View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10572_8 (Length: 352)
Name: NF10572_8
Description: NF10572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10572_8 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 42155675 - 42155906
Alignment:
| Q |
1 |
aagattcacaaagagagcttnnnnnnnctcttattttctatacaacaccccttttttcttcttctaaatcacagtacctatttgatatcaagtaatcaaa |
100 |
Q |
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| T |
42155675 |
aagattcacaaagagagcttaaaaaaactcttattttctatacaacacccattttttcttcttctaaatcagagtacctatttgatatcaagtaatgaaa |
42155774 |
T |
|
| Q |
101 |
tttactcacctcaagttggtaagcaaggttctatttgggagtatggagaggagatgaatggagggttggaatatttagaaaaatagaaaaatctcttata |
200 |
Q |
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| T |
42155775 |
tttactcacc-caagttggtaagcaaggttctatttgggagtatggagaggaggggaatggagggttggaatatt--------tagaaaaatcttttata |
42155865 |
T |
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| Q |
201 |
tttttcgaaagaacaattttttcgagaatagtaaactaatg |
241 |
Q |
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| T |
42155866 |
tttttcgaaagaacaattttttcgagaataataaactaatg |
42155906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 18789105 - 18789047
Alignment:
| Q |
170 |
aatatttagaaaaatagaaaaatctcttatatttttcgaaagaacaattttttcgagaa |
228 |
Q |
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| T |
18789105 |
aatatatagaaaaatgaaaaaatcttttatattttttgaaagaacaattttttagagaa |
18789047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 6839672 - 6839723
Alignment:
| Q |
170 |
aatatttagaaaaatagaaaaatctcttatatttttcgaaagaacaattttt |
221 |
Q |
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| T |
6839672 |
aatatgtagaaaaatagagaaatctttcatacttttcgaaagaacaattttt |
6839723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 43496689 - 43496639
Alignment:
| Q |
179 |
aaaaatagaaaaatctcttatatttttcgaaagaacaattttttcgagaat |
229 |
Q |
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|||||||||||||||| | |||||||| |||||| ||||||||| |||||| |
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| T |
43496689 |
aaaaatagaaaaatctttcatattttttgaaagagcaattttttggagaat |
43496639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 241
Target Start/End: Original strand, 28773261 - 28773334
Alignment:
| Q |
170 |
aatatttagaaaaatagaaaaatctctt--atatttttcgaaagaacaattttttcgagaatagtaaactaatg |
241 |
Q |
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| T |
28773261 |
aatatatagaaaaatggaaaaatcttatccacatttttcgaaagaacaattttttagagaatgataaactaatg |
28773334 |
T |
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