View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10572_3 (Length: 433)

Name: NF10572_3
Description: NF10572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10572_3
NF10572_3
[»] chr1 (7 HSPs)
chr1 (18-191)||(14653241-14653413)
chr1 (18-191)||(14663032-14663204)
chr1 (241-395)||(14707460-14707616)
chr1 (75-191)||(14668639-14668749)
chr1 (248-395)||(14668196-14668345)
chr1 (269-307)||(35322371-35322409)
chr1 (242-327)||(14665175-14665260)
[»] chr2 (3 HSPs)
chr2 (75-191)||(30732451-30732561)
chr2 (273-395)||(30732879-30733003)
chr2 (269-303)||(17902903-17902937)
[»] chr5 (1 HSPs)
chr5 (269-307)||(33305034-33305072)
[»] chr3 (1 HSPs)
chr3 (269-307)||(31637621-31637659)


Alignment Details
Target: chr1 (Bit Score: 125; Significance: 3e-64; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 14653413 - 14653241
Alignment:
Q  18 ctgtgccttattcgaaaatggtatcaaagatattgatcatgtannnnnnncaatgtcataacagtgagctttgttggcgtagagctggtctttcgaattt 117  Q
    ||||||||||||||||||||||||| ||||||||||| ||||        ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14653413 ctgtgccttattcgaaaatggtatcgaagatattgattatgt-gttttttcaatgtcataacagtgagctttgttggcgtagagctggtctttggaattt 14653315  T
Q  118 tcattcaacagcatgcttcacttcacactctcggactggaacagaaattttttcctgcatgttgcagaatttta 191  Q
    | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14653314 ttattcagcagcatgcttcacttcacactctcggactggaacagaaattttttcctgcatgttgcagaatttta 14653241  T

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Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 14663204 - 14663032
Alignment:
Q  18 ctgtgccttattcgaaaatggtatcaaagatattgatcatgtannnnnnncaatgtcataacagtgagctttgttggcgtagagctggtctttcgaattt 117  Q
    ||||||||||||||||||||||||| ||||||||||| ||||        ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14663204 ctgtgccttattcgaaaatggtatcgaagatattgattatgt-gttttttcaatgtcataacagtgagctttgttggcgtagagctggtctttggaattt 14663106  T
Q  118 tcattcaacagcatgcttcacttcacactctcggactggaacagaaattttttcctgcatgttgcagaatttta 191  Q
    | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14663105 ttattcagcagcatgcttcacttcacactctcggactggaacagaaattttttcctgcatgttgcagaatttta 14663032  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 241 - 395
Target Start/End: Original strand, 14707460 - 14707616
Alignment:
Q  241 gataatattgttcgttgtaaaaactaaggtgaagtttattaggagacaagtcaatggggttgctcat--gtgttagtaagggtggccttccgcattttca 338  Q
    |||||| |||| ||||||||||| |||| |  ||||||||||||||||||||||  |||||||||||  ||||||| ||||| |||||||| ||||| ||    
T  14707460 gataatcttgtccgttgtaaaaattaagattgagtttattaggagacaagtcaaaagggttgctcataagtgttagcaagggcggccttccacatttcca 14707559  T
Q  339 ttgatcctacatgtactcgcaatattctaattaaggaaatgctataaactttttatc 395  Q
    | |||||||| |||| ||   ||||||||||||| |||||||||||| |||||||||    
T  14707560 tcgatcctacttgtattcatcatattctaattaatgaaatgctataagctttttatc 14707616  T

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Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 75 - 191
Target Start/End: Complemental strand, 14668749 - 14668639
Alignment:
Q  75 ataacagtgagctttgttggcgtagagctggtctttcgaattttcattcaacagcatgcttcacttcacactctcggactggaacagaaattttttcctg 174  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||     ||||| ||||||||||||||| || || |||||  |||    
T  14668749 ataacagtgagctttgttggcgtagagctggtc-ttcgaaatttcattcaacagcat-----acttcgcactctcggactggagcataattttttgtctg 14668656  T
Q  175 catgttgcagaatttta 191  Q
    | |||||||||||||||    
T  14668655 cgtgttgcagaatttta 14668639  T

