View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10571_low_3 (Length: 317)
Name: NF10571_low_3
Description: NF10571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10571_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 313
Target Start/End: Complemental strand, 14783049 - 14782754
Alignment:
| Q |
18 |
atctcttactctttgttggttcaacctcatcaagtttactctcaaaatactatttcatccacaaaggttcaagcaaatgggtctcaacttgggttcaatg |
117 |
Q |
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| T |
14783049 |
atctcttactctttgttggttcaatctcatcaagtttactctcaaaatactatttcatccacaaaggttcaagcaaatgggtctcaacttgggttcaatg |
14782950 |
T |
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| Q |
118 |
tgctggcttccctctcttgatcatcccaatttttctcccttatctcttcaatctcaccaaaagaaaccctttcactgatttcacaccaaaaatgttaacc |
217 |
Q |
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| T |
14782949 |
tgctggcttccctctcttgatcatcccaatttttctcccttatctcttcaatctcaccaaaagaaaccctttcactgatttcacaccgaaaatgttaacc |
14782850 |
T |
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| Q |
218 |
ctatcaatttttgttggtatcatgttagggtttaacaatcttttaatctcatggggtgttgcatatctacctgtttcaacttcagcacctttgcta |
313 |
Q |
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| T |
14782849 |
ctatcaatttttgttggtatcatgttagggtttaacaatcttttaatctcatggggtgttgcatatctacctgtttcaacttcagcacttttgcta |
14782754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 14775146 - 14775077
Alignment:
| Q |
47 |
tcaagtttactctcaaaatactatttcatccacaaaggttcaagcaaatgggtctcaacttgggttcaat |
116 |
Q |
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||||||||||||||||| |||||||| ||||| |||||||| || | |||||| |||||||||||||||| |
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| T |
14775146 |
tcaagtttactctcaaagtactattttatccataaaggttctagtagatgggtttcaacttgggttcaat |
14775077 |
T |
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