View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10572_9 (Length: 349)

Name: NF10572_9
Description: NF10572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10572_9
NF10572_9
[»] scaffold0007 (1 HSPs)
scaffold0007 (52-290)||(194391-194630)
[»] chr4 (12 HSPs)
chr4 (213-294)||(41370160-41370241)
chr4 (177-261)||(39727579-39727663)
chr4 (195-289)||(41956427-41956522)
chr4 (202-278)||(42370321-42370398)
chr4 (180-312)||(50343810-50343943)
chr4 (181-267)||(50774961-50775048)
chr4 (213-281)||(36721591-36721659)
chr4 (201-244)||(28002461-28002504)
chr4 (197-234)||(37209359-37209396)
chr4 (195-244)||(45984086-45984135)
chr4 (213-265)||(21074481-21074533)
chr4 (213-265)||(44570125-44570177)
[»] chr3 (16 HSPs)
chr3 (161-278)||(38457225-38457344)
chr3 (212-311)||(47930113-47930212)
chr3 (212-317)||(302023-302128)
chr3 (198-293)||(1557728-1557824)
chr3 (201-261)||(31419229-31419288)
chr3 (180-251)||(43749509-43749581)
chr3 (201-275)||(53433197-53433272)
chr3 (197-265)||(51039771-51039840)
chr3 (180-272)||(28434510-28434602)
chr3 (201-251)||(11404726-11404777)
chr3 (212-251)||(45566117-45566156)
chr3 (213-265)||(28281054-28281107)
chr3 (181-289)||(38388712-38388821)
chr3 (213-274)||(40392425-40392486)
chr3 (180-251)||(39400312-39400384)
chr3 (233-281)||(48811373-48811421)
[»] chr5 (15 HSPs)
chr5 (180-261)||(8761926-8762008)
chr5 (201-317)||(24040993-24041109)
chr5 (180-248)||(39046935-39047003)
chr5 (213-294)||(42877277-42877358)
chr5 (182-251)||(12448672-12448742)
chr5 (197-257)||(5149818-5149879)
chr5 (181-251)||(22873471-22873542)
chr5 (195-265)||(26407533-26407604)
chr5 (202-287)||(779107-779192)
chr5 (180-288)||(5356296-5356405)
chr5 (204-249)||(11844267-11844312)
chr5 (201-296)||(14474990-14475086)
chr5 (181-288)||(33900215-33900323)
chr5 (180-251)||(35395187-35395259)
chr5 (180-267)||(36160318-36160406)
[»] chr1 (22 HSPs)
chr1 (198-288)||(11015834-11015925)
chr1 (197-279)||(1048677-1048759)
chr1 (180-246)||(37976827-37976893)
chr1 (201-251)||(5597736-5597787)
chr1 (213-295)||(14758592-14758674)
chr1 (213-295)||(40203069-40203151)
chr1 (180-281)||(45584538-45584640)
chr1 (213-273)||(26687572-26687632)
chr1 (200-295)||(26857182-26857278)
chr1 (180-295)||(46830123-46830239)
chr1 (221-281)||(50222612-50222672)
chr1 (201-236)||(29525097-29525132)
chr1 (212-267)||(33744154-33744209)
chr1 (213-271)||(17112739-17112797)
chr1 (213-271)||(17554891-17554949)
chr1 (180-280)||(5115612-5115713)
chr1 (180-312)||(13794161-13794292)
chr1 (182-295)||(34596111-34596223)
chr1 (213-273)||(2633064-2633124)
chr1 (200-279)||(5423753-5423833)
chr1 (180-251)||(25095608-25095680)
chr1 (180-251)||(28171517-28171589)
[»] chr6 (8 HSPs)
chr6 (213-310)||(13063857-13063954)
chr6 (201-295)||(31702731-31702826)
chr6 (212-278)||(13070513-13070579)
chr6 (212-278)||(13070650-13070716)
chr6 (198-261)||(30396265-30396328)
chr6 (212-317)||(23399142-23399248)
chr6 (214-278)||(12605996-12606060)
chr6 (196-239)||(13767276-13767320)
[»] chr2 (17 HSPs)
chr2 (180-291)||(8898794-8898908)
chr2 (213-294)||(5961955-5962036)
chr2 (213-294)||(14102291-14102372)
chr2 (213-295)||(2888941-2889023)
chr2 (181-278)||(35312103-35312201)
chr2 (221-290)||(42924413-42924482)
chr2 (200-279)||(13538415-13538495)
chr2 (221-289)||(25622574-25622642)
chr2 (181-280)||(36051954-36052053)
chr2 (181-267)||(8964392-8964479)
chr2 (201-251)||(4616859-4616909)
chr2 (201-294)||(33962935-33963029)
chr2 (221-278)||(2517252-2517309)
chr2 (221-274)||(6581589-6581642)
chr2 (195-235)||(45624402-45624443)
chr2 (213-265)||(2047814-2047866)
chr2 (210-277)||(31513782-31513850)
[»] chr8 (15 HSPs)
chr8 (180-279)||(39691121-39691221)
chr8 (201-277)||(7931734-7931812)
chr8 (195-278)||(34716516-34716599)
chr8 (215-289)||(27055945-27056019)
chr8 (225-295)||(33285916-33285986)
chr8 (180-296)||(17520993-17521110)
chr8 (180-289)||(10335019-10335130)
chr8 (253-317)||(23984327-23984391)
chr8 (195-274)||(32646833-32646912)
chr8 (213-278)||(22209439-22209504)
chr8 (253-317)||(11078133-11078197)
chr8 (195-239)||(13328364-13328408)
chr8 (219-251)||(28313572-28313604)
chr8 (202-238)||(32503397-32503433)
chr8 (212-240)||(35149563-35149591)
[»] chr7 (10 HSPs)
chr7 (195-294)||(31902741-31902841)
chr7 (212-294)||(10031913-10031995)
chr7 (180-273)||(33887866-33887959)
chr7 (210-312)||(35590978-35591079)
chr7 (210-251)||(30972333-30972374)
chr7 (201-278)||(18926347-18926425)
chr7 (180-261)||(220002-220083)
chr7 (233-294)||(3683475-3683535)
chr7 (213-265)||(2959595-2959647)
chr7 (221-293)||(46128010-46128082)
[»] scaffold0047 (1 HSPs)
scaffold0047 (202-247)||(63582-63627)


Alignment Details
Target: scaffold0007 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 52 - 290
Target Start/End: Original strand, 194391 - 194630
Alignment:
Q  52 acacatctctaataacaaatgaattgcatatttgcatgaatgtgtgaaatgagagagccattaaaatcatgagagcnnnnnnntaattgataaagaatat 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||| |||||||||||    
T  194391 acacatctctaataacaaatgaattgcatatttgcatgaatgtgtgaaatgagagagccattaaaatcatgagagcaaaaaaataattcataaagaatat 194490  T
Q  152 gggacatgctaacgagtgctgcagaaca--ctttaaggattctataataaaaaattattctataaaaagttaaatattttaattttcaatgtattgatta 249  Q
      | ||||||||||||||   || ||||  |||||||||||||||||||| ||||||||||||||||||| |||||||| ||| || ||| ||||||| |    
T  194491 -tgtcatgctaacgagtgtcccaaaacactctttaaggattctataataagaaattattctataaaaagtaaaatatttcaatatttaatttattgatca 194589  T
Q  250 cagaatttttcataaatagttactatttaaagaccttaaaa 290  Q
    || |||||||||||||| |||||||| ||||| ||||||||    
T  194590 cacaatttttcataaattgttactatataaaggccttaaaa 194630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 41370241 - 41370160
Alignment:
Q  213 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtg 294  Q
    |||||||||||||||| ||||||||||| |||||||||| || |||||||||| | |||||||| |||| ||||||||||||    
T  41370241 aaaaagttaaatatttcaattttcaatgcattgattacacaaattttcataaaaacttactattcaaagtccttaaaaagtg 41370160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 261
Target Start/End: Complemental strand, 39727663 - 39727579
Alignment:
Q  177 acactttaaggattctataataaaaaattattctataaaaagttaaatattttaattttcaatgtattgattacagaatttttca 261  Q
    ||||||||||||||||| || || ||||||||||||||||||| |||||||| |||||   ||| |||||||||| || ||||||    
T  39727663 acactttaaggattctaaaagaataaattattctataaaaagtcaaatatttcaatttctgatgcattgattacataaattttca 39727579  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 289
