View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10572_2 (Length: 448)
Name: NF10572_2
Description: NF10572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10572_2 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 3669122 - 3668691
Alignment:
| Q |
1 |
ctgaagagttagtttgtgcttcatgttttgttgttccttcaaatgaaaaatttgtttgctttgtagattcattgaatatcaatgtgtcatgtgtctttag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3669122 |
ctgaagagttagtttgtgcttcatgttttgttgttccttcaaatgaaaaatttgtttgctttgtagattcattgaatatcaatgtgtcatgtgtctttag |
3669023 |
T |
|
| Q |
101 |
tggttcctcctgttcaagttgaacaagtattagtaaatta-----caagatttgcatatattccaaagcatcaataaataacacaatgtttgtgttagaa |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3669022 |
tggttcctcctgttcaagttgaacaagtattagtaaattaaattacaagatttgcatatattccaaagcatcaataaataacacaatgtttgtgttagaa |
3668923 |
T |
|
| Q |
196 |
tattagaaaatatcttataatatctttatattatatagtagcatttaagtttatctcgcacgtcaatttattagaagacaagtcaatagaacggttcatg |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3668922 |
tattagaaaatatcttataatatctttatatcatattgtagcatttaagtttatctcgcatgtcaatttattagaagacaagtcaatagaacggttcatg |
3668823 |
T |
|
| Q |
296 |
ttcttgcaataatggatacatttttaacttggattcatattttatagatattataactcgtatccaacatattatcgttaatgaaatgcaatcaa----- |
390 |
Q |
| |
|
|||||| ||||||||| |||||||||| | |||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
3668822 |
ttcttgtaataatggacacatttttaattcagatttacattttatagatattataactcgtgtccaacatattatcgttaatgaaatgcaataaacatgt |
3668723 |
T |
|
| Q |
391 |
ctcgctcaaaataataatattaaaaaatatag |
422 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| |
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|
| T |
3668722 |
cttgctcaaaataataatattaaaaaatatag |
3668691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 12410897 - 12410855
Alignment:
| Q |
187 |
gtgttagaatattagaaaatatcttataatatctttatattat |
229 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||| |
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|
| T |
12410897 |
gtgttagaatattagaaaataccttatactatctttatattat |
12410855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 44701657 - 44701616
Alignment:
| Q |
188 |
tgttagaatattagaaaatatcttataatatctttatattat |
229 |
Q |
| |
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||||||||||| |||||||||||||||||||||| ||||||| |
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|
| T |
44701657 |
tgttagaatataagaaaatatcttataatatcttgatattat |
44701616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 52623360 - 52623328
Alignment:
| Q |
188 |
tgttagaatattagaaaatatcttataatatct |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
52623360 |
tgttagaatattagaaaatatcttataatatct |
52623328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 35488086 - 35488052
Alignment:
| Q |
187 |
gtgttagaatattagaaaatatcttataatatctt |
221 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35488086 |
gtgttggaatattagaaaatatcttataatatctt |
35488052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 226
Target Start/End: Complemental strand, 22853424 - 22853385
Alignment:
| Q |
187 |
gtgttagaatattagaaaatatcttataatatctttatat |
226 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||| |
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|
| T |
22853424 |
gtgttagaatattagaatatatcttataatatccttatat |
22853385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 22127267 - 22127299
Alignment:
| Q |
188 |
tgttagaatattagaaaatatcttataatatct |
220 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
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|
| T |
22127267 |
tgttagaatattataaaatatcttataatatct |
22127299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 219
Target Start/End: Complemental strand, 5259230 - 5259200
Alignment:
| Q |
189 |
gttagaatattagaaaatatcttataatatc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
5259230 |
gttagaatattagaaaatatcttataatatc |
5259200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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