View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10571_low_5 (Length: 271)

Name: NF10571_low_5
Description: NF10571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10571_low_5
NF10571_low_5
[»] chr4 (11 HSPs)
chr4 (41-260)||(8040925-8041144)
chr4 (35-241)||(8417059-8417255)
chr4 (41-165)||(8411460-8411584)
chr4 (29-256)||(9138132-9138340)
chr4 (41-199)||(43144043-43144201)
chr4 (41-135)||(8035636-8035730)
chr4 (45-256)||(8404434-8404648)
chr4 (190-260)||(8035562-8035632)
chr4 (38-96)||(8358836-8358894)
chr4 (78-183)||(8418917-8419022)
chr4 (46-116)||(9576690-9576762)
[»] chr2 (2 HSPs)
chr2 (42-256)||(33084607-33084821)
chr2 (48-96)||(24845660-24845708)
[»] chr7 (1 HSPs)
chr7 (42-256)||(5476994-5477211)


Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 41 - 260
Target Start/End: Complemental strand, 8041144 - 8040925
Alignment:
Q  41 ggaagcttcaatcttcttaagatggctgcaagtgctggccaatgtaaagattttgagatttgactattctgtcattgaaacaatacaaaaggtaggtgac 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8041144 ggaagcttcaatcttcttaagatggctgcaagtgctggccaatgtaaagattttgagatttgactattctgtcattgaaacaatacaaaaggtaggtgac 8041045  T
Q  141 tgttgtgtactttgacatctatattttgattacacaaacatttgggtccttgaatatgttaatccgtgtaagtagtctttgaatgtattacaaaaacata 240  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8041044 tgttgtgtactttcacatctatattttgattacacaaacatttgggtccttgaatatgttaatccgtgtaagtagtctttgaatgtattacaaaaacata 8040945  T
Q  241 tccgaatttgtcattttctt 260  Q
    ||||||||||||||||||||    
T  8040944 tccgaatttgtcattttctt 8040925  T

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Target: chr4; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 35 - 241
Target Start/End: Original strand, 8417059 - 8417255
Alignment:
Q  35 tatcggggaagcttcaatcttcttaagatggctgcaagtgctggccaatgtaaagattttgagatttgactattctgtcattgaaacaatacaaaaggta 134  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| | ||| || | ||||  ||||||| ||||| || |||    
T  8417059 tatcggggaagcttcaatcttcttaagatggctgcaagtgtttgccaatgtaaagattttgaaagttggctctgctgttcttgaaacgatacacaatgta 8417158  T
Q  135 ggtgactgttgtgtactttgacatctatattttgattacacaaacatttgggtccttgaatatgttaatccgtgtaagtagtctttgaatgtattacaaa 234  Q
     |||| |          || |||| ||||||||| |||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8417159 agtgaat----------ttcacatatatattttggttacacaatcatttaggtccttgaatatgttaatcggtgtaagtagtctttgaatgtattacaaa 8417248  T

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Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 41 - 165
Target Start/End: Original strand, 8411460 - 8411584
Alignment:
Q  41 ggaagcttcaatcttcttaagatggctgcaagtgctggccaatgtaaagattttgagatttgactattctgtcattgaaacaatacaaaaggtaggtgac 140  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||| |  ||||||| || ||||||||||| ||||| |||||    
T  8411460 ggaagcttcaatcttcgtaagatggctgcaagtgcttgccaatgtaaagattttgaaatttggcggttctgtccttcaaacaatacaagaggtaagtgac 8411559  T
Q  141 tgttgtgtactttgacatctatatt 165  Q
    | | ||||||||| |||||||||||    
T  8411560 tttagtgtactttcacatctatatt 8411584  T