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Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 248 - 395
Target Start/End: Complemental strand, 14668345 - 14668196
Alignment:
Q  248 ttgttcgttgtaaaaactaaggtgaagtttattaggagacaagtcaatggggttgctcat--gtgttagtaagggtggccttccgcattttcattgatcc 345  Q
    |||| ||||||||||| ||| |   |||||||||||| |||||||||  |||||||||||  ||||||| ||||| |||||||| ||||| |||||||||    
T  14668345 ttgtccgttgtaaaaattaaagatgagtttattaggatacaagtcaaaagggttgctcataagtgttagcaagggcggccttccacatttccattgatcc 14668246  T
Q  346 tacatgtactcgcaatattctaattaaggaaatgctataaactttttatc 395  Q
    | | |||| ||   ||||||||||| | |||||||||||| |||||||||    
T  14668245 tgcttgtattcatcatattctaattgatgaaatgctataagctttttatc 14668196  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 307
Target Start/End: Original strand, 35322371 - 35322409
Alignment:
Q  269 gtgaagtttattaggagacaagtcaatggggttgctcat 307  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  35322371 gtgaagttcattaggagacaagtcaatggtgttgctcat 35322409  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 327
Target Start/End: Complemental strand, 14665260 - 14665175
Alignment:
Q  242 ataatattgttcgttgtaaaaactaaggtgaagtttattaggagacaagtcaatggggttgctcatgtgttagtaagggtggcctt 327  Q
    ||||| |||| |||||||||| ||| | |  || |||| |||||| |||||||||  |||||||||||||||| ||||| ||||||    
T  14665260 ataatcttgtccgttgtaaaatctatgattgagcttataaggagaaaagtcaatgacgttgctcatgtgttagcaagggcggcctt 14665175  T

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Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 75 - 191
Target Start/End: Original strand, 30732451 - 30732561
Alignment:
Q  75 ataacagtgagctttgttggcgtagagctggtctttcgaattttcattcaacagcatgcttcacttcacactctcggactggaacagaaattttttcctg 174  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||     ||||| ||||||||||||||| ||||| |||||  |||    
T  30732451 ataacagtgagctttgttggcgtagagctggtc-ttcgaaatttcattcaacagtat-----acttcgcactctcggactggagcagaattttttgtctg 30732544  T
Q  175 catgttgcagaatttta 191  Q
    | |||||||||||||||    
T  30732545 cgtgttgcagaatttta 30732561  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 273 - 395
Target Start/End: Original strand, 30732879 - 30733003
Alignment:
Q  273 agtttattaggagacaagtcaatggggttgctcat--gtgttagtaagggtggccttccgcattttcattgatcctacatgtactcgcaatattctaatt 370  Q
    ||||||||||||||||||||||  |||||||||||  ||||||| ||||| |||||||| ||||| |||||||||| | |||| ||   |||||||||||    
T  30732879 agtttattaggagacaagtcaaaagggttgctcataagtgttagcaagggcggccttccacatttccattgatcctgcttgtattcatcatattctaatt 30732978  T
Q  371 aaggaaatgctataaactttttatc 395  Q
     | |||||||||||| |||||||||    
T  30732979 gatgaaatgctataagctttttatc 30733003  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 17902903 - 17902937
Alignment:
Q  269 gtgaagtttattaggagacaagtcaatggggttgc 303  Q
    ||||||||||||||||||||||||||||| |||||    
T  17902903 gtgaagtttattaggagacaagtcaatggtgttgc 17902937  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 307
Target Start/End: Complemental strand, 33305072 - 33305034
Alignment:
Q  269 gtgaagtttattaggagacaagtcaatggggttgctcat 307  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  33305072 gtgaagttcattaggagacaagtcaatggtgttgctcat 33305034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 307
Target Start/End: Original strand, 31637621 - 31637659
Alignment:
Q  269 gtgaagtttattaggagacaagtcaatggggttgctcat 307  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  31637621 gtgaagttcattaggagacaagtcaatggtgttgctcat 31637659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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