View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10572_6 (Length: 395)
Name: NF10572_6
Description: NF10572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10572_6 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 39 - 385
Target Start/End: Complemental strand, 965404 - 965058
Alignment:
| Q |
39 |
ctatattattaacataaggtacgagatgacgacgattgggtgtatgaatctgagttaattaagaaatattatcaagaaaaagaaaattgggccaatctag |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
965404 |
ctatattattaacataaggtacgagatgacgacgattgggtgtatgaatccgagttaattaagaaatattatcaagaaaaagaaaattgggccaatccag |
965305 |
T |
|
| Q |
139 |
aatttgttctaagttgtcttacatcaaaccttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaatcacattatgctagcaagatt |
238 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
965304 |
aatttgttccaagttgtcttacatcaaaccttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaatcacattatgctagcaagatt |
965205 |
T |
|
| Q |
239 |
tattctggagaatgcaagagttttagaaactatgtcaatgtggtgctacacgaaagggtctaaagtagaattagaaagagtattatcatcatgtcatagg |
338 |
Q |
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| T |
965204 |
tattctggagaatgcaagagttttagaaactatgtcaatgtggtgctacacgaaagggtctaaagtagaattagaaagagtattatcatcatgtcatagg |
965105 |
T |
|
| Q |
339 |
gcttcttcagcatgtcaacactccatgtattgcttgtagtttctctg |
385 |
Q |
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| T |
965104 |
gcttcttcagcatgtcaactctcaatgtattgcttgtagtttctctg |
965058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 113 - 272
Target Start/End: Complemental strand, 973895 - 973736
Alignment:
| Q |
113 |
agaaaaagaaaattgggccaatctagaatttgttctaagttgtcttacatcaaaccttacaacttgcactatgtgggactttgcatatgcaggccaacaa |
212 |
Q |
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| T |
973895 |
agaaaaagaaaattgggccaatccaaaatttgttccaagttgtcttacatcaaaccttacaacttgcactatgtgggactttgcatatgcaggccaacaa |
973796 |
T |
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| Q |
213 |
cgtaatcacattatgctagcaagatttattctggagaatgcaagagttttagaaactatg |
272 |
Q |
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| T |
973795 |
cgtaatcacattatgttagcaagatttattctggagaacgcaagagttttacaaactatg |
973736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 138 - 288
Target Start/End: Original strand, 1400002 - 1400149
Alignment:
| Q |
138 |
gaatttgttctaagttgtcttacatcaaaccttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaatcacattatgctagcaagat |
237 |
Q |
| |
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|||| ||||| |||||||||| ||| ||||||||||||||||| |||| ||||||||| ||| ||||||||||||||||| ||||||| ||||||| | |
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| T |
1400002 |
gaatctgttccaagttgtctttcattaaaccttacaacttgcaatatgcgggactttg---atgaaggccaacaacgtaatcgcattatgttagcaaggt |
1400098 |
T |
|
| Q |
238 |
ttattctggagaatgcaagagttttagaaactatgtcaatgtggtgctaca |
288 |
Q |
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|||||||| |||||||||||||||||||||||||| |||| |||||||||| |
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| T |
1400099 |
ttattctgcagaatgcaagagttttagaaactatgccaatctggtgctaca |
1400149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 143 - 277
Target Start/End: Original strand, 821325 - 821459
Alignment:
| Q |
143 |
tgttctaagttgtcttacatcaaaccttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaatcacattatgctagcaagatttatt |
242 |
Q |
| |
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||||| |||||| || ||| |||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||| |||||| ||||||| |
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| T |
821325 |
tgttccaagttgcgtttcattaaaccttacaacttgcactatgcgggactttgcacttgcaggccaacaatgtaatcacattatgttagcaatatttatt |
821424 |
T |
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| Q |
243 |
ctggagaatgcaagagttttagaaactatgtcaat |
277 |
Q |
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||| ||||||| |||||||||||||||||| |||| |
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| T |
821425 |
ctgaagaatgcgagagttttagaaactatgacaat |
821459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 144 - 288
Target Start/End: Original strand, 1403726 - 1403870
Alignment:
| Q |
144 |
gttctaagttgtcttacatcaaaccttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaatcacattatgctagcaagatttattc |
243 |
Q |
| |
|
|||| |||||| ||| ||| ||||||||||||||||| |||| ||||||||| || || |||||| ||||||| ||||||| ||||||| ||||||| |
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| T |
1403726 |
gttccaagttgcctttcattaaaccttacaacttgcaatatgcgggactttgttgttgtagaccaacaccgtaatcgcattatgttagcaaggtttattc |
1403825 |
T |
|
| Q |
244 |
tggagaatgcaagagttttagaaactatgtcaatgtggtgctaca |
288 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
1403826 |
tggataatgcaagagttttagaaactatgtcaatctggtgctaca |
1403870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 144 - 277
Target Start/End: Complemental strand, 957934 - 957801
Alignment:
| Q |
144 |
gttctaagttgtcttacatcaaaccttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaatcacattatgctagcaagatttattc |
243 |
Q |
| |
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|||| |||||| ||| ||| |||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||| |||| ||||| |||||||| |
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| T |
957934 |
gttccaagttgcctttcattaaaccttacaacttgcactatgcgggactttgcacttgcaggccaacaaagtaatcatcttattttagcattatttattc |
957835 |
T |
|
| Q |
244 |
tggagaatgcaagagttttagaaactatgtcaat |
277 |
Q |
| |