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Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 29 - 256
Target Start/End: Complemental strand, 9138340 - 9138132
Alignment:
Q  29 ttcctatatcggggaagcttcaatcttcttaagatggctgcaagtgctggccaatgtaaagattttgagatttgactattctgtcattgaaacaatacaa 128  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||  |||||  ||| ||||| |||| | |||||||    
T  9138340 ttccaataacggggaagcttcaatcttcttaagatggctgcaagtgcttgccaatgtcaagattttggaatttggttatgctgtctttgagaaaatacaa 9138241  T
Q  129 aaggtaggtgactgttgtgtactttgacatctatattttgattacacaaacatttgggtccttgaatatgttaatccgtgtaagtagtctttgaatgtat 228  Q
    || ||| || ||| | |||||||||                   ||||| ||||| ||||||||||||||||  || |||| ||||||||||||||||||    
T  9138240 aatgtaagtcactttagtgtacttt-------------------cacaatcattttggtccttgaatatgttggtcggtgttagtagtctttgaatgtat 9138160  T
Q  229 tacaaaaacatatccgaatttgtcattt 256  Q
    |||||||||||||| ||| |||||||||    
T  9138159 tacaaaaacatatctgaacttgtcattt 9138132  T

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Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 41 - 199
Target Start/End: Complemental strand, 43144201 - 43144043
Alignment:
Q  41 ggaagcttcaatcttcttaagatggctgcaagtgctggccaatgtaaagattttgagatttgactattctgtcattgaaacaatacaaaaggtaggtgac 140  Q
    ||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| | |||  |||||| ||||| ||||||||||||| ||| || ||    
T  43144201 ggaagcttcaaccttcttaagatggctgcaagtgcttgccaacgtaaagattttgaaaattggttattctctcattcaaacaatacaaaatgtaagttac 43144102  T
Q  141 tgttgtgtactttgacatctatattttgattacacaaacatttgggtccttgaatatgt 199  Q
    | |  | |||||| || ||| ||||||||||| ||||  ||||||||| |||| |||||    
T  43144101 tttaatatactttcacctctttattttgattatacaattatttgggtctttgagtatgt 43144043  T

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Target: chr4; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 41 - 135
Target Start/End: Complemental strand, 8035730 - 8035636
Alignment:
Q  41 ggaagcttcaatcttcttaagatggctgcaagtgctggccaatgtaaagattttgagatttgactattctgtcattgaaacaatacaaaaggtag 135  Q
    ||||||||  ||||||||||  |||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||| ||||| ||||||||||    
T  8035730 ggaagctttgatcttcttaaattggctgcaagtgcttgccaatgtaaagattttgaaatttggctattctgtcattgatacaatccaaaaggtag 8035636  T

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Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 256
Target Start/End: Original strand, 8404434 - 8404648
Alignment:
Q  45 gcttcaatcttcttaagatggctgcaagtgctggccaatgtaaagattttgagatttgactattctgtcattgaaacaatacaaaaggtaggtgactgtt 144  Q
    |||||| |||||||||| ||||| |||||||| ||||| ||||||||||||| | |||  || ||||||||| || ||||| |  | ||| || ||| |     
T  8404434 gcttcagtcttcttaagttggcttcaagtgcttgccaacgtaaagattttgaaaattggttactctgtcattcaagcaatagactatgtaagtcacttta 8404533  T
Q  145 gtgtactttgacatctatattttga-ttacacaaacatttgggtccttgaatatgttaatccgtgtaa--gtagtctttgaatgtattacaaaaacatat 241  Q
    || |||||| || ||| |||||||| ||| |||| ||| ||||||||| |||||||||  |  ||| |  |||||||||||||||||||||||||||| |    
T  8404534 gtatactttcacttctttattttgatttaaacaatcatctgggtccttaaatatgttagacgatgtcagcgtagtctttgaatgtattacaaaaacattt 8404633  T
Q  242 ccgaatttgtcattt 256  Q
      |||| ||||||||    
T  8404634 atgaatctgtcattt 8404648  T

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Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 8035632 - 8035562
Alignment:
Q  190 ttgaatatgttaatccgtgtaagtagtctttgaatgtattacaaaaacatatccgaatttgtcattttctt 260  Q
    |||||||||||| |  |||| ||||||||||||||||||||| |||||||||| ||| |||||||||||||    
T  8035632 ttgaatatgttagttggtgttagtagtctttgaatgtattacgaaaacatatctgaacttgtcattttctt 8035562  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 8358894 - 8358836
Alignment:
Q  38 cggggaagcttcaatcttcttaagatggctgcaagtgctggccaatgtaaagattttga 96  Q
    |||| |||||||||||||||||| ||||||||||||||| ||||||||  |||||||||    
T  8358894 cgggaaagcttcaatcttcttaaaatggctgcaagtgcttgccaatgtcgagattttga 8358836  T

