgcgagtgttttgtgctgggtgaagagcagaattccaaa 25994436  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 308
Target Start/End: Original strand, 25995073 - 25995107
Alignment:
Q  274 cgcgagtgttttgtggtgggtgaagagcagaattc 308  Q
    ||||||||||||||| |||||||||||||||||||    
T  25995073 cgcgagtgttttgtgctgggtgaagagcagaattc 25995107  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 3828030 - 3827981
Alignment:
Q  114 ttcaaccatataagcttatgtaagcatagatgctagttgaagtgggaaag 163  Q
    ||||||||||||||||||| || ||| | ||||||| |||||||||||||    
T  3828030 ttcaaccatataagcttatatatgcacatatgctagctgaagtgggaaag 3827981  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 3841603 - 3841554
Alignment:
Q  114 ttcaaccatataagcttatgtaagcatagatgctagttgaagtgggaaag 163  Q
    ||||||||||||||||||| || ||| | ||||||| |||||||||||||    
T  3841603 ttcaaccatataagcttatatatgcacatatgctagctgaagtgggaaag 3841554  T

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Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 701745 - 701797
Alignment:
Q  22 agtatgatttgatattttcttttgtacgtgtctctgaaataactcaatcttat 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  701745 agtatgatttgatattttcttttgtacgtgtctctgaaataactcaaacttat 701797  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 244
Target Start/End: Original strand, 701895 - 702031
Alignment:
Q  114 ttcaaccatataagcttatgtaagcatagatgctagttgaagtgggaaagttt-------gttgaagcatatagcataaggcaaagggtgttttaaaact 206  Q
    ||||||||||||||||||| || ||||| ||||||| |||||||| |||| ||       | |||||||||||||| ||||||| ||||||||||||| |    
T  701895 ttcaaccatataagcttatatatgcatatatgctagctgaagtggaaaaggtttcgaactgctgaagcatatagcagaaggcaa-gggtgttttaaaatt 701993  T
Q  207 agcgtgacttaagtcacgctgcgcaacttaagtcacgc 244  Q
    || ||||||||| | | ||||||  | |||||||||||    
T  701994 agtgtgacttaacttatgctgcgtgagttaagtcacgc 702031  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 702014 - 702053
Alignment:
Q  208 gcgtgacttaagtcacgctgcgcaacttaagtcacgcagg 247  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  702014 gcgtgagttaagtcacgctgcgcaacttaaatcacgcagg 702053  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 308
Target Start/End: Original strand, 21485670 - 21485704
Alignment:
Q  274 cgcgagtgttttgtggtgggtgaagagcagaattc 308  Q
    ||||||||||||||| |||||||||||||||||||    
T  21485670 cgcgagtgttttgtgctgggtgaagagcagaattc 21485704  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 308
Target Start/End: Original strand, 42294617 - 42294651
Alignment:
Q  274 cgcgagtgttttgtggtgggtgaagagcagaattc 308  Q
    ||||||||||||||| |||||||||||||||||||    
T  42294617 cgcgagtgttttgtgttgggtgaagagcagaattc 42294651  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 22605424 - 22605384
Alignment:
Q  208 gcgtgacttaagtcacgctgcgcaacttaagtcacgcaggg 248  Q
    ||||||||||||||||||||||| |||||| ||||| ||||    
T  22605424 gcgtgacttaagtcacgctgcgcgacttaactcacgtaggg 22605384  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 30858405 - 30858370
Alignment:
Q  272 gacgcgagtgttttgtggtgggtgaagagcagaattc 308  Q
    |||||||||||||||||||||| ||||||||||||||    
T  30858405 gacgcgagtgttttgtggtggg-gaagagcagaattc 30858370  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 46183177 - 46183255
Alignment:
Q  208 gcgtgacttaagtcacgctgcgcaacttaagtcacgcagggctattttggtcaggactgcagaggacgcgagtgttttgtg 288  Q
    |||||| |||| ||||||||| ||||||| |||||| |||| ||||||||||||| ||||||||  |||||||||||||||    