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|| ||||||| ||||||||||||||| ||||||| |
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| T |
957834 |
tgaagaatgcgagagttttagaaactttgtcaat |
957801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 164 - 357
Target Start/End: Original strand, 410490 - 410677
Alignment:
| Q |
164 |
aaaccttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaatcacattatgctagcaagatttattctggagaatgcaagagtttta |
263 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||| |||||||| ||||| | |||||||||| |||||| ||||||||| ||||||||||||||||| |
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| T |
410490 |
aaaccttacaacttgcactattcgggacttcgcatttgcaggcctacaacattgtcacattatgttagcaaaatttattctaaagaatgcaagagtttta |
410589 |
T |
|
| Q |
264 |
gaaactatgtcaatgtggtgctacacgaaagggtctaaagtagaattagaaagagtattatcatcatgtcatagggcttcttcagcatgtcaac |
357 |
Q |
| |
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||||||| | || | |||| ||| |||| |||||||| |||||||| ||||||| ||||||| ||||||||| || ||||||||| |
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| T |
410590 |
cgaactatgactatcttgtgcaacaagaaacagtctaaag------tagaaagactattatcctcatgtccaagggcttctacaacatgtcaac |
410677 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 151 - 353
Target Start/End: Complemental strand, 10116596 - 10116400
Alignment:
| Q |
151 |
gttgtcttacatcaaaccttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaatcacattatgctagcaagatttattctggagaa |
250 |
Q |
| |
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|||||||| ||||||||||||||||||| |||||| |||| |||| || | |||||| ||| || |||||||||||||||| || |||||||| ||||| |
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| T |
10116596 |
gttgtctttcatcaaaccttacaacttgtactatgcgggaatttgaattttcaggcctacagtgttatcacattatgctagctaggtttattcttgagaa |
10116497 |
T |
|
| Q |
251 |
tgcaagagttttagaaactatgtcaatgtggtgctacacgaaagggtctaaagtagaattagaaagagtattatcatcatgtcatagggcttcttcagca |
350 |
Q |
| |
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||| ||||||||||||||||||||||| ||||| | | |||| |||||| || |||||||||| ||||| ||||||| |||||||||||| || |
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| T |
10116496 |
tgcgagagttttagaaactatgtcaatctggtgttgcgggaaacggtcta------aaatagaaagagtgttatcctcatgtccaagggcttcttcaaca |
10116403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 118 - 284
Target Start/End: Complemental strand, 45810362 - 45810196
Alignment:
| Q |
118 |
aagaaaattgggccaatctagaatttgttctaagttgtcttacatcaaaccttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaa |
217 |
Q |
| |
|
||||||| |||||| ||| | ||| ||||| || ||| ||| ||| |||||| || |||||||||||| |||||||||||| ||||||| ||||||||| |
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| T |
45810362 |
aagaaaactgggcctatccaaaatctgttccaacttgcctttcattaaacctcacgacttgcactatgcgggactttgcatttgcaggcttacaacgtaa |
45810263 |
T |
|
| Q |
218 |
tcacattatgctagcaagatttattctggagaatgcaagagttttagaaactatgtcaatgtggtgc |
284 |
Q |
| |
|
||| ||||| ||||||| ||||||||| ||||||||| |||||||||||||||| |||| |||||| |
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|
| T |
45810262 |
tcatgttatgttagcaaggtttattctgaagaatgcaaaagttttagaaactatgacaatttggtgc |
45810196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 151 - 285
Target Start/End: Original strand, 12105507 - 12105641
Alignment:
| Q |
151 |
gttgtcttacatcaaaccttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaatcacattatgctagcaagatttattctggagaa |
250 |
Q |
| |
|
|||| ||| |||||||||||| |||||| || || | ||||||||| || ||||| ||| || ||||||||||| |||||| |||||||||| |||| |
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| T |
12105507 |
gttgcctttcatcaaaccttagaacttgtacgatccgtgactttgcaattggaggcctacagagttatcacattatgttagcaaaatttattctgaagaa |
12105606 |
T |
|
| Q |
251 |
tgcaagagttttagaaactatgtcaatgtggtgct |
285 |
Q |
| |
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| ||| ||||||||||| ||||||||| ||||||| |
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| T |
12105607 |
ttcaacagttttagaaaatatgtcaatctggtgct |
12105641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 168 - 268
Target Start/End: Complemental strand, 28449608 - 28449511
Alignment:
| Q |
168 |
cttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaatcacattatgctagcaagatttattctggagaatgcaagagttttagaaa |
267 |
Q |
| |
|
||||||||||||||||| |||||||||||| || || || |||| ||| |||||||||||||||||| |||||| | ||||||||||||||| ||| |
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|
| T |
28449608 |
cttacaacttgcactattcgggactttgcatttgtagacctacaa---aatgacattatgctagcaagatatattcttaataatgcaagagttttacaaa |
28449512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 285
Target Start/End: Complemental strand, 1445861 - 1445743
Alignment:
| Q |
167 |
ccttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaatcacattatgctagcaagatttattctggagaatgcaagagttttagaa |
266 |
Q |
| |
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||||| ||| ||| ||||| ||||||||| || |||||| | |||| | | |||| |||| |||||| || ||||||| | ||| || |||||||||| |
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| T |
1445861 |
ccttaaaacatgctctatgagggactttggatttgcaggtcttcaacatgagcacactatgttagcaacatatattctgaacaattcatcagttttagaa |
1445762 |
T |
|
| Q |
267 |
actatgtcaatgtggtgct |
285 |
Q |
| |
|
||||||||||| ||||||| |
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|
| T |
1445761 |
actatgtcaatttggtgct |
1445743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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