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Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 183
Target Start/End: Original strand, 8418917 - 8419022
Alignment:
Q  78 gccaatgtaaagattttgagatttgactattctgtcattgaaacaatacaaaaggtaggtgactgttgtgtactttgacatctatattttgattacacaa 177  Q
    ||||| ||||||||||||  |||||  |||  | ||||| |||||||| |||| ||| |||||| | ||||||||| |||| ||||||||||||||||||    
T  8418917 gccaacgtaaagattttggaatttggttatggtatcattcaaacaataaaaaatgtaagtgactttagtgtactttcacatatatattttgattacacaa 8419016  T
Q  178 acattt 183  Q
     |||||    
T  8419017 tcattt 8419022  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 9576762 - 9576690
Alignment:
Q  46 cttcaatcttcttaagat--ggctgcaagtgctggccaatgtaaagattttgagatttgactattctgtcatt 116  Q
    |||||||||||||| |||  ||||||||||||| |||||||| |||||||||| | || |  |||||||||||    
T  9576762 cttcaatcttcttaggatatggctgcaagtgcttgccaatgtcaagattttgaaacttaataattctgtcatt 9576690  T

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Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 42 - 256
Target Start/End: Original strand, 33084607 - 33084821
Alignment:
Q  42 gaagcttcaatcttcttaagatggctgcaagtgctggccaatgtaaagattttgagatttgactattctgtcattgaaacaatacaaaaggtaggtgact 141  Q
    ||||||||||||||| |||||||||||||||||||  |||||||||||||||||  |||||  |||||| ||||||| | ||||||||| ||| ||||||    
T  33084607 gaagcttcaatcttcctaagatggctgcaagtgctttccaatgtaaagattttggaatttggttattctatcattgagaaaatacaaaatgtaagtgact 33084706  T
Q  142 gttgtgtactttgacatctatattttgattacacaaacatttgggtccttgaatatgttaatccgtgtaagtagtctttgaatgtattacaaaaacatat 241  Q
     | |||||||||  |||||||||||||||||||||| |||||||||| |||||||||||| || |||| ||||||||| || ||||||||||||||||||    
T  33084707 ttagtgtactttcgcatctatattttgattacacaatcatttgggtcgttgaatatgttagtcggtgttagtagtcttcgattgtattacaaaaacatat 33084806  T
Q  242 ccgaatttgtcattt 256  Q
    | ||| |||||||||    
T  33084807 ctgaaattgtcattt 33084821  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 24845660 - 24845708
Alignment:
Q  48 tcaatcttcttaagatggctgcaagtgctggccaatgtaaagattttga 96  Q
    ||||||||||||| |||||||||||||||  ||||||| ||||||||||    
T  24845660 tcaatcttcttaaaatggctgcaagtgctttccaatgtgaagattttga 24845708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 42 - 256
Target Start/End: Original strand, 5476994 - 5477211
Alignment:
Q  42 gaagcttcaatcttcttaagatggctgcaagtgctggccaatgtaaagattttgagatttgactattctgtcattgaaacaatacaaaaggtaggtgact 141  Q
    ||||||||| |||||||||| ||||| |||||||| || || ||||||||||||| | |||  || ||| ||||| || ||||| | || ||| || |||    
T  5476994 gaagcttcagtcttcttaagttggcttcaagtgcttgcgaacgtaaagattttgaaaattggttactctatcattcaagcaatagacaatgtaagtcact 5477093  T
Q  142 gttgtgtactttgacatctatattttgatt-acacaaacatttgggtccttgaatatgttaatccgtgtaa--gtagtctttgaatgtattacaaaaaca 238  Q
     | || |||||| || ||| |||||||||| | |||| ||||||||||||| |||||||||  |  || ||  |||||||||||||||||||||||||||    
T  5477094 ctagtatactttcacttctttattttgattaaaacaatcatttgggtccttaaatatgttagacgatgcaagtgtagtctttgaatgtattacaaaaaca 5477193  T
Q  239 tatccgaatttgtcattt 256  Q
    | |  |||| ||||||||    
T  5477194 tctatgaatctgtcattt 5477211  T

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