Target Start/End: Complemental strand, 41956522 - 41956427
Alignment:
Q  195 aataaaaaattattctataa-aaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaa 289  Q
    ||||| ||| |||||| ||| ||| |||||||||| ||||||||| | |||||||||| ||||||||||||| | |||||||| |||| |||||||    
T  41956522 aataagaaagtattctttaagaaatttaaatatttcaattttcaacgcattgattacacaatttttcataaaaatttactattaaaagcccttaaa 41956427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 42370398 - 42370321
Alignment:
Q  202 aattattctataaaaagttaaatattttaattttcaatgtattgattaca-gaatttttcataaatagttactattta 278  Q
    ||||||||| |||||||| |||||||||||||||||||| ||| |||||| | |||||| ||||||| || |||||||    
T  42370398 aattattctttaaaaagtaaaatattttaattttcaatgcattaattacatgcattttttataaatacttgctattta 42370321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 312
Target Start/End: Complemental strand, 50343943 - 50343810
Alignment:
Q  180 ctttaaggattctataataaaaaattattctataaaaa-gttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactattta 278  Q
    ||||||| ||| || |||||  ||||||||| |||||| || ||||||||||||||||||||||||||||| |    |||||||||||  |||||| |||    
T  50343943 ctttaagcattttaaaataagtaattattctttaaaaaagtcaaatattttaattttcaatgtattgattatatgtattttcataaattcttactactta 50343844  T
Q  279 aagaccttaaaaagtgtttctaagacactcgtta 312  Q
      | |||||||||||||  | |||||||| ||||    
T  50343843 cggtccttaaaaagtgtcacaaagacacttgtta 50343810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 50774961 - 50775048
Alignment:
Q  181 tttaaggattctataataaaaaattattctataaaa-agttaaatattttaattttcaatgtattgattacagaatttttcataaata 267  Q
    |||||| |||||| |||||  ||||||||| ||||| ||||||||||||| ||||||||  ||||||||||| |  ||||||||||||    
T  50774961 tttaagtattctaaaataagtaattattctttaaaaaagttaaatattttgattttcaacatattgattacacatattttcataaata 50775048  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 281
Target Start/End: Complemental strand, 36721659 - 36721591
Alignment:
Q  213 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaag 281  Q
    ||||||| |||||||| |||| |||||| |||||||||| || ||| |||||| | |||||||||||||    
T  36721659 aaaaagtcaaatatttcaattctcaatgcattgattacacaaatttccataaaaacttactatttaaag 36721591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 244
Target Start/End: Complemental strand, 28002504 - 28002461
Alignment:
Q  201 aaattattctataaaaagttaaatattttaattttcaatgtatt 244  Q
    |||||||||  ||||||||||||||||||||||||||| |||||    
T  28002504 aaattattccttaaaaagttaaatattttaattttcaacgtatt 28002461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 37209359 - 37209396
Alignment:
Q  197 taaaaaattattctataaaaagttaaatattttaattt 234  Q
    |||||||||||||| | |||||||||||||||||||||    
T  37209359 taaaaaattattctctcaaaagttaaatattttaattt 37209396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 45984135 - 45984086
Alignment:
Q  195 aataaaaaattattctataaaaagttaaatattttaattttcaatgtatt 244  Q
    |||||| ||||||||| |||||| ||||||||||| |||| |||||||||    
T  45984135 aataaataattattctttaaaaaattaaatattttgatttccaatgtatt 45984086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 21074533 - 21074481
Alignment:
Q  213 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaa 265  Q
    ||||||| |||||||| ||||||||||||| ||| |||| ||||||| |||||    
T  21074533 aaaaagtcaaatatttcaattttcaatgtactgaatacacaattttttataaa 21074481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 44570177 - 44570125
Alignment:
Q  213 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaa 265  Q
    |||| ||||||| ||||||||||||||| |||||||||| ||  |||||||||    
T  44570177 aaaatgttaaattttttaattttcaatgcattgattacacaaactttcataaa 44570125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 161 - 278
Target Start/End: Complemental strand, 38457344 - 38457225
Alignment:
Q  161 taacgagtgctgcagaaca--ctttaaggattctataataaaaaattattctataaaaagttaaatattttaattttcaatgtattgattacagaatttt 258  Q
    ||||||||||| ||| |||  ||||||| ||||||||||||  ||||||||| |||||| ||||||||||| |||||||||| ||||||||||    |||    
T  38457344 taacgagtgctccaggacattctttaagcattctataataagcaattattctttaaaaaattaaatattttgattttcaatgcattgattacatgtattt 38457245  T
Q  259 tcataaatagttactattta 278  Q
    || |||||| ||||||||||    
T  38457244 tcgtaaatacttactattta 38457225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 311
Target Start/End: Original strand, 47930113 - 47930212
Alignment:
Q  212 taaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtgtttctaagacactcgtt 311  Q
    ||||||||||||||||||||||||||||  ||| | |||| || |||||||||| | |||| | | |||  |||||||||||||||| | ||||||||||    
T  47930113 taaaaagttaaatattttaattttcaatacattaaatacacaaattttcataaaaatttaccaatcaaatcccttaaaaagtgtttcgatgacactcgtt 47930212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 317
Target Start/End: Complemental strand, 302128 - 302023
Alignment:
Q  212 taaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtgtttctaagacactcgtt 311  Q
    |||||||| |||||||||||||||||||  | |  ||||| || || |||||||   |||| ||||||||| |||||||||||||||  |||||||||||    
T  302128 taaaaagtcaaatattttaattttcaatacaatagttacacaaattgtcataaaagattaccatttaaagatcttaaaaagtgtttcggagacactcgtt 302029  T
Q  312 agcatt 317  Q
    | ||||    
T  302028 aacatt 302023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 293
Target Start/End: Complemental strand, 1557824 - 1557728
Alignment:
Q  198 aaaaaattattctataaaaag-ttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagt 293  Q
    ||||||||||| ||||||||  ||||||||||||||||| ||| ||||||||||| |  |||| ||||| | |||  ||||||||| ||||||||||    
T  1557824 aaaaaattattttataaaaaaattaaatattttaatttttaatatattgattacatatatttttataaaaaattatcatttaaagatcttaaaaagt 1557728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 31419229 - 31419288
Alignment:
Q  201 aaattattctataaaaagttaaatattttaattttcaatgtattgattacagaatttttca 261  Q
    ||||||||| ||||||| |||||||||| |||||||||||||||||||||| || ||||||    
T  31419229 aaattattccataaaaa-ttaaatatttaaattttcaatgtattgattacataaattttca 31419288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 180 - 251
Target Start/End: Complemental strand, 43749581 - 43749509
Alignment:
Q  180 ctttaaggattctataataaaaaattattctat-aaaaagttaaatattttaattttcaatgtattgattaca 251  Q
    |||||||||||||| || || |||||||||||| ||||||| |||||||| ||||||| || |||||||||||    
T  43749581 ctttaaggattctaaaagaataaattattctattaaaaagtcaaatatttcaattttctatatattgattaca 43749509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 275
