View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10572_1 (Length: 470)

Name: NF10572_1
Description: NF10572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10572_1
NF10572_1
[»] chr6 (5 HSPs)
chr6 (9-470)||(34795750-34796217)
chr6 (407-470)||(34780902-34780965)
chr6 (414-468)||(34771411-34771465)
chr6 (260-333)||(34780983-34781054)
chr6 (220-252)||(34771497-34771529)


Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 9 - 470
Target Start/End: Complemental strand, 34796217 - 34795750
Alignment:
Q  9 gaagaatatgcaatgtaatgtaacaactaagttaagaaccttctcaatagttaagatcatgaacatgaccatgaaatcaaaacatgttcacataattaac 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34796217 gaagaaaatgcaatgtaatgtaacaactaagttaagaaccttctcaatagttaagatcatgaacatgaccatgaaatcaaaacatgttcacataattaac 34796118  T
Q  109 atcnnnnnnnnnnnnnnnnnntgcatcaacaaagaaatgtaagaattgatagatgatgaagatgaaaataataggtaacaacctataaagcaataaacag 208  Q
    |||                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34796117 atcaaaagaaaaaaagaaaaatgcatcaacaaagaaatgtaagaattgatagatgatgaagatgaaaataataggtaacaacctataaagcaataaacag 34796018  T
Q  209 aagagtgtgaatgtgaatgtgaat------atgcatatgaatgtgtgtgttgaagtaaagtaacaatatatagagaggtaagtgatggcattggtcaggt 302  Q
    ||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34796017 aagagtgtgaatgtgaatgtgaatgtgaatatgcatatgaatgtgtgtgttgaagtaaagtaacaatatatagagaggtaagtgatggcattggtcaggt 34795918  T
Q  303 aacaagtaacaaattatgaagtaaaaatgaataaagtaaccgtatgaacaggtaataaagtaaccatattcaaaataataattcnnnnnnnnnnnnnnnn 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    
T  34795917 aacaagtaacaaattatgaagtaaaaatgaataaagtaaccgtatgaacaggtaataaagtaaccatattcaaaataataattcaaaaacaaaaggaaaa 34795818  T
Q  403 nnnnttgactaagtaagaaaaagaggatcatgcaaaaatagatataaatggatttttaagaaacatct 470  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34795817 aaaattgactaagtaagaaaaagaggatcatgcaaaaatagatataaatggatttttaagaaacatct 34795750  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 407 - 470
Target Start/End: Complemental strand, 34780965 - 34780902
Alignment:
Q  407 ttgactaagtaagaaaaagaggatcatgcaaaaatagatataaatggatttttaagaaacatct 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34780965 ttgactaagtaagaaaaagaggatcatgcaaaaatagatataaatggatttttaagaaacatct 34780902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 414 - 468
Target Start/End: Complemental strand, 34771465 - 34771411
Alignment:
Q  414 agtaagaaaaagaggatcatgcaaaaatagatataaatggatttttaagaaacat 468  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34771465 agtaagaaaaagaggatcaagcaaaaatagatataaatggatttttaagaaacat 34771411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 34781054 - 34780983
Alignment:
Q  260 aagtaacaatatatagagaggtaagtgatggcattggtcaggtaacaagtaacaaattatgaagtaaaaatgaa 333  Q
    ||||||||||||||||||||| ||||||||| ||||||   |||||| ||||||||||||||||||||||||||    
T  34781054 aagtaacaatatatagagagggaagtgatggtattggt--agtaacatgtaacaaattatgaagtaaaaatgaa 34780983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 34771529 - 34771497
Alignment:
Q  220 tgtgaatgtgaatatgcatatgaatgtgtgtgt 252  Q
    |||||||||||||||||||||||||||||||||    
T  34771529 tgtgaatgtgaatatgcatatgaatgtgtgtgt 34771497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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