T  46183177 gcgtgagttaaatcacgctgcacaacttacgtcacgtaggggtattttggtcagggctgcagag--cgcgagtgttttgtg 46183255  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 44836406 - 44836442
Alignment:
Q  207 agcgtgacttaagtcacgctgcgcaacttaagtcacg 243  Q
    ||||||||||||||||||| |||||||||||||||||    
T  44836406 agcgtgacttaagtcacgcagcgcaacttaagtcacg 44836442  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 308
Target Start/End: Complemental strand, 36182856 - 36182758
Alignment:
Q  208 gcgtgacttaagtcacgctgcgcaacttaagtcacgcagggctattttggtcaggactgcagaggacgcgagtgttttgtggtgggtgaagagcagaatt 307  Q
    |||||| |||||||||||||||  |||||| ||||||||||  ||||||| || | ||  | ||| |||||||||||||||  ||| |||||||| ||||    
T  36182856 gcgtgagttaagtcacgctgcgtgacttaactcacgcagggtcattttggacatggct--acagggcgcgagtgttttgtgcagggggaagagcaaaatt 36182759  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 52031670 - 52031632
Alignment:
Q  270 aggacgcgagtgttttgtggtgggtgaagagcagaattc 308  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  52031670 aggacgcgagtgttttgtgctgggtgaagagcagaattc 52031632  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 308
Target Start/End: Complemental strand, 18845374 - 18845340
Alignment:
Q  274 cgcgagtgttttgtggtgggtgaagagcagaattc 308  Q
    ||||||||||||||| |||||||||||||||||||    
T  18845374 cgcgagtgttttgtgctgggtgaagagcagaattc 18845340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 308
Target Start/End: Original strand, 18846237 - 18846271
Alignment:
Q  274 cgcgagtgttttgtggtgggtgaagagcagaattc 308  Q
    ||||||||||||||| |||||||||||||||||||    
T  18846237 cgcgagtgttttgtgctgggtgaagagcagaattc 18846271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 308
Target Start/End: Original strand, 20779971 - 20780005
Alignment:
Q  274 cgcgagtgttttgtggtgggtgaagagcagaattc 308  Q
    ||||||||||||||| |||||||||||||||||||    
T  20779971 cgcgagtgttttgtgctgggtgaagagcagaattc 20780005  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 308
Target Start/End: Complemental strand, 32303835 - 32303801
Alignment:
Q  274 cgcgagtgttttgtggtgggtgaagagcagaattc 308  Q
    ||||||||||||||| |||||||||||||||||||    
T  32303835 cgcgagtgttttgtgttgggtgaagagcagaattc 32303801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 308
Target Start/End: Original strand, 43532518 - 43532552
Alignment:
Q  274 cgcgagtgttttgtggtgggtgaagagcagaattc 308  Q
    ||||||||||||||| |||||||||||||||||||    
T  43532518 cgcgagtgttttgtgctgggtgaagagcagaattc 43532552  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 43640932 - 43640970
Alignment:
Q  206 tagcgtgacttaagtcacgctgcgcaacttaagtcacgc 244  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  43640932 tagcgtgacttaagtcacgtagcgcaacttaagtcacgc 43640970  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 28707053 - 28707090
Alignment:
Q  206 tagcgtgacttaagtcacgctgcgcaacttaagtcacg 243  Q
    |||||||||||||||||||  |||||||||||||||||    
T  28707053 tagcgtgacttaagtcacgtagcgcaacttaagtcacg 28707090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 42119327 - 42119289
Alignment:
Q  206 tagcgtgacttaagtcacgctgcgcaacttaagtcacgc 244  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  42119327 tagcgtgacttaagtcacgtagcgcaacttaagtcacgc 42119289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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