Target Start/End: Complemental strand, 53433272 - 53433197
Alignment:
Q  201 aaattattctataaaaa-gttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactat 275  Q
    ||||||||||||||||| || |||||||||||||||| ||| |||||||||| || |||||| | | |||||||||    
T  53433272 aaattattctataaaaaagtcaaatattttaattttcgatgcattgattacataaattttcaaagaaagttactat 53433197  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 265
Target Start/End: Original strand, 51039771 - 51039840
Alignment:
Q  197 taaaaaattattctataaaaa-gttaaatattttaattttcaatgtattgattacagaatttttcataaa 265  Q
    ||||||||||||||||||||| || ||||| || ||||||||||| ||||| |||| || ||||||||||    
T  51039771 taaaaaattattctataaaaaagtcaaatagttcaattttcaatgaattgaatacataaattttcataaa 51039840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 272
Target Start/End: Original strand, 28434510 - 28434602
Alignment:
Q  180 ctttaaggattctataataaaaaattattctataaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttac 272  Q
    ||||||||||| ||  | || ||||||||  ||||||||| ||||||||| |||||| ||| |||||||||| || |||||| ||| ||||||    
T  28434510 ctttaaggattttaagagaataaattatttcataaaaagtcaaatattttgattttcgatgcattgattacataaattttcaaaaaaagttac 28434602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 11404726 - 11404777
Alignment:
Q  201 aaattattctataaaa-agttaaatattttaattttcaatgtattgattaca 251  Q
    |||||||| ||||||| ||||||||||||||||||| |||||||| ||||||    
T  11404726 aaattattttataaaaaagttaaatattttaatttttaatgtattaattaca 11404777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 251
Target Start/End: Complemental strand, 45566156 - 45566117
Alignment:
Q  212 taaaaagttaaatattttaattttcaatgtattgattaca 251  Q
    ||||||||||||||||| ||||||||||||||| ||||||    
T  45566156 taaaaagttaaatatttcaattttcaatgtatttattaca 45566117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 28281107 - 28281054
Alignment:
Q  213 aaaaagttaaatattttaattttcaatgtattgattacaga-atttttcataaa 265  Q
    ||||||| ||||||||||||||| |||||||| |||||| | ||||||||||||    
T  28281107 aaaaagtcaaatattttaatttttaatgtattaattacacatatttttcataaa 28281054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 289
Target Start/End: Original strand, 38388712 - 38388821
Alignment:
Q  181 tttaaggattctataataaaaaattattctataaaaa-gttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaa 279  Q
    ||||| ||||||| || || |||||| | |||||||| || ||||||||| ||||||| || |||||||||| |  |||| ||||| | |||||||||||    
T  38388712 tttaaagattctaaaagaagaaattaatttataaaaaagtcaaatattttgattttcattgcattgattacacatatttttataaaaatttactatttaa 38388811  T
Q  280 agaccttaaa 289  Q
    | | ||||||    
T  38388812 aaaacttaaa 38388821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 274
Target Start/End: Original strand, 40392425 - 40392486
Alignment:
Q  213 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttacta 274  Q
    ||||||||||||||||| ||||  |||| |||||||||| |  |||||||||||| ||||||    
T  40392425 aaaaagttaaatatttttatttctaatgcattgattacatatattttcataaatatttacta 40392486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 251
Target Start/End: Complemental strand, 39400384 - 39400312
Alignment:
Q  180 ctttaaggattctataataaaaaattattctataaa-aagttaaatattttaattttcaatgtattgattaca 251  Q
    ||||||| || ||| |||||  ||||||||| |||| |||||||| |||||||||||||||| ||| ||||||    
T  39400384 ctttaagtatactaaaataattaattattctttaaacaagttaaacattttaattttcaatgcattaattaca 39400312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 48811421 - 48811373
Alignment:
Q  233 tttcaatgtattgattacagaatttttcataaatagttactatttaaag 281  Q
    |||||||| |||||||||| ||||||||||||| | |||||||| ||||    
T  48811421 tttcaatgcattgattacacaatttttcataaaaacttactattaaaag 48811373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 8761926 - 8762008
Alignment:
Q  180 ctttaaggattctataataaaaaattattctataaaa-agttaaatattttaattttcaatgtattgattacagaatttttca 261  Q
    |||||||||||||| || || |||||||||||||||| |||||||||||| |||||||||||||||||| ||| || ||||||    
T  8761926 ctttaaggattctaaaaaaagaaattattctataaaaaagttaaatatttcaattttcaatgtattgatgacataaattttca 8762008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 317
Target Start/End: Complemental strand, 24041109 - 24040993
Alignment:
Q  201 aaattattctataaaaagtt-aaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtgtttct 299  Q
    |||||||||| |||||| || ||||| |||||||| ||||  ||| | |||| || |||||||||| |||||||||||||   |||||||||||| |||     
T  24041109 aaattattctttaaaaaattcaaatagtttaatttccaatacattaaatacataacttttcataaaaagttactatttaagacccttaaaaagtg-ttca 24041011  T
Q  300 aagacactcgttagcatt 317  Q
    ||||||||||||| ||||    
T  24041010 aagacactcgttaacatt 24040993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 39046935 - 39047003
Alignment:
Q  180 ctttaaggattctataataaaaaattattctataaaaa-gttaaatattttaattttcaatgtattgatt 248  Q
    ||||||||||||| ||||||||||||||||| |||||| |||||| | |||||||||||||| |||||||    
T  39046935 ctttaaggattct-taataaaaaattattctttaaaaacgttaaaaactttaattttcaatgcattgatt 39047003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 294
Target Start/End: Original strand, 42877277 - 42877358
Alignment:
Q  213 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtg 294  Q
    |||||||| || |||| ||||||||||||||||| |||| |||||| |||||| | ||||||||||||| | ||||| ||||    
T  42877277 aaaaagtttaaaatttcaattttcaatgtattgaatacacaattttccataaaaatttactatttaaagtctttaaagagtg 42877358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 12448672 - 12448742
Alignment:
Q  182 ttaaggattctataataaaaaattattctataaaa-agttaaatattttaattttcaatgtattgattaca 251  Q
    ||||||||| || ||||| ||||||||| |||||| |||||||||||| ||||||||||| | ||||||||    
T  12448672 ttaaggattttaaaataagaaattattcaataaaaaagttaaatatttcaattttcaatgcaatgattaca 12448742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 5149818 - 5149879
Alignment:
Q  197 taaaaaattattctataaaaa-gttaaatattttaattttcaatgtattgattacagaattt 257  Q
    ||||||||| |||| |||||| |||||||||||||||||||||| |||| |||||| |||||    
T  5149818 taaaaaattgttctttaaaaatgttaaatattttaattttcaatatattaattacacaattt 5149879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 22873471 - 22873542
Alignment:
Q  181 tttaaggattctataataaaaaattattctataaaa-agttaaatattttaattttcaatgtattgattaca 251  Q
    |||||| ||| || |||||| ||||||||| ||||| ||||||||||||||||||| |||| ||||| ||||    
T  22873471 tttaagtattttaaaataaagaattattctttaaaaaagttaaatattttaatttttaatgcattgaataca 22873542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 265
Target Start/End: Complemental strand, 26407604 - 26407533
Alignment:
Q  195 aataaaaaattattctataa-aaagttaaatattttaattttcaatgtattgattacagaatttttcataaa 265  Q
    |||||||||||||||| ||| ||| |||||||||| ||||||||||| ||| |||| | || ||||||||||    
T  26407604 aataaaaaattattctttaataaaattaaatatttcaattttcaatgaattaattatataaattttcataaa 26407533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 779107 - 779192
Alignment:
Q  202 aattattctataaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagacctta 287  Q
    ||||||| | ||||||||||||| |||  |||| ||||| |||||||||| | |||||| ||||||  ||||||||| || |||||    
T  779107 aattattttttaaaaagttaaatgtttcgatttccaatgcattgattacacactttttcgtaaatacatactatttatagtcctta 779192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 288
Target Start/End: Complemental strand, 5356405 - 5356296
Alignment:
Q  180 ctttaaggattctataataaaaaattattctataaaaa-gttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactattta 278  Q
    |||||||||| | | ||||| |||||| | |||||||| || ||||||||  |||||| ||| |||||||||| |  ||||||| |  |||||| |||||    
T  5356405 ctttaaggataccaaaataagaaattaatttataaaaacgtcaaatatttcgattttcgatgcattgattacacatattttcatgataagttaccattta 5356306  T
Q  279 aagaccttaa 288  Q
    ||||||||||    
T  5356305 aagaccttaa 5356296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 11844267 - 11844312
Alignment:
Q  204 ttattctataaaaagttaaatattttaattttcaatgtattgatta 249  Q
    ||||||| ||||||||||||||||||||||| ||||  ||||||||    
T  11844267 ttattctttaaaaagttaaatattttaatttccaatacattgatta 11844312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 296
Target Start/End: Complemental strand, 14475086 - 14474990
Alignment:
Q  201 aaattattctataaaaa-gttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtgtt 296  Q
    ||||||||||||||||| || |||||||| |||||   |||  ||||||||| || |||||| ||| ||||||||||| |||  |||||| ||||||    
T  14475086 aaattattctataaaaatgtcaaatatttcaatttcagatgctttgattacataaattttcaaaaaaagttactatttgaaggtcttaaagagtgtt 14474990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 288
Target Start/End: Original strand, 33900215 - 33900323
Alignment:
Q  181 tttaaggattctataataaaaaattattctataaaaagttaaatattttaattttcaatgtattgattacagaatttt-tcataaatagttactatttaa 279  Q
    |||||| ||| || |||||| ||| ||| | |||||||| |||||||| ||||  ||||| ||| |||||| | |||| ||||||||||||||| ||||     
T  33900215 tttaagcattttaaaataaacaataattttttaaaaagtcaaatatttcaattcccaatgcattaattacatatttttttcataaatagttactctttat 33900314  T
Q  280 agaccttaa 288  Q
    || ||||||    
T  33900315 agtccttaa 33900323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 35395187 - 35395259
Alignment:
Q  180 ctttaaggattctataataaaaaattattctataaaaa-gttaaatattttaattttcaatgtattgattaca 251  Q
    |||||||||||| | || || ||| |||| |||||||| || |||||||||||||||| ||| ||||||||||    
T  35395187 ctttaaggattccaaaagaagaaactattttataaaaaagtcaaatattttaattttcgatgcattgattaca 35395259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 267
Target Start/End: Original strand, 36160318 - 36160406
Alignment:
Q  180 ctttaaggattctataataaaaaattattctataaaaa-gttaaatattttaattttcaatgtattgattacagaatttttcataaata 267  Q
    ||||||| |||||| |||||  ||||||| | |||||| || |||| |||| ||||||||| |||| ||||||  ||||||||||||||    
T  36160318 ctttaagcattctaaaataagcaattattttttaaaaaagtcaaatgttttgattttcaatatattaattacacgatttttcataaata 36160406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 198 - 288
Target Start/End: Original strand, 11015834 - 11015925
Alignment:
Q  198 aaaaaattattctata-aaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaa 288  Q
    ||||||||||| |||| |||| ||||||||||||||||||||| |||| ||||||||  |||| ||||| | |||||||||||||| |||||    
T  11015834 aaaaaattattttatataaaaattaaatattttaattttcaatctatttattacagatatttttataaaaatttactatttaaagatcttaa 11015925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 279
Target Start/End: Complemental strand, 1048759 - 1048677
Alignment:
Q  197 taaaaaattattctataaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaa 279  Q
    |||||||||||||| |||||||||||||| || |||||||||||  |||| | || ||||||||||||| || || |||||||    
T  1048759 taaaaaattattctttaaaaagttaaatagttcaattttcaatgcgttgaatgcataatttttcataaaaagatattatttaa 1048677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 37976827 - 37976893
Alignment:
Q  180 ctttaaggattctataataaaaaattattctataaaaagttaaatattttaattttcaatgtattga 246  Q
    ||||||| |||||| ||||||||||||| || |||||||| ||||||||| ||||||||||| ||||    
T  37976827 ctttaagcattctaaaataaaaaattatactttaaaaagtcaaatattttgattttcaatgttttga 37976893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 5597736 - 5597787
Alignment:
Q  201 aaattattctataaaa-agttaaatattttaattttcaatgtattgattaca 251  Q
    |||||||||||||||| ||||||||||||||||||| ||| |||||||||||    
T  5597736 aaattattctataaaaaagttaaatattttaatttttaatatattgattaca 5597787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 295
Target Start/End: Original strand, 14758592 - 14758674
Alignment:
Q  213 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtgt 295  Q
    |||||||| || |||| ||||||| ||| ||||| | || ||||||||||||| | ||||||||||||| ||||||| |||||    
T  14758592 aaaaagtttaacatttcaattttcgatgcattgaatgcacaatttttcataaaaatttactatttaaagtccttaaagagtgt 14758674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 295
Target Start/End: Complemental strand, 40203151 - 40203069
Alignment:
Q  213 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtgt 295  Q
    ||||||| |||||||| ||||| ||||| |||||||||| |  |||||| | | |||||| |||||||||||||||| |||||    
T  40203151 aaaaagtcaaatatttcaatttccaatgcattgattacacatattttcagacaaagttaccatttaaagaccttaaagagtgt 40203069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 281
Target Start/End: Original strand, 45584538 - 45584640
Alignment:
Q  180 ctttaaggattctataataaaaaattattctataaaa-agttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactattta 278  Q
    |||||||||||| | || || |||||||| ||||||| ||||||||||||||||||   |||||||||||||| |  ||||||| |  ||||||| ||||    
T  45584538 ctttaaggattccaaaagaagaaattattttataaaaaagttaaatattttaatttctgatgtattgattacacatattttcatgataagttacttttta 45584637  T
Q  279 aag 281  Q
    |||    
T  45584638 aag 45584640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 273
Target Start/End: Original strand, 26687572 - 26687632
Alignment:
Q  213 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttact 273  Q
    ||||||| ||||||||  |||||||||| ||| |||||| | |||||||||||||||||||    
T  26687572 aaaaagtcaaatatttcgattttcaatgcattaattacacactttttcataaatagttact 26687632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 295
Target Start/End: Complemental strand, 26857278 - 26857182
Alignment:
Q  200 aaaattattctataaaaa-gttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtgt 295  Q
    ||||||||||| |||||| |||||||| |||||||||||||| ||||| || | ||  | ||||||| | |||||||||||   |||||||||||||    
T  26857278 aaaattattctttaaaaaagttaaatagtttaattttcaatgcattgaatatacaaaatctcataaaaaattactatttaagacccttaaaaagtgt 26857182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 295
Target Start/End: Complemental strand, 46830239 - 46830123
Alignment:
Q  180 ctttaaggattctataataaaaaattattct-ataaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactattta 278  Q
    ||||||| ||| || |||||| ||||||| | | |||||||||||| ||||||||||||  | ||||||||||   ||||||||||||| |||||| |||    
T  46830239 ctttaagcattataaaataaacaattatttttaaaaaaagttaaatgttttaattttcaccgcattgattacacgttttttcataaatacttactactta 46830140  T
Q  279 aagaccttaaaaagtgt 295  Q
     || | ||||| |||||    
T  46830139 tagtctttaaagagtgt 46830123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 50222672 - 50222612
Alignment:
Q  221 aaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaag 281  Q
    |||||||||||||||||||| ||||||||||    |||||||||| | |||||||||||||    
T  50222672 aaatattttaattttcaatgcattgattacacttattttcataaaaaattactatttaaag 50222612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 236
Target Start/End: Complemental strand, 29525132 - 29525097
Alignment:
Q  201 aaattattctataaaaagttaaatattttaattttc 236  Q
    |||||||||| |||||||||||||||||||||||||    
T  29525132 aaattattctttaaaaagttaaatattttaattttc 29525097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 267
Target Start/End: Complemental strand, 33744209 - 33744154
Alignment:
Q  212 taaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaata 267  Q
    |||||||| ||||||||  |||||||||| |||||||||| | |||||||||||||    
T  33744209 taaaaagtcaaatatttcgattttcaatgcattgattacatattttttcataaata 33744154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 17112739 - 17112797
Alignment:
Q  213 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagtta 271  Q
    ||||||| ||||||||| |||| ||||| |||||||||| |  ||||||||||||||||    
T  17112739 aaaaagtcaaatattttgatttccaatgcattgattacatatattttcataaatagtta 17112797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 17554891 - 17554949
Alignment:
Q  213 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagtta 271  Q
    |||||||||||| ||| ||||| ||||| |||||||| | | |||||||||||||||||    
T  17554891 aaaaagttaaatgtttcaatttacaatgcattgattatatattttttcataaatagtta 17554949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 280
Target Start/End: Complemental strand, 5115713 - 5115612
Alignment:
Q  180 ctttaaggattctataataaaaaattattctataaaaa-gttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactattta 278  Q
    |||||||||||||| || || |||||||  |||||||| ||||||||||| ||||| ||||| ||| |||||| || ||| || ||| | |||| |||||    
T  5115713 ctttaaggattctaaaagaataaattatgttataaaaaagttaaatatttcaatttccaatgcattaattacacaaatttacaaaaaaatttaccattta 5115614  T
Q  279 aa 280  Q
    ||    
T  5115613 aa 5115612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 312
Target Start/End: Complemental strand, 13794292 - 13794161
Alignment:
Q  180 ctttaaggattctataataaaaaattattctataa-aaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactattta 278  Q
    ||||||||||| || |||||||||||||| ||||| |||  |||||| ||||||||| |||||||| |||| | || |||| ||||| | |||  |||||    
T  13794292 ctttaaggatttta-aataaaaaattattttataagaaaaataaatagtttaatttttaatgtatttattatacaaatttttataaaga-ttatcattta 13794195  T
Q  279 aagaccttaaaaagtgtttctaagacactcgtta 312  Q
    ||||   |||||| |||||| |||| ||||||||    
T  13794194 aagattataaaaaatgtttcaaagagactcgtta 13794161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 295
Target Start/End: Complemental strand, 34596223 - 34596111
Alignment:
Q  182 ttaaggattctataataaaaaattattctataaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaag 281  Q
    |||||||||||| || || |||||||| ||| |||| | ||||||||  |||||||||| |||||||||| |   ||||||||| |||||  ||||||||    
T  34596223 ttaaggattctaaaagaagaaattattttat-aaaattcaaatatttcgattttcaatgcattgattacacataatttcataaaaagttatcatttaaag 34596125  T
Q  282 accttaaaaagtgt 295  Q
      |||||| |||||    
T  34596124 gtcttaaagagtgt 34596111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 273
Target Start/End: Original strand, 2633064 - 2633124
Alignment:
Q  213 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttact 273  Q
    |||||||||||| |||  |||| |||| ||||||||| | | |||||||||||||||||||    
T  2633064 aaaaagttaaatgtttcgatttccaatatattgattatacactttttcataaatagttact 2633124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 279
Target Start/End: Complemental strand, 5423833 - 5423753
Alignment:
Q  200 aaaattattctataaaaa-gttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaa 279  Q
    ||||||||||| |||||| |||||||| || ||||||||||| ||| | |||| || |||||||||| | |||| ||||||    
T  5423833 aaaattattctttaaaaaagttaaatagttcaattttcaatgcattaaatacataagttttcataaaaaattaccatttaa 5423753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 25095608 - 25095680
Alignment:
Q  180 ctttaaggattctataataaaaaattattctat-aaaaagttaaatattttaattttcaatgtattgattaca 251  Q
    |||||||||||||| || || ||||||||  || ||||||| |||||||| ||||||| ||| ||||||||||    
T  25095608 ctttaaggattctaaaagaagaaattatttcataaaaaagtcaaatatttcaattttcgatgcattgattaca 25095680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 251
Target Start/End: Complemental strand, 28171589 - 28171517
Alignment:
Q  180 ctttaaggattctataataaaaaattattctataaaaa-gttaaatattttaattttcaatgtattgattaca 251  Q
    ||||||| |||| | || ||||||||||| |||||||| ||||||||||| |||||| |||| ||| ||||||    
T  28171589 ctttaagcattcaaaaagaaaaaattattttataaaaaagttaaatatttcaatttttaatgcattcattaca 28171517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 213 - 310
Target Start/End: Complemental strand, 13063954 - 13063857
Alignment:
Q  213 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtgtttctaagacactcgt 310  Q
    ||||||| |||| || | |||| ||||  |||||||||| | |||||||||||||||||||||||| || ||||||| ||||| || |||||||||||    
T  13063954 aaaaagtcaaatgttgtgatttccaatacattgattacacactttttcataaatagttactatttatagtccttaaagagtgtctcgaagacactcgt 13063857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 295
Target Start/End: Complemental strand, 31702826 - 31702731
Alignment:
Q  201 aaattattctataaaaa-gttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtgt 295  Q
    |||||||| |||||||| ||||| |||||||||||  |||| |||||||||| |  |||| ||||| ||||||||||||| || |||||| |||||    
T  31702826 aaattattttataaaaaagttaagtattttaatttctaatgcattgattacacatatttttataaaaagttactatttaaggatcttaaagagtgt 31702731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 13070579 - 13070513
Alignment:
Q  212 taaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactattta 278  Q
    ||||||||||||| || | |||| ||||  |||||||||| | ||||||||||||||||||||||||    
T  13070579 taaaaagttaaatgttgtgatttccaatacattgattacacattttttcataaatagttactattta 13070513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 13070716 - 13070650
Alignment:
Q  212 taaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactattta 278  Q
    ||||||||||||| || | |||| ||||  |||||||||| | ||||||||||||||||||||||||    
T  13070716 taaaaagttaaatgttgtgatttccaatacattgattacatattttttcataaatagttactattta 13070650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 261
Target Start/End: Original strand, 30396265 - 30396328
Alignment:
Q  198 aaaaaattattctataaaaagttaaatattttaattttcaatgtattgattacagaatttttca 261  Q
    ||||||||||| |||||||| | |||||||  ||||||||||| |||||||||| || ||||||    
T  30396265 aaaaaattattttataaaaaatcaaatattacaattttcaatgcattgattacataaattttca 30396328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 317
Target Start/End: Original strand, 23399142 - 23399248
Alignment:
Q  212 taaaaagttaaatattttaattttcaatgtattgattacagaatttttcata-aatagttactatttaaagaccttaaaaagtgtttctaagacactcgt 310  Q
    ||||||||||| |||| ||||||||||||||||  || || || |||| ||| || | ||| |||||||||  |||||| ||||||||  ||||||||||    
T  23399142 taaaaagttaactattataattttcaatgtattcgttgcataacttttaatataaaacttaatatttaaagtacttaaagagtgtttcggagacactcgt 23399241  T
Q  311 tagcatt 317  Q
    || ||||    
T  23399242 taacatt 23399248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 12606060 - 12605996
Alignment:
Q  214 aaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactattta 278  Q
    |||||| ||||||||  |||||||||| |||||||| |   ||||||||||||| ||||||||||    
T  12606060 aaaagtaaaatatttggattttcaatgcattgattatacgctttttcataaatacttactattta 12605996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 13767276 - 13767320
Alignment:
Q  196 ataaaaaattattctataaaaag-ttaaatattttaattttcaat 239  Q
    ||||||||||||||| ||||| | |||||||||||||||||||||    
T  13767276 ataaaaaattattctctaaaatggttaaatattttaattttcaat 13767320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 291
Target Start/End: Complemental strand, 8898908 - 8898794
Alignment:
Q  180 ctttaaggattctataataaaaaattattctataa-aaagttaaatat--tttaattttcaatgtattgattacagaatttttcataaatagttactatt 276  Q
    |||||| ||||||| ||||| |||||||| ||||| ||||| ||||||  |||||||||||| |||||||||| | ||  ||||||||| |||||  |||    
T  8898908 ctttaatgattctaaaataagaaattattttataataaagtcaaatatattttaattttcaaagtattgattatacaaagtttcataaacagttataatt 8898809  T
Q  277 taaagaccttaaaaa 291  Q
    |||||| ||||||||    
T  8898808 taaagatcttaaaaa 8898794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 5962036 - 5961955
Alignment:
Q  213 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtg 294  Q
    ||||| |||||||||| ||||| ||||| |||||||||| || |||||| ||| |||||||||||||||  |||||| ||||    
T  5962036 aaaaaattaaatatttcaatttccaatgcattgattacataaattttcaaaaacagttactatttaaaggtcttaaatagtg 5961955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 14102372 - 14102291
Alignment:
Q  213 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtg 294  Q
    ||||||||||||||||  |||| ||||  |||||||||| | |||||||||||||||||||| ||| || ||||||| ||||    
T  14102372 aaaaagttaaatatttcgatttccaatacattgattacacactttttcataaatagttactacttatagtccttaaagagtg 14102291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 295
Target Start/End: Original strand, 2888941 - 2889023
Alignment:
Q  213 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtgt 295  Q
    ||||||||||||||||  |||| ||||||||||| |||| | |||||||||||||  ||||| ||| || ||||||| |||||    
T  2888941 aaaaagttaaatatttcgatttccaatgtattgactacacactttttcataaatacatactacttatagtccttaaagagtgt 2889023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 278
Target Start/End: Original strand, 35312103 - 35312201
Alignment:
Q  181 tttaaggattctataataaaaaattattctataaaaag-ttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactattta 278  Q
    |||||| |||||| |||||| || | |||| ||||||  |||||||||||||||| ||||||||| |||||| |  |||| ||||||| ||||||||||    
T  35312103 tttaagcattctaaaataaacaaattttctttaaaaaaattaaatattttaatttacaatgtattcattacatacatttttataaatatttactattta 35312201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 290
Target Start/End: Complemental strand, 42924482 - 42924413
Alignment:
Q  221 aaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaa 290  Q
    |||||||| ||||||||| ||||||||||||    |||||||||||| ||||||||||  ||||||||||    
T  42924482 aaatatttcaattttcaacgtattgattacatgcattttcataaatatttactatttatggaccttaaaa 42924413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 279
Target Start/End: Original strand, 13538415 - 13538495
Alignment:
Q  200 aaaattattctataaaaagtt-aaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaa 279  Q
    ||||||||||| |||||| || ||||| || ||||| ||||| ||||| |||| || |||||||||| |||||||||||||    
T  13538415 aaaattattctttaaaaaattcaaataattcaatttccaatgcattgaatacataacttttcataaaaagttactatttaa 13538495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 289
Target Start/End: Original strand, 25622574 - 25622642
Alignment:
Q  221 aaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaa 289  Q
    |||||||  ||||||||||| ||| |||||| | ||||||||||||| |||||| ||| ||||||||||    
T  25622574 aaatattacaattttcaatgcattaattacatattttttcataaatatttactacttatagaccttaaa 25622642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 280
Target Start/End: Original strand, 36051954 - 36052053
Alignment:
Q  181 tttaaggattctataataaaaaattattctataa-aaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaa 279  Q
    ||||| ||||||| ||||| ||||||| | |||| ||| | ||||||||||||||| |||| |||||||| | || |||| |||||||||||| ||||||    
T  36051954 tttaaagattctaaaataagaaattat-caataagaaaatcaaatattttaatttttaatgcattgattatacaaatttttataaatagttacaatttaa 36052052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 8964392 - 8964479
Alignment:
Q  181 tttaaggattctataataaaaaattattctataaaaa-gttaaatattttaattttcaatgtattgattacagaatttttcataaata 267  Q
    |||||| |||||| | |||  ||||||||| |||||| || |||||||| ||||| ||||| |||||||||| || ||||||||||||    
T  8964392 tttaagcattctaaattaagtaattattctttaaaaaagtaaaatatttcaatttccaatgcattgattacacaaattttcataaata 8964479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 4616859 - 4616909
Alignment:
Q  201 aaattattctataaaaagttaaatattttaattttcaatgtattgattaca 251  Q
    ||||||||  |||||||||||||||||  ||||||||||| ||||||||||    
T  4616859 aaattatttcataaaaagttaaatattacaattttcaatgcattgattaca 4616909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 294
Target Start/End: Complemental strand, 33963029 - 33962935
Alignment:
Q  201 aaattattctataaaaa-gttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtg 294  Q
    |||||||||| |||||| ||| || | || ||||||||||| ||||| | || ||||||||||||| | ||| ||||||||| ||||||| ||||    
T  33963029 aaattattctttaaaaaagtttaacacttcaattttcaatgcattgaatgcacaatttttcataaaaatttattatttaaagtccttaaagagtg 33962935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 278
Target Start/End: Complemental strand, 2517309 - 2517252
Alignment:
Q  221 aaatattttaattttcaatgtattgattacagaatttttcataaatagttactattta 278  Q
    |||||||| ||||||||||| ||||||||||    |||||||||||| ||||||||||    
T  2517309 aaatatttcaattttcaatgcattgattacacgtattttcataaatacttactattta 2517252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 274
Target Start/End: Original strand, 6581589 - 6581642
Alignment:
Q  221 aaatattttaattttcaatgtattgattacagaatttttcataaatagttacta 274  Q
    |||| |||| ||| |||||| |||||||||| | ||||||||||||||||||||    
T  6581589 aaatgttttgattctcaatgcattgattacacactttttcataaatagttacta 6581642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 45624402 - 45624443
Alignment:
Q  195 aataaaaaattattctataaaa-agttaaatattttaatttt 235  Q
    |||||||||||||| ||||||| |||||||||||||||||||    
T  45624402 aataaaaaattattttataaaaaagttaaatattttaatttt 45624443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 265
Target Start/End: Original strand, 2047814 - 2047866
Alignment:
Q  213 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaa 265  Q
    ||||| ||||||||||||||||| |||||||||||| || || || |||||||    
T  2047814 aaaaaattaaatattttaatttttaatgtattgattgcacaaattatcataaa 2047866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 277
Target Start/End: Original strand, 31513782 - 31513850
Alignment:
Q  210 tataaaaagttaaatattttaattttcaatgtattgattacagaatttt-tcataaatagttactattt 277  Q
    |||||||| |||||| |||  |||| ||||| |||||||||| | |||| |||||||||||||||||||    
T  31513782 tataaaaatttaaatgtttcgatttccaatgcattgattacacatttttttcataaatagttactattt 31513850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 39691221 - 39691121
Alignment:
Q  180 ctttaaggattctataataaaaaattattctataaaaa-gttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactattta 278  Q
    ||||||| |||| | | |||||||||||||| |||||| || ||||| || ||||||||||| ||||| |||| || |||||||||| | ||||||||||    
T  39691221 ctttaagcattccacattaaaaaattattctttaaaaaagtcaaatagttcaattttcaatgcattgaatacacaaattttcataaaaaattactattta 39691122  T
Q  279 a 279  Q
    |    
T  39691121 a 39691121  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 277
Target Start/End: Original strand, 7931734 - 7931812
Alignment:
Q  201 aaattattctataaaaa--gttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactattt 277  Q
    ||||||||| |||||||  || ||||||| ||||||||||||||||||||||| || |||||| ||| |||||| ||||    
T  7931734 aaattattcaataaaaaaggtcaaatattataattttcaatgtattgattacacaaattttcaaaaaaagttaccattt 7931812  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 278
Target Start/End: Complemental strand, 34716599 - 34716516
Alignment:
Q  195 aataaaaaattattctataaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactattta 278  Q
    |||||| ||||||||| |||||  |||||||||||| |||| |||| ||||||||||    |||||||||||| ||||||||||    
T  34716599 aataaataattattctttaaaatattaaatattttagtttttaatgaattgattacatgcattttcataaatacttactattta 34716516  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 289
Target Start/End: Original strand, 27055945 - 27056019
Alignment:
Q  215 aaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaa 289  Q
    |||||||||| |||  |||| |||||||||||||||| | ||||||||||||| |||||| ||| || |||||||    
T  27055945 aaagttaaatgtttcgatttccaatgtattgattacacattttttcataaataattactacttatagtccttaaa 27056019  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 33285986 - 33285916
Alignment:
Q  225 attttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtgt 295  Q
    |||| ||||||| ||||||| | |||| ||||||||||||| | ||||||||||||| |||||||| ||||    
T  33285986 atttcaattttcgatgtattaaatacacaatttttcataaaaatttactatttaaagtccttaaaacgtgt 33285916  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 296
Target Start/End: Complemental strand, 17521110 - 17520993
Alignment:
Q  180 ctttaaggattctataataaaaaatta-ttctataaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactattta 278  Q
    |||||||||||||| || ||||||  | || || ||||||||||||||||   ||| |||||||||||||||| |    || ||||| ||||||||||||    
T  17521110 ctttaaggattctaaaaaaaaaaaaaaattataaaaaaagttaaatatttcgttttccaatgtattgattacacatacatttataaaaagttactattta 17521011  T
Q  279 aagaccttaaaaagtgtt 296  Q
    |||  |||||||||||||    
T  17521010 aaggtcttaaaaagtgtt 17520993  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 10335130 - 10335019
Alignment:
Q  180 ctttaaggattctataataaaaaattattctataaaaa--gttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactattt 277  Q
    ||||||| |||| | || || |||||||||||||||||  || ||||||| |||||||||||| ||| |||| | || |||||| ||| | |||| ||||    
T  10335130 ctttaagaattccaaaagaataaattattctataaaaaaagtcaaatattataattttcaatgcattaattatacaaattttcacaaaaaattacaattt 10335031  T
Q  278 aaagaccttaaa 289  Q
    |||| |||||||    
T  10335030 aaaggccttaaa 10335019  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 317
Target Start/End: Original strand, 23984327 - 23984391
Alignment:
Q  253 aatttttcataaatagttactatttaaagaccttaaaaagtgtttctaagacactcgttagcatt 317  Q
    ||||||||||||| | ||||||||||||  ||||||  ||||||  |||||||||||||||||||    
T  23984327 aatttttcataaaaatttactatttaaaatccttaaggagtgttcttaagacactcgttagcatt 23984391  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 274
Target Start/End: Original strand, 32646833 - 32646912
Alignment:
Q  195 aataaaaaattattctat-aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttacta 274  Q
    |||||| ||||||||| | ||||||| ||||||||||||||| |||| ||||||||||  || ||||||||||| ||||||    
T  32646833 aataaacaattattcttttaaaaagtcaaatattttaatttttaatgcattgattaca-tatatttcataaatacttacta 32646912  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 278
Target Start/End: Original strand, 22209439 - 22209504
Alignment:
Q  213 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactattta 278  Q
    ||||||||||||||||| |||| |||   |||||||||| |  |||||||||||| ||||||||||    
T  22209439 aaaaagttaaatattttgatttccaagacattgattacatatattttcataaatacttactattta 22209504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 317
Target Start/End: Original strand, 11078133 - 11078197
Alignment:
Q  253 aatttttcataaatagttactatttaaagaccttaaaaagtgtttctaagacactcgttagcatt 317  Q
    ||||||||||||| | |||||||||| ||  ||||||||||||   || ||||||||||||||||    
T  11078133 aatttttcataaaaatttactatttagagttcttaaaaagtgtcattacgacactcgttagcatt 11078197  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 13328408 - 13328364
Alignment:
Q  195 aataaaaaattattctataaaaagttaaatattttaattttcaat 239  Q
    |||||| ||||||||| ||||| ||||||||||| ||||||||||    
T  13328408 aataaacaattattctttaaaatgttaaatatttcaattttcaat 13328364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 28313604 - 28313572
Alignment:
Q  219 ttaaatattttaattttcaatgtattgattaca 251  Q
    |||||||||| ||||||||||||||||||||||    
T  28313604 ttaaatatttcaattttcaatgtattgattaca 28313572  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 32503397 - 32503433
Alignment:
Q  202 aattattctataaaaagttaaatattttaattttcaa 238  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  32503397 aattattctattaaaagtaaaatattttaattttcaa 32503433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 240
Target Start/End: Original strand, 35149563 - 35149591
Alignment:
Q  212 taaaaagttaaatattttaattttcaatg 240  Q
    |||||||||||||||||||||||||||||    
T  35149563 taaaaagttaaatattttaattttcaatg 35149591  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 195 - 294
Target Start/End: Complemental strand, 31902841 - 31902741
Alignment:
Q  195 aataaaaaattattctataa-aaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagt 293  Q
    ||||| |||||||||  ||| ||||| |||||||| ||||||||||  ||||| |||| |||||| |||||| | ||||||||||||| ||||||| |||    
T  31902841 aataagaaattattccttaagaaagtcaaatatttcaattttcaatacattgactacacaattttccataaaaatttactatttaaagtccttaaagagt 31902742  T
Q  294 g 294  Q
    |    
T  31902741 g 31902741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 294
Target Start/End: Complemental strand, 10031995 - 10031913
Alignment:
Q  212 taaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtg 294  Q
    ||||||||||||| |||  |||| ||||| |||||||||| | |||||||||||||  ||||||||| || ||||||| ||||    
T  10031995 taaaaagttaaatgtttcgatttccaatgcattgattacacactttttcataaatacatactatttatagtccttaaagagtg 10031913  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 273
Target Start/End: Complemental strand, 33887959 - 33887866
Alignment:
Q  180 ctttaaggattctataataaaaaattattctataaaaa-gttaaatattttaattttcaatgtattgattacagaatttttcataaatagttact 273  Q
    ||||||| |||| | |||||| ||||||||| |||||| || |||||||| ||||||||||| ||||||||||  | |||||||||||| |||||    
T  33887959 ctttaagcattccaaaataaataattattctttaaaaaagtcaaatatttcaattttcaatgcattgattacatta-ttttcataaatacttact 33887866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 312
Target Start/End: Original strand, 35590978 - 35591079
Alignment:
Q  210 tataaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtgtttctaagacactcg 309  Q
    ||||||||||| |||||||||||||| |||||||| |||| | | |||||| || ||| |||| |||||    ||||||||||||||| | |||||||||    
T  35590978 tataaaaagtttaatattttaatttttaatgtattaattatacattttttcgtagatacttaccatttatgatccttaaaaagtgttt-tgagacactcg 35591076  T
Q  310 tta 312  Q
    |||    
T  35591077 tta 35591079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 30972333 - 30972374
Alignment:
Q  210 tataaaaagttaaatattttaattttcaatgtattgattaca 251  Q
    |||||||| |||||||||||||||||||||| ||||||||||    
T  30972333 tataaaaaattaaatattttaattttcaatgaattgattaca 30972374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 278
Target Start/End: Original strand, 18926347 - 18926425
Alignment:
Q  201 aaattattctataaaaagtt-aaatattttaattttcaatgtattgattacagaatttttcataaatagttactattta 278  Q
    |||||||||| ||||||| | ||||| || ||||||||||| ||||| |||| || |||||||||| |||||| |||||    
T  18926347 aaattattctttaaaaaggtgaaatagttcaattttcaatgcattgaatacacaacttttcataaaaagttaccattta 18926425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 220002 - 220083
Alignment:
Q  180 ctttaaggattctataataaaaaattattctataaaaagttaaatattttaattttcaatgtattgattacagaatttttca 261  Q
    |||||||||||| | || || |||||| |  |||||||||||||| ||| || ||||||| ||||||||||| || ||||||    
T  220002 ctttaaggattcaaaaagaataaattacttcataaaaagttaaatgtttcaactttcaatatattgattacacaaattttca 220083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 294
Target Start/End: Original strand, 3683475 - 3683535
Alignment:
Q  233 tttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagtg 294  Q
    |||| ||| ||||| |||| || |||||||||| ||||||||||| ||||||||||||||||    
T  3683475 tttccatgcattgaatacataacttttcataaaaagttactattt-aagaccttaaaaagtg 3683535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 2959647 - 2959595
Alignment:
Q  213 aaaaagttaaatattttaattttcaatgtattgattacagaatttttcataaa 265  Q
    |||||||||||| || ||| ||| |||| |||||||||| |||||||||||||    
T  2959647 aaaaagttaaatgttataaattttaatgcattgattacataatttttcataaa 2959595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 46128082 - 46128010
Alignment:
Q  221 aaatattttaattttcaatgtattgattacagaatttttcataaatagttactatttaaagaccttaaaaagt 293  Q
    |||| ||| ||||||||||| ||||||| || | ||||||||||||| || ||||||| |  |||||||||||    
T  46128082 aaatgtttcaattttcaatggattgattgcacattttttcataaatacttgctatttataatccttaaaaagt 46128010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 63582 - 63627
Alignment:
Q  202 aattattctataaaaagttaaatattttaattttcaatgtattgat 247  Q
    ||||||||| |||||||| |||||||||||||||||||| ||||||    
T  63582 aattattctttaaaaagtcaaatattttaattttcaatgcattgat 